BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G05840.1 Length=1698 Score E Sequences producing significant alignments: (Bits) Value Ahg470595 jgi|Araly1|470595|fgenesh2_kg.1__549__AT1G05840.1 2704 0.0 Ahg891239 jgi|Araly1|891239|Al_scaffold_0007_3225 111 1e-23 > Ahg470595 jgi|Araly1|470595|fgenesh2_kg.1__549__AT1G05840.1 Length=1695 Score = 2704 bits (1464), Expect = 0.0 Identities = 1628/1705 (95%), Gaps = 20/1705 (1%) Strand=Plus/Plus Query 4 AACAAACTCTGTAATTTCTGAACTTCCtcgtcgtcgtcgtcgtcgCCGCCGGTCCGGTGG 63 ||||||||||| ||||||||||||| | | ||||||||||||| |||||||||||||| Sbjct 1 AACAAACTCTGGAATTTCTGAACTT-C-C-TCGTCGTCGTCGT---CGCCGGTCCGGTGG 54 Query 64 TTTCTTTCAACTTCTCCGCCGAGACGACTGACGCTGTAAACATCAGGCACGTGGGAAGAA 123 ||||| |||||||||||||||||||||||| |||| |||| | |||||||| |||||||| Sbjct 55 TTTCTCTCAACTTCTCCGCCGAGACGACTGGCGCTATAAAAAACAGGCACGGGGGAAGAA 114 Query 124 GAAAGAAGATGACTTTATCAATCGTATCTTTCCCCATCTGCGGAA-GATTCACGCTGATT 182 | ||||||||||| || |||||||| |||||||||||||||| || || ||||||||||| Sbjct 115 GGAAGAAGATGACCTTCTCAATCGTCTCTTTCCCCATCTGCGCAAGGA-TCACGCTGATT 173 Query 183 TGGTTTCTCACTGCTCTTGTTTCCGTCTCTTGTAATCCCGGAGTGTTCAATGTAAAGTAC 242 |||||||||||| ||||| ||||||| |||| |||||||||||| |||||||| |||||| Sbjct 174 TGGTTTCTCACTTCTCTTATTTCCGTATCTTCTAATCCCGGAGTCTTCAATGTTAAGTAC 233 Query 243 CGTTATCCAAGGCTTCAAGGGTCCTTGACCGCCTTAAAGGAGCACGATGACCGGCGTCAG 302 ||||||||| ||||||||||||| || | ||||||||||||||| ||||||||||||||| Sbjct 234 CGTTATCCACGGCTTCAAGGGTCTTTAAGCGCCTTAAAGGAGCATGATGACCGGCGTCAG 293 Query 303 CTCACAATTCTCGCTGGAATCGATCTACCCCTTGGTGGAACTGGTCGCCCTGATATCCCC 362 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 294 CTCACAATTCTCGCCGGAATCGATCTACCCCTTGGTGGAACTGGTCGTCCTGATATCCCC 353 Query 363 GGGCTTTATTATGCAAAAATTGGAATTGGAACACCTGCTAAGAGCTATTATGTTCAAGTC 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 354 GGGCTTTATTATGCAAAAATTGGAATTGGAACACCTGCTAAGAGCTATTATGTTCAAGTC 413 Query 423 GACACAGGGAGTGATATTATGTGGGTTAACTGCATCCAGTGCAAACAATGTCCAAGACGA 482 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 414 GACACAGGCAGTGATATTATGTGGGTTAACTGTATCCAGTGCAAACAATGTCCAAGACGA 473 Query 483 AGCACTCTCGGTATTGAGCTTACACTCTACAACATTGACGAATCAGACAGTGGAAAGTTG 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 474 AGCACTCTCGGTATTGAGCTTACACTCTACAACATTGACGAATCAGACAGTGGAAAGTTG 533 Query 543 GTCTCTTGTGATGATGATTTTTGCTACCAGATTAGTGGTGGTCCTCTCTCTGGCTGCAAA 602 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 534 