BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G06080.1 Length=1220 Score E Sequences producing significant alignments: (Bits) Value Ahg919315 jgi|Araly1|919315|scaffold_100596.1 1585 0.0 Ahg482064 jgi|Araly1|482064|fgenesh2_kg.4__1124__AT2G31360.1 577 8e-164 > Ahg919315 jgi|Araly1|919315|scaffold_100596.1 Length=959 Score = 1585 bits (858), Expect = 0.0 Identities = 928/962 (96%), Gaps = 4/962 (0%) Strand=Plus/Plus Query 74 ATACATAGTTTTATTACAAGATGTCATTGTCAGCCTCGGAGAAGGAGGAGAA-TAACAAG 132 ||||||| |||| || ||||||||||||||||||||| |||||||||||||| | | | Sbjct 1 ATACATAATTTTCTTTCAAGATGTCATTGTCAGCCTCAGAGAAGGAGGAGAACCATC-GG 59 Query 133 AAAATGGCAGCGGACAAGGCTGAGATGGGGAGGAAGAAGAGGGCAATGTGGGAAAGAAAG 192 |||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||| Sbjct 60 AAAATGGCTGCGGACAAGGCTGAGAAGGGGAGGAAGAAGAGGGCATTGTGGGAAAGAAAG 119 Query 193 TGGAAGAGATTGGACATTGTGAAAGCTTTTGCATCTCTCTTTGTCCATTTCCTCTGTCTC 252 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 120 TGGAAGAGATTGGACATTGTGAAAGCTTTTGCTTCTCTCTTTGTGCATTTCCTCTGTCTC 179 Query 253 TTGGCGCCTTTCAATTTCACTTGGCCGGCTTTAAGAGTCGCCCTCATTGTCTATACGGTG 312 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 TTGGCTCCTTTCAATTTCACTTGGCCGGCTTTAAGAGTCGCCCTCATTGTCTATACGGTG 239 Query 313 GGTGGGCTCGGTATCACCGTCTCTTACCACCGAAATTTGGCTCACCGGAGCTTCAAAGTC 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 GGTGGGCTCGGTATCACCGTCTCTTACCACCGAAATTTGGCTCACCGGAGCTTCAAAGTC 299 Query 373 CCTAAATGGCTCGAGTATTTCTTCGCTTATTGCGGCCTTCTTGCCATTCAGGGAGATCCG 432 |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| Sbjct 300 CCTAAATGGCTCGAGTATTTCTTCGCCTATTGTGGCCTTCTCGCCATTCAGGGAGATCCG 359 Query 433 ATTGATTGGGTGAGCACACATCGATACCATCACCAGTTTACAGATTCGGATAGGGACCCA 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 ATTGATTGGGTGAGCACACATCGATACCATCACCAGTTTACAGATTCGGATAGGGACCCA 419 Query 493 CATAGTCCTAACGAAGGATTTTGGTTCAGTCACCTCCTATGGCTATTTGATACCGGTTAT 552 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 420 CATAGTCCTAATGAAGGATTTTGGTTTAGTCACCTCCTATGGCTATTTGATACCGGTTAT 479 Query 553 CTTGTAGAAAAGTGTGGAAGAAGGACAAATGTGGAGGACTTAAAGAGGCAGTGGTACTAT 612 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 480 CTTGTAGAAAAGTGTGGAAGAAGGACAAATGTGGAGGACTTAAAGAAGCAGTGGTACTAT 539 Query 613 AAATTCCTCCAAAGAACAGTCCTTTACCACATTCTAACATTTGGTTTCCTCCTCTATTAC 672 |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 540 AAATTCCTTCAAAGAACAGTCCTTTACCACATTCTAGCATTTGGTTTCCTCCTCTATTAC 599 Query 673 TTTGGTGGTTTGTCTTTTCTTACTTGGGGAATGGGTATTGGGGTAGCAATGGAGCATCAT 732 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 600 TTTGGTGGTTTGTCTTTTCTTACTTGGGGAATGGGTATTGGGGTAGCGATGGAGCATCAT 659 Query 733 GTGACTTGCCTCATAAACTCTCTTTGCCATGTTTGGGGAAGCCGAACTTGGAAGACTAAT 792 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 660 GTGACTTGCCTCATCAACTCTCTTTGCCATGTTTGGGGAAGCCGGACTTGGAAGACTAAT 719 Query 793 GACACTTCCCGTAACGTTTGGTGGCTATCAGTATTCTCGTTTGGAGAGAGCTGGCACAAC 852 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 GACACTTCCCGTAACGTTTGGTGGCTATCAGTATTCTCGTTTGGAGAGAGCTGGCACAAC 779 Query 853 AATCACCACGCCTTCGAATCCTCGGCGAGACAAGGCTTAGAATGGTGGCAAATCGACATT 912 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 780 AATCACCACGCCTTCGAGTCCTCGGCGAGACAAGGCTTGGAATGGTGGCAAATCGACATT 839 Query 913 TCTTGGTATATTGTCCGCTTTCTCGAGATTATCGGTTTGGCTACTGATGTTAAGTTGCCT 972 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 840 TCTTGGTATATTGTCCGCTTTCTCGAGATTATCGGCTTGGCTACTGATGTCAAGTTGCCT 899 Query 973 TCCGAGAGTCAACGTCGTCGTATGGCAATGGTTCGTTGAAGATATGGAACGACGTCTCGT 1032 |||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 900 TCCGAGAGTCAACGACGTCGCATGGCAATGGTTCGTTGAAGAT--GGAACGACGTCTCGT 957 Query 1033 CT 1034 || Sbjct 958 CT 959 > Ahg482064 jgi|Araly1|482064|fgenesh2_kg.4__1124__AT2G31360.1 Length=1302 Score = 577 bits (312), Expect = 8e-164 Identities = 678/851 (80%), Gaps = 40/851 (5%) Strand=Plus/Plus Query 181 TGGGAAAGAAAGTGGAAGAGATTGGACAT-TGTGAAAGCTT-T-TGCATCTCTCTTTGTC 237 ||||| |||| ||||| |||||| || | ||||||| || | || ||| || ||| Sbjct 139 TGGGATAGAAGGTGGAGGAGATTAGA-TTATGTGAAA--TTCTCAGCTTCTTTCACTGTT 195 Query 238 CATTTCCTC-TG-TCTCTTGGCGCC-TTTCAATTTCACTTGGCCGGCT-TTAAGAGTCGC 293 || || ||| || ||||||||| || ||| ||||||| ||| ||||| || | || Sbjct 196 CA-TT-CTCTTGCTCTCTTGGCTCCGTTT-TATTTCACATGGTCGGCTCTT-TGGGT-TA 250 Query 294 CCTCATTG-TCTATACGGTGGGTGGGCTCGGTATCACCGTCTCTTACCACCGAAATTTGG 352 | | ||| | || || | ||||| || |||||||||||||| || || || || |||| Sbjct 251 CGTTTTTGTTTTACACCATCGGTGGTCTTGGTATCACCGTCTCCTATCATCGGAACTTGG 310 Query 353 CTCACCGGAGCTTCAAAGTCCCTAAATGGCTCGAGTATTTCTTCGCTTATTGCGGCCTTC 412 |||||||||| |||||||||||||||||||| |||||| |||| || ||||| | ||||| Sbjct 311 CTCACCGGAGTTTCAAAGTCCCTAAATGGCTTGAGTATCTCTTAGCCTATTGTGCCCTTC 370 Query 413 TTGCCATTCAGGGAