BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05850.1
Length=1478
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470596 jgi|Araly1|470596|fgenesh2_kg.1__550__AT1G05850.1 2045 0.0
> Ahg470596 jgi|Araly1|470596|fgenesh2_kg.1__550__AT1G05850.1
Length=1393
Score = 2045 bits (1107), Expect = 0.0
Identities = 1307/1397 (94%), Gaps = 40/1397 (3%)
Strand=Plus/Plus
Query 1 GTTTAGTGTTTCTTCTTCCTCCTCTCTTTCCCAAGAATCTCTTCCTTATTTTCTCGGCAA 60
|||||||||||||||||||| | ||| |||| |||| || | ||||||||||||||||
Sbjct 1 GTTTAGTGTTTCTTCTTCCT--TGTCTCTCCCGAGAA--TC-T-CTTATTTTCTCGGCAA 54
Query 61 CGAAGCAAAAAGGGTAATTTTTGTCGGTTGAATTCACAAGCTAGTTTTCTCGATCTCTCT 120
|||||||||||||||| ||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct 55 CGAAGCAAAAAGGGTAGTTTTTGTCGGTTGAA-TCACAAACTAATTTTCTCGATCTCTCT 113
Query 121 CTGGATCTATAGCTGATCTGCATTGCGGCTTGTAGCTGGTATTTGTTCCATAGTTGTAAG 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 CTGGATCTGTAGCTGATCTGCATTGCGGCTTGTAGCTGGTATTTGTTCCATAGTTGTAAG 173
Query 181 CTATGGTGACAATCAGGAGTGGTTCAATCGTGATTTTGGTTCTGCTGGCTGTATCATTTC 240
||||||||| ||| |||||||||| ||||||||| |||||||||||||||||||||| |
Sbjct 174 ATATGGTGACCATCCGGAGTGGTTCGATCGTGATTCTGGTTCTGCTGGCTGTATCATTCC 233
Query 241 TGGCCTTGGTTGCCAATGGAGAGGACAAAACGATTAAAGTGAAGAAAGTGAGGGGAAATA 300
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 234 TGGCCTTGGTTGCAAATGGAGAGGACAAAACGATTAAAGTGAAGAAAGTGAGGGGAGAGA 293
Query 301 AGGTGTGCACGCAAGGATGGGAATGCAGCTGGTGGTCTAAATACTGCTGTAACCAGACGA 360
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 GGGTGTGCACACAGGGATGGGAATGCAGCTGGTGGTCTAAATACTGCTGTAACCAGACGA 353
Query 361 TATCAGATTACTTTCAGGTTTATCAGTTTGAGCAACTCTTTTCCAAAAGGAACACTCCCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TATCAGATTACTTTCAGGTTTATCAGTTTGAGCAACTCTTTTCCAAAAGGAACACTCCCA 413
Query 421 TTGCTCATGCTGTTGGTTTCTGGGACTACCAGTCTTTCATTACTGCTGCTGCCCTCTTTG 480
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 414 TTGCTCACGCTGTTGGTTTCTGGGACTACCAGTCCTTCATTACTGCTGCTGCCCTCTATG 473
Query 481 AGCCTCTTGGTTTTGGTACCACTGGAGGAAAGCTC-ATGGGACAGAAAGAAATGGCTGCC 539
|||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 474 AGCCTCTTGGGTTTGGTACCACTGGAGGAAAGCTCCA-GGGACAGAAAGAAATGGCTGCC 532
Query 540 TTTCTCGGTCATGTAGCCAGCAAAACGTCCTGTGGCTATGGAGTTGCAACAGGAGGGCCT 599
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 533 TTTCTCGGTCATGTTGCCAGCAAAACGTCCTGTGGCTATGGAGTCGCAACAGGAGGGCCT 592
Query 600 TTAGCTTGGGGTCTGTGCTACAACAGGGAAATGAGCCCAATGCAATCCTACTGTGACGAG 659
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 593 TTAGCTTGGGGTCTGTGCTATAACAGGGAAATGAGCCCAATGCAATCCTACTGTGACGAG 652
Query 660 TCCTGGAAATTCAAGTACCCCTGCAGCCCTGGAGCTGAATACTACGGACGCGGTGCCTTA 719