GTCTCTTGTGATGATGATTTTTGCTATCAGATTAGTGGTGGTCCTCTCTCAGGCTGCAAA 593 Query 603 GCTAATATGTCTTGTCCTTATCTTGAGATATATGGAGATGGTAGCTCTACTGCTGGTTAT 662 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 594 GCTAATATGTCTTGTCCTTATCTTGAGATTTATGGAGATGGTAGCTCTACTGCTGGTTAT 653 Query 663 TTTGTCAAAGATGTTGTGCAGTATGACAGTGTAGCTGGTGATCTCAAGACTCAAACAGCT 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 654 TTTGTCAAAGATGTTGTGCAGTATGACAGTGTAGCTGGTGATCTCAAGACTCAAACAGCT 713 Query 723 AATGGCAGTGTCATTTTTGGGTGTGGTGCTAGGCAGTCAGGAGATCTAGACTCTTCTAAT 782 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 714 AATGGGAGTGTCATATTTGGGTGTGGTGCTAGGCAGTCAGGAGATCTAGACTCTTCTAAT 773 Query 783 GAAGAAGCACTTGACGGAATACTTGGATTTGGGAAAGCTAATTCTTCCATGATTTCCCAG 842 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 774 GAAGAAGCACTTGACGGAATACTTGGATTTGGGAAAGCTAATTCCTCCATGATTTCCCAG 833 Query 843 CTGGCCTCATCAGGGAGAGTGAAAAAGATATTTGCTCATTGCTTAGATGGAAGAAATGGA 902 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 834 CTGGCCTCATCAGGGAGAGTGAAAAAGATATTTGCTCATTGCTTAGATGGAAGAAATGGA 893 Query 903 GGTGGTATATTTGCTATTGGACGTGTTGTGCAACCAAAAGTAAACATGACACCATTGGTA 962 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 894 GGTGGTATATTTGCTATTGGGCGTGTTGTGCAACCAAAAGTAAACATGACACCATTGGTA 953 Query 963 CCCAATCAACCACATTACAATGTCAATATGACAGCAGTTCAAGTTGGTCAGGAGTTTCTA 1022 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 954 CCCAATCAACCACATTACAATGTCAATATGACAGCAGTTCAAGTTGGTCAGGAGTTCCTA 1013 Query 1023 ACTATCCCAGCCGATTTATTTCAACCTGGAGATAGAAAAGGAGCGATAATTGACAGTGGT 1082 | ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1014 AATATCCCAGCGGATTTATTTCAGCCTGGAGATAGAAAAGGAGCGATAATTGACAGTGGT 1073 Query 1083 ACAACCTTGGCCTATCTTCCAGAGATAATCTATGAACCATTGGTGAAGAAGATAACCTCG 1142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1074 ACAACCTTGGCCTATCTTCCAGAGATAATCTATGAACCATTGGTGAAGAAGATAACCTCG 1133 Query 1143 CAGGAGCCTGCTCTAAAAGTTCACATAGTGGATAAAGATTATAAATGCTTTCAGTACTCT 1202 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1134 CAGGAGCCTGCTCTGAAAGTTCACATAGTGGATAAAGATTATAAATGCTTTCAGTACTCT 1193 Query 1203 GGCAGAGTTGATGAGGGGTTTCCGAATGTCACTTTCCATTTCGAGAACTCGGTTTTCCTC 1262 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1194 GGAAGAGTTGATGAGGGGTTTCCGAATGTCACTTTCCATTTCGAGAACTCGGTATTCCTC 1253 Query 1263 AGGGTTTATCCTCATGACTATCTGTTCCCTCATGAAGGAATGTGGTGCATTGGTTGGCAA 1322 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 1254 AGGGTTTATCCTCATGACTATTTGTTCCCTTATGAAGGAATGTGGTGCATTGGTTGGCAA 