BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G05870.1 Length=878 Score E Sequences producing significant alignments: (Bits) Value Ahg470598 jgi|Araly1|470598|fgenesh2_kg.1__552__AT1G05870.2 885 0.0 Ahg482083 jgi|Araly1|482083|fgenesh2_kg.4__1143__AT2G31560.1 316 1e-85 Ahg497529 jgi|Araly1|497529|fgenesh2_kg.762__2__AT2G31560.1 311 6e-84 Ahg479783 jgi|Araly1|479783|fgenesh2_kg.3__2484__AT3G22690.1 235 4e-61 > Ahg470598 jgi|Araly1|470598|fgenesh2_kg.1__552__AT1G05870.2 Length=1153 Score = 885 bits (479), Expect = 0.0 Identities = 648/722 (90%), Gaps = 42/722 (6%) Strand=Plus/Plus Query 66 ATGGGTTGTGTTCGCTGCAAATCATCAGATCCATGGCAAACATCTGCCAATGCCTT---T 122 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1 ATGGGTTGTGCTCGCTGCAAATCATCAGATCCATGGCAAACATCTGCCAGTGCCTTGGAA 60 Query 123 GAATCCGTCGATGAATCCGGAATCAACGAAGCCTGGGTTGAGATCTCCAGCCGCAGATCA 182 ||| |||||||||||| ||||||||||||||||||||||||||||| | |||||||||| Sbjct 61 GAAGACGTCGATGAATCTGGAATCAACGAAGCCTGGGTTGAGATCTCTAACCGCAGATCA 120 Query 183 TTTGTCGCCGGCGAA-G--GTAGTCGGAAGAAGCTAGAGAGGAAGAAGAGCCAAGTGTTA 239 |||||| |||||||| | |||||||||||||||| |||||||||||||||||||||||| Sbjct 121 TTTGTCTCCGGCGAAGGTAGTAGTCGGAAGAAGCTGGAGAGGAAGAAGAGCCAAGTGTTA 180 Query 240 CTGGAAGGTTACGTTGAGACTGCTTCTTCTTCCTCGGTGGATGATCAAAAGGACGATCTG 299 |||||||||||||||||||||| | | || |||||||||||||| ||||||||| Sbjct 181 CTGGAAGGTTACGTTGAGACTG------C-TGCT--GTGGATGATCAAAAAGACGATCTG 231 Query 300 ACGAGATCCAAGAGTTTGACGGATGACGACCTCGAAGATCTTAGAGGTTGTTTAGATCTA 359 ||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||| Sbjct 232 ACGAGATCCAAGAGTTTGACGGATGACGATCTCGAAGATCTCAAAGGTTGTTTAGATCTA 291 Query 360 GGGTTTGGTTTTAGCTACGACGAGATCCCTGAGCTCTGCAACACTTTACCTGCTTTGGAG 419 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 292 GGGTTTGGTTTCAGCTACGACGAGATCCCTGAGCTCTGCAACACTTTACCTGCTTTGGAG 351 Query 420 CTTTGCTATTCAATGAGCCAGAAGTTCTTAGACGATAAGCAAAATAAATCACCGGAAACT 479 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 352 CTTTGCTATTCAATGAGCCAGAAGTTCTTAGACGATAAGCA---TAAATCACCGGAAAGT 408 Query 480 TCGTCGGTGGAAGATTGTCCGTCGCCTCCAC-TGGTCACCGCCACTCCGATTGCCAATTG 538 |||||||||||||||| |||||||||||||| || ||||| ||||||| ||||||||||| Sbjct 409 TCGTCGGTGGAAGATTCTCCGTCGCCTCCACCTG-TCACCTCCACTCCCATTGCCAATTG 467 Query 539 GAAGATCTCTAGTCCCGGTGATAATCCGGATGATGTGAAAGCTAGGCTCAAATACTGGGC 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 