BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06040.1
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470616 jgi|Araly1|470616|fgenesh2_kg.1__570__AT1G06040.1 1365 0.0
> Ahg470616 jgi|Araly1|470616|fgenesh2_kg.1__570__AT1G06040.1
Length=1094
Score = 1365 bits (739), Expect = 0.0
Identities = 914/994 (92%), Gaps = 29/994 (3%)
Strand=Plus/Plus
Query 191 TTCTTGAGAAACCTAGATATTTTGGTTTCTTGTAT-C---CGGTGATGAAGATACAGTGT 246
||||||| ||| || ||| |||||||||||||||| | ||||||||||||||||||||
Sbjct 120 TTCTTGACAAAACTTGATTTTTTGGTTTCTTGTATACGGACGGTGATGAAGATACAGTGT 179
Query 247 GATGTGTGTGAGAAAGCTCCGGCGACGGTGATTTGTTGCGCCGACGAAGCTGCTCTCTGT 306
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 180 GATGTGTGTGAGAAAGCTCCGGCGACGGTGATATGTTGTGCCGACGAAGCTGCTCTCTGT 239
Query 307 CCTCAATGCGACATCGAGATTCACGCCGCTAACAAACTCGCTAGCAAGCACCAACGTCTT 366
||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 240 CCTCACTGCGACGTCGAGATTCATGCCGCTAACAAACTCGCTAGCAAGCACCAACGTCTT 299
Query 367 CATCTTAATTCCCTCTCCACCAAATTCCCTCGTTGCGATATCTGCCAAGAGAAGGCAGCT 426
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 CATCTTAATTCTCTCTCCACCGAATTCCCTCGTTGCGATATCTGCCAAGAGAAGGCAGCT 359
Query 427 TTCATTTTCTGTGTAGAGGATAGAGCTCTGCTTTGCAGGGACTGCGATGAATCCATCCAC 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTCATTTTCTGTGTAGAGGATAGAGCTCTGCTTTGCAGGGACTGCGATGAATCCATCCAC 419
Query 487 GTGGCTAATTCTCGATCTGCTAATCACCAGAGGTTCTTAGCCACTGGGATCAAAGTAGCT 546
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTTGCTAATTCTCGATCTGCTAATCACCAGAGGTTCTTAGCCACTGGGATCAAAGTAGCT 479
Query 547 CTGACCTCAACTATATGTAGTAAAGAAATTGAGAAGAATCAACCTGAGCCTTCCAACAAC 606
||||||||||| | || | ||||||||| |||||||| |||||||||||||||||||||
Sbjct 480 CTGACCTCAACGAGCTGCAATAAAGAAATGGAGAAGAACCAACCTGAGCCTTCCAACAAC 539
Query 607 CAACAGAAGGCTAATCAGATTCCTGCTAAATCCACAAGCCAGCAGCAACAACAACCTTCT 666
||||| || ||||||||||||| ||||||||| ||||||||||| ||||||||||||
Sbjct 540 CAACAAAAACCTAATCAGATTCCGGCTAAATCCCCAAGCCAGCAG---CAACAACCTTCT 596
Query 667 TCTGCTACTCCACTTCCCTGGGCTGTTGACGATTTCTTTCACTTCTCTGATATTGAATCC 726
|| |||||||| ||||| |||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 597 TCAGCTACTCCGCTTCCGTGGGCTGTTGACGATTTCTTCCACTTCTCCGATATCGAATCC 656
Query 727 ACCGA-CAAGAAAGGACAGCTTGATCTTGGGGCAGGGGAGTTGGATTGGTTTTCAGACAT 785
|| || | ||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 657 ACTGATC-AGAAAGGGCAGCTTGATCTCGGGGCAGGGGAGTTGGATTGGTTTTCAGACAT 715
Query 786 GGGATTCTTCGGTGATCAGATTAATGACAAGGCTCTTCCTGCAGCTGAAGTTCCTGAGCT 845
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 716 GGGATTCTTCGGTGATCAAATTAATCACAAGGCTCTTCCTGCAGCTGAAGTTCCTGAGCT 775
Query 846 TTCTGTTTCGCATTTAGGTCATGTTCATTCATACAAACCTATGAAGTCAAATGTTTCAC- 904
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 776 TTCTGTTTCGCATTTAGGTCATGTTCATTCATACAAACCCATGAAGTCGAATGTTTC-CT 834
Query 905 ACAAGAAGCCGAGGTTTGAGACCAGATATGATGATGATGATGAGGAACACTTCATTGTCC 964
||||||||||||||| |||| |||| ||||||||||||||||||| ||||| |||||||
Sbjct 835 ACAAGAAGCCGAGGTACGAGATCAGAGATGATGATGATGATGAGGAGCACTTTATTGTCC 894
Query 965 CTGATCTTGGCTAAAAAGCTATATGTAATCTAT--GTGTAGACATTCTTCAATGTAAAAG 1022
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 895 CTGATCTTGGCTAAAAAGCTATATGTAAGCTATATGTGTAGACATTCTTCAATGTAAAAG 954
Query 1023 AACAAACAAGAAACCTATCTGCATGTGTGGAGTTAATGTCATATACATTTT-AGTTTTGT 1081
|| ||||| | ||||||||||| |||||||||||| |||| ||||||||
Sbjct 955 AA-------GAAAC--A-----ATGTGTGGAGTCAATGTCATATACTTTTTTAGTTTTGT 1000
Query 1082 CTTAAGTTGTGTAAGATATGTTGAGAGCTTATAACAAATGTCTGTGT-TTGAGTTTTGTT 1140
| |||| ||||||||||||||||||||||||| | |||||||||||| ||||||||||||
Sbjct 1001 CATAAGGTGTGTAAGATATGTTGAGAGCTTATCATAAATGTCTGTGTGTTGAGTTTTGTT 1060
Query 1141 CATACCTCTTGAACATGGTCTATGCTTAATGCTT 1174
||||||||||||||||||| ||||||||||||||
Sbjct 1061 CATACCTCTTGAACATGGTATATGCTTAATGCTT 1094
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45823746234
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5