BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05940.1
Length=1955
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490566 jgi|Araly1|490566|fgenesh2_kg.6__3700__AT1G05940.1 2957 0.0
> Ahg490566 jgi|Araly1|490566|fgenesh2_kg.6__3700__AT1G05940.1
Length=1854
Score = 2957 bits (1601), Expect = 0.0
Identities = 1716/1772 (97%), Gaps = 6/1772 (0%)
Strand=Plus/Plus
Query 14 CAATCTTCAACTCTCAAATTGAAGTTTCCATGGGAGGCCACGAAGGTTTCAGCAACCAAC 73
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2 CAATCTTCAACTCTCTAATTCAAGTTTCCATGGGAGGCCACGAAGGTTTCAGCAACCAAC 61
Query 74 GCCTCTCCTCCGCCACATGGTTCTCTCATTTCCGTGCTTCAGCTCTCCGATCTAAATCAC 133
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 62 GCCTCTCCTCCGCCACATGGTTCTCTCATTTCCGTGCTTCAGCTCTCCGATCTAAATCTC 121
Query 134 TGCCCCCTCCGTCCTCGCAGACTGCCGTTCGCTCCACCTCTGGCGACTCTCTGGTTCGTC 193
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 122 TGCCCCCTCCGTCCTCGCAGACTGCCGTTCGCTCCACCTCCGGCGACTCTCTTGTTCGTC 181
Query 194 GCCTCGGCCTTTTCGACCTCATACTGTTGGGCGTCGGCGCTTCCATCGGCGCCGGTGTCT 253
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 182 GCCTCGGCCTTTTCGACCTCGTACTGTTGGGCGTCGGCGCTTCCATCGGCGCCGGTGTCT 241
Query 254 TCGTCGTCACCGGAACCGTCGCTCGCGATGCTGGACCTGGAGTCACAATCAGCTTCTTGC 313
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 242 TCGTCGTTACCGGAACCGTCGCTCGCGATGCTGGACCTGGAGTCACGATCAGCTTCTTGC 301
Query 314 TAGCTGGAGCATCGTGTGTGTTGAACGCTCTCTGTTATGCTGAACTTTCATCTCGTTTCC 373
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 302 TAGCTGGAGCATCGTGTGTGTTGAACGCTCTCTGTTATGCTGAACTTGCATCTCGTTTCC 361
Query 374 CTGCTGTTGTTGGTGGAGCTTACATGTACTCTTACTCAGCTTTCAATGAGATCACAGCTT 433
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 362 CTGCTGTTGTTGGTGGAGCTTACATGTACTCGTATTCAGCTTTCAATGAGATCACAGCTT 421
Query 434 TTCTTGTTTTCGTTCAACTCATGCTTGACTATCATATTGGCGCCGCTAGTATCTCCCGTA 493
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 422 TTCTTGTTTTCGTACAACTCATGCTTGATTATCATATTGGCGCCGCTAGTATCTCCCGTA 481
Query 494 GCTTGGCCAGCTATGCTGTTGCTCTTCTTGAGCTTTTTCCAGCCCTCAAGGGCTCTATTC 553
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GCTTGGCAAGCTATGCTGTTGCTCTTCTTGAGCTTTTTCCAGCCCTCAAGGGCTCTATTC 541
Query 554 CTCTCTGGATGGGAAGCGGCAAAGAGCT-CTTGGGAGGGCTTCTCTCTTTGAATATTTTG 612
|||||||||||||||||||| ||||||| | | ||||||||||||||||| ||||| |||
Sbjct 542 CTCTCTGGATGGGAAGCGGCGAAGAGCTGC-TAGGAGGGCTTCTCTCTTTAAATATCTTG 600
Query 613 GCTCCCATTTTACTTGCTCTCTTGACCCTTGTTCTATGCCAAGGTGTGCGAGAATCTTCC 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCTCCCATTTTACTTGCTCTCTTGACCCTTGTTCTATGCCAAGGTGTGCGAGAATCTTCC 660
Query 673 GCTGTCAACTCCGTTATGACTGCTACTAAGGTCGTGATCGTTCTCGTTGTGATTTGTGCC 732
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 661 GCTGTCAACTCCGTTATGACTGCTACTAAGGTCGTGATTGTTCTCGTTGTGATTTGTGCT 720
Query 733 GGTGCTTTTGAAATTGATGTAGCAAATTGGTCTCCTTTTGCGCCTAATGGTTTTAAAGCA 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGTGCTTTTGAAATTGATGTAGCAAATTGGTCTCCTTTTGCGCCTAATGGTTTTAAAGCA 780
Query 793 GTTCTCACTGGAGCTACTGTTGTCTTCTTTTCATATGTTGGATTTGATGCAGTTGCTAAT 852
||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 781 GTTCTGACTGGAGCTACTGTAGTCTTTTTTTCATATGTTGGATTTGATGCGGTTGCTAAT 840
Query 853 TCTGCTGAAGAATCGAAGAACCCTCAGCGCGATTTGCCAATCGGAATTATGGGGAGCCTT 912