468 GAAGATCTCTAGTCCCGGTGATAATCCGGATGATGTGAAAGCTAGGCTCAAATACTGGGC 527 Query 599 ACAAGCCGTTGCCTGTACTGTCCAATTGTGCAGCTGAATGAATCATTGTCACGTCTGAAC 658 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 528 ACAAGCCGTTGCCTGTACTGTCCAATTGTGCAGCTGAATGAATCATTGTCACTTCTCAAC 587 Query 659 CAGGAATACTAGCGAATGAGCAATATCTCAAGCATTGGTAGCGGAGGAGGAGATTTCAGA 718 || || || | || | || | | | | || | | | || |||| | | ||||| Sbjct 588 CAATAA--CT--C-AA--A-CATTGT-T-A-GC-TA--T-G-GG-GGAG-A--TCTCAGA 627 Query 719 AAGTGGCATTGGAAGGTCTAAAATTGAACTGAATATCAACAATGGTTCTCACTTAATTCC 778 ||| | ||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||| Sbjct 628 AAG-G-CATTGGAAGGTCTGAAATTTAACTGAATATCAACAATGATTCTCACTTGATTCC 685 Query 779 AT 780 || Sbjct 686 AT 687 > Ahg482083 jgi|Araly1|482083|fgenesh2_kg.4__1143__AT2G31560.1 Length=1115 Score = 316 bits (171), Expect = 1e-85 Identities = 301/363 (83%), Gaps = 12/363 (3%) Strand=Plus/Plus Query 277 TGGATGATCAAAAGGACGATCTGACGAGATCCAAGAGTTTGACGGATGACGACCTCGAAG 336 |||||||| ||| || ||| |||||||| ||||||||||||||||||| || || || | Sbjct 282 TGGATGAT--AAA-GATGATTTGACGAGAGCCAAGAGTTTGACGGATGATGATCTTGAGG 338 Query 337 ATCTTAGAGGTTGTTTAGATCTAGGGTTTGGTTTTAGCTACGACGAGATCCCTGAGCTCT 396 | |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 339 AGCTTAAAGGTTGTTTAGATCTAGGGTTTGGTTTTAGTTACGACGAGATCCCTGAGCTTT 398 Query 397 GCAACACTTTACCTGCTTTGGAGCTTTGCTATTCAATGAGCCAGAAGTTCTTAGACGATA 456 | || ||||| ||||| || |||||||| || || |||||||||||||||||||| |||| Sbjct 399 GTAATACTTTGCCTGCGTTAGAGCTTTGTTACTCCATGAGCCAGAAGTTCTTAGATGATA 458 Query 457 AGCAAAATAAATCACCGGAAACTTCGTCGG-TGGAAGATTG-TCCGTCGCCTCCACTGGT 514 ||||| | |||||||| || | | ||| || ||||| | | || | || |||| Sbjct 459 AGCAACA-AAATCACCACAAG-TCCC-CGGATG-AAGAT-GATTCGCCTCCACCACCAAC 513 Query 515 CACCG-CCACTCCGATTGCCAATTGGAAGATCTCTAGTCCCGGTGATAATCCGGATGATG 573 ||| | || |||| ||||| |||||||||||||||||||| |||||| |||| ||||||| Sbjct 514 CAC-GACCGCTCCAATTGCAAATTGGAAGATCTCTAGTCCTGGTGATGATCCAGATGATG 572 Query 574 TGAAAGCTAGGCTCAAATACTGGGCACAAGCCGTTGCCTGTACTGTCCAATTGTGCAGCT 633 | |||||||| |||||||| ||||||||| | ||||| || || || | ||||||||||| Sbjct 573 TAAAAGCTAGACTCAAATATTGGGCACAAACTGTTGCTTGCACCGTACGATTGTGCAGCT 632 Query 634 GAA 636 ||| Sbjct 633 GAA 635 > Ahg497529 jgi|Araly1|497529|fgenesh2_kg.762__2__AT2G31560.1 Length=1104 Score = 311 bits (168), Expect = 6e-84 Identities = 299/362 (83%), Gaps = 