|||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||
Sbjct 653 TCCTGGAAATTCAAGTACCCTTGCAGTCCTGGAGCTGAATACTACGGACGTGGGGCCTTA 712
Query 720 CCCATTTACTGGAACTTCAACTACGGAGCAGCTGGGGAAGCCCTGAAAGCTGATCTCTTG 779
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 713 CCCATTTACTGGAACTTCAACTACGGTGCAGCTGGGGAAGCCCTGAAAGCTGATCTCTTG 772
Query 780 AACCACCCTGAGTACATTGAGCAAAACGCGACACTTGCATTCCAAGCTGCAATCTGGAGA 839
|||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 773 AACCACCCCGAGTACATCGAGCAGAACGCGACACTTGCATTCCAAGCTGCAATCTGGAGA 832
Query 840 TGGATGACTCCAATCAAGAGAGCTCAGCCCTCAGCTCACGACATCTTTGTCGGAAACTGG 899
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 833 TGGATGACTCCAATCAAGAGATTTCAGCCCTCAGCCCACGACATCTTTGTCGGAAACTGG 892
Query 900 AAACCTACAAAGAACGACACTTTGTCCAAGCGTGGCCCGACTTTTGGCAGCACCATGAAC 959
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 893 AAACCTACAAAGAACGACACTTTGTCCAAGCGTGGCCCAACTTTCGGCAGCACCATGAAC 952
Query 960 GTCCTCTACGGAGAGTACACATGTGGTCAAGGTTCCATTGATCCAATGAACAACATAATC 1019
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 953 GTCCTCTACGGAGAGTACACATGTGGCCAAGGTTCCATTGATCCAATGAACAACATAATC 1012
Query 1020 TCACACTACTTATACTTCCTTGACCTCATGGGTATTGGAAGAGAAGACGC-GGGACCAAA 1078
|||||||||||||||||||| |||||| |||||||||||||||||||||| ||| |||||
Sbjct 1013 TCACACTACTTATACTTCCTCGACCTCTTGGGTATTGGAAGAGAAGACGCCGGG-CCAAA 1071
Query 1079 CGATGAGCTCAGCTGCGCAGAACAGAAACCTTTCAACCCTTCAACTGTACCTTCCTCTTC 1138
||| ||||| || |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1072 CGAGGAGCTGAGTTGCGCAGAACAGAAACCTTTCAACCCTTCAACTGTAGCTTCCTCTTC 1131
Query 1139 CTCTTCGTAAGTCTTATGATATATCGCCGTTGCTCTCAAGTCTCTCTTGCTT-----AA- 1192
|||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||
Sbjct 1132 CTCTTCGTAAGTCTTATGATGTATCGCCATTGCTCTCAAGTCTCTCTTGCTTCGCCGAAG 1191
Query 1193 ---TGTTACGTAATAAGTGAAATTGCTTGTGGTaaaaaaaGAAGAAGTGTGTTTTTGTCC 1249
|||||||||||||||||||||||||||||||||||| | | || ||||
Sbjct 1192 AAATGTTACGTAATAAGTGAAATTGCTTGTGGTAAAAAA--------T-T-TT---GTCC 1238
Query 1250 CTCTAGAACTTATAATGCAAACAACATTACATTTTATATTTTTCTGTATGTAAAACCATA 1309
|||||||||||||||||||||||| | | ||| |||||||||||||||||||||||||
Sbjct 1239 CTCTAGAACTTATAATGCAAACAA-A--A--TTT-ATATTTTTCTGTATGTAAAACCATA 1292
Query 1310 TTTAATTATTGTATTGGAAGAATGTGTGTAAAATAGAGAAAGAGCAAGGAAACATAAATG 1369
||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1293 TTTAATTATTGTATTTGAAGAATGTGTGTAAAATAGAGAAA-AGCGAGGAAACATAAATG 1351
Query 1370 TGGTTTGCGAATGATAT 1386
|||||||||||||||||
Sbjct 1352 TGGTTTGCGAATGATAT 1368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55307035740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5