|||||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||
Sbjct 841 TCTGCTGAAGAATCAAAGAACCCTCAGCGTGATCTGCCAATCGGAATTATGGGAAGCCTT 900
Query 913 CTGGTTTGTATCTCGCTGTATATTGGCGTATGTTTGGTGCTCACCGGGATGGTCCCTTTT 972
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 CTGGTTTGTATCTCGCTCTATATTGGCGTATGTTTAGTGCTCACCGGGATGGTCCCTTTT 960
Query 973 AGCCTCCTCAGCGAAGATGCTCCTTTAGCTGAAGCCTTTTCATCAAAGGGTATGAAGTTC 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AGCCTCCTCAGCGAAGATGCTCCTTTAGCTGAAGCCTTTTCATCAAAGGGTATGAAGTTC 1020
Query 1033 GTCTCAATCTTAATCAGTATTGGTGCTGTTGCTGGACTCACAACTACTCTGCTTGTTGGT 1092
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GTCTCAGTCTTAATCAGTATCGGTGCTGTTGCTGGACTCACAACTACTCTGCTTGTTGGT 1080
Query 1093 CTTTATGTTCAGTCCAGGTTATATCTGGGACTTGGAAGGGATGGTCTATTGCCTTCAATC 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTTTATGTTCAGTCCAGGTTATATCTGGGACTTGGAAGGGATGGTCTATTGCCTTCAATC 1140
Query 1153 TTTTCCAGAATACACCCAACTCTTCATACACCTCTTCATTCTCAAATCTGGTGCGGCATT 1212
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1141 TTTTCCAGAATACACCCAACTCTCCATACACCTCTTCATTCTCAAATCTGGTGCGGCATT 1200
Query 1213 GTAGCTGGCG-TTTTAGCTGGCATATTTAATGTACATAGTCTTTCCCATATTCTGTCTGT 1271
||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1201 GTAGCTG-CGGTTTTAGCTGGCATATTTAATGTACATAGTCTTTCCCATATTCTGTCCGT 1259
Query 1272 TGGTACATTGACTGGGTATTCAGTTGTTGCGGCTTGTGTTGTGGCATTGAGACTGAATGA 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TGGTACATTGACTGGGTATTCAGTTGTTGCGGCTTGTGTTGTGGCATTGAGACTGAATGA 1319
Query 1332 TAAAAAAGATAGAGAGTC-GTCCAATAGATGGACATCAAGTTGGCAGGAAGGCGTCATTT 1390
||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TAAAAAAGAAAGAGAGTCCG-CCAATAGATGGACATCAAGTTGGCAGGAAGGCGTCATTT 1378
Query 1391 GCCTTGTTATAATTGCATGCAGTGGTTTTGGTGCTGGCGTATTTTACCGTTTCAGTGCTT 1450
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1379 GCCTTGTTATAATTGCATGCAGTGGTTTTGGTGCTGGCATATTTTACCGTTTCAGTGCTT 1438
Query 1451 CAGTTATATTTATTCTCCTCTCAGTTGGTGTGGCAGTTGTTGCTTCAGCAGTTCTTCATT 1510
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 CACTTATATTTATTCTCCTCTCAGTTGGTGTGGCAGTTGTTGCTTCAGCAGTTCTTCATT 1498
Query 1511 ATCGCCAAGCTTATGCTCTGCCTCTAGGTTCTGGGTTTAGCTGTCCTGGTGTACCCATTG 1570
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1499 ATCGCCAAGCTTATGCTCAGTCTCTAGGTTCTGGGTTTAGCTGTCCTGGTGTACCCATTG 1558
Query 1571 TGCCATCCGTTTGCATTTTCTTCAACATCTTCTTATTTGCTCAGTTGCATTATGAAGCAT 1630
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TGCCATGCGTTTGCATTTTCTTCAACATCTTCTTATTTGCTCAGTTGCATTATGAAGCAT 1618
Query 1631 GGATAAGATTTGTTGTTGTCAGTGTGCTTGCAACTGCCGTTTATGCCTTGTATGGGCAGT 1690
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1619 GGATAAGATTTGTTGTAGTCAGTGTGCTTGCAACTGCCGTTTATGCTTTGTATGGGCAGT 1678
Query 1691 ACCACGCAGATCCGAGCATGTTGGATTATCAGAGGGCACCTGAAACTGAAAGCGACGCTT 1750
||||||||||| | |||| | ||| ||||||||||||||||||||||||||||||| | |
Sbjct 1679 ACCACGCAGATACAAGCACGCTGGTTTATCAGAGGGCACCTGAAACTGAAAGCGACTCGT 1738
Query 1751 AGTAATGCTACATTATAGTTGTGTTACTTAAA 1782
||||||||||||||||||||||||| ||||||
Sbjct 1739 AGTAATGCTACATTATAGTTGTGTTGCTTAAA 1770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73476082605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5