10/362 (3%) Strand=Plus/Plus Query 277 TGGATGATCAAAAGGACGATCTGACGAGATCCAAGAGTTTGACGGATGACGACCTCGAAG 336 |||||||| ||| || ||| |||||||| |||||||||||||||| || || || || | Sbjct 271 TGGATGAT--AAA-GATGATTTGACGAGAGCCAAGAGTTTGACGGAAGATGATCTTGAGG 327 Query 337 ATCTTAGAGGTTGTTTAGATCTAGGGTTTGGTTTTAGCTACGACGAGATCCCTGAGCTCT 396 | |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 328 AGCTTAAAGGTTGTTTAGATCTAGGGTTTGGTTTTAGTTACGACGAGATCCCTGAGCTTT 387 Query 397 GCAACACTTTACCTGCTTTGGAGCTTTGCTATTCAATGAGCCAGAAGTTCTTAGACGATA 456 | || ||||| ||||| || |||||||| || || |||||||||||||||||||| |||| Sbjct 388 GTAATACTTTGCCTGCGTTAGAGCTTTGTTACTCCATGAGCCAGAAGTTCTTAGATGATA 447 Query 457 AGCAAAATAAATCACCGGAAACTTCGTCGG-TGGAAGATTG-TCCGTCGCCTCCACTGGT 514 ||||| | |||||||| || | | ||| || ||||| | | || | || |||| | Sbjct 448 AGCAACA-AAATCACCACAAG-TCCC-CGGATG-AAGAT-GATTCGCCTCCACCACCGAA 502 Query 515 CACCGCCACTCCGATTGCCAATTGGAAGATCTCTAGTCCCGGTGATAATCCGGATGATGT 574 |||| || ||| ||||| ||||||||||| |||||||| |||||| |||| |||||||| Sbjct 503 CACCACCGTTCCAATTGCAAATTGGAAGATATCTAGTCCTGGTGATGATCCAGATGATGT 562 Query 575 GAAAGCTAGGCTCAAATACTGGGCACAAGCCGTTGCCTGTACTGTCCAATTGTGCAGCTG 634 |||||||| |||||||| ||||||||| | ||||| || || || | |||||||||||| Sbjct 563 AAAAGCTAGACTCAAATATTGGGCACAAACTGTTGCTTGCACCGTACGATTGTGCAGCTG 622 Query 635 AA 636 || Sbjct 623 AA 624 > Ahg479783 jgi|Araly1|479783|fgenesh2_kg.3__2484__AT3G22690.1 Length=2712 Score = 235 bits (127), Expect = 4e-61 Identities = 141/148 (95%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 313 GTTTGACGGATGACGACCTCGAAGATCTTAGAGGTTGTTTAGATCTAGGGTTTGGTTTTA 372 |||||||||||||||| ||||||||||| | |||||||||||||||||| |||||||| | Sbjct 2522 GTTTGACGGATGACGATCTCGAAGATCTCAAAGGTTGTTTAGATCTAGGCTTTGGTTTCA 2581 Query 373 GCTACGACGAGATCCCTGAGCTCTGCAACACTTTACCTGCTTTGGAGCTTTGCTATTCAA 432 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2582 GCTATGACGAGATCCCTGAGCTCTGCAACACTTTACCTGCTTTAGAGCTTTGCTATTCAA 2641 Query 433 TGAGCCAGAAGTTCTTAGACGATAAGCA 460 |||||||||||||||||||||||||||| Sbjct 2642 TGAGCCAGAAGTTCTTAGACGATAAGCA 2669 Score = 52.8 bits (28), Expect = 4e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 528 ATTGCCAATTGGAAGATCTCTAGTCCCG 555 |||||||||||||||||||||||||||| Sbjct 2685 ATTGCCAATTGGAAGATCTCTAGTCCCG 2712 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32518848201 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5