1313 Query 1323 AATAGCGCAATGCAATCCAGAGATAGGAGAAACATGACACTTTTGGGAGATTTGGTGCTT 1382 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1314 AATAGCGCAATGCAATCCAGGGATAGGAGAAACATGACACTTTTGGGAGATTTGGTGCTT 1373 Query 1383 TCAAACAAGCTTGTTCTCTACGATCTCGAAAATCAGCTCATTGGGTGGACTGAATACAAC 1442 |||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||| Sbjct 1374 TCAAACAAACTTGTTCTCTACGATCTCGAAAATCAGCTCATTGGATGGACCGAGTACAAC 1433 Query 1443 TGCTCATCAAGCATAAAAGTAAAAGACGAAGGCACAGGAACAGTTCATCTAGTAGGCTCA 1502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1434 TGCTCATCAAGCATAAAAGTAAAAGACGAAGGCACAGGAACAGTTCATCTAGTAGGCTCA 1493 Query 1503 CATTTTATCTCTTCTGCATTACCTTTGGATACCTCTATGTGTCTTCTATTTTCTTTACTT 1562 |||||||||||||||||||||||||||||||||| | ||| | | ||| ||||| ||||| Sbjct 1494 CATTTTATCTCTTCTGCATTACCTTTGGATACCTGTCTGT-T-T-CTACTTTCTGTACTT 1550 Query 1563 CTCCTCATGACTCTTTTCCTCCTTTAGAGACTCCTTATAGTTTATCTTTTGTACATAGAT 1622 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1551 CTCCTCATGACTATGTTCCTCCTTTAGAGACTCCTTATAGTTTATCTTTTGTACATAGAT 1610 Query 1623 TCAACATTTTGCTAAAATGGTAAAGAAAAA-------GGTCTGATATATA--GATAATAC 1673 |||||||||||||||||||||||| ||||| ||||||||||||| |||||||| Sbjct 1611 TCAACATTTTGCTAAAATGGTAAAAAAAAAAAAAAAAGGTCTGATATATATAGATAATAC 1670 Query 1674 GAAGAAACCCAGCAGATTGATGATG 1698 |||||| ||||||||||||||||| Sbjct 1671 AAAGAAAACCAGCAGATTGATGATG 1695 > Ahg891239 jgi|Araly1|891239|Al_scaffold_0007_3225 Length=1443 Score = 111 bits (60), Expect = 1e-23 Identities = 166/214 (78%), Gaps = 19/214 (9%) Strand=Plus/Plus Query 1266 GTTTATCCTCATGACTATCTGTTC-C-C-TCATGAAGGA-ATGTGGTGCATTGGTTGGCA 1321 |||||||| ||||||||||| ||| | | || |||| || |||| ||| |||||||||| Sbjct 1114 GTTTATCCGCATGACTATCTTTTCTCACTTCGTGAA-GATATGTATTGCTTTGGTTGGCA 1172 Query 1322 AAATAGCGCAATG-CAATC-CAGAGATAGGAGAAAC-ATG--A-CACTTTTGGGAGATTT 1375 | | | | |||| | | | ||| || |||| | ||| | | |||||||||||||| Sbjct 1173 ATCTGGTGGAATGACGA-CGCAG-GA-CGGAG--CCGATGTAATC-CTTTTGGGAGATTT 1226 Query 1376 GGTGCTTTCAAACAAGCTT-GTTCTCTACGATCTCGAAAATCAGCTCATTGGGTGGACTG 1434 |||||||||||||||| || || | |||||||| || ||| || ||||||| ||| ||| Sbjct 1227 GGTGCTTTCAAACAAG-TTAGTAGTATACGATCTGGAGAATGAGGTCATTGGATGGGCTG 1285 Query 1435 AATACAACTGCTCATCAAGCATAAAAGTAAAAGA 1468 | ||||||| || |||||||| ||||| ||||| Sbjct 1286 ACCACAACTGTTCGTCAAGCATCAAAGTGAAAGA 1319 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63686889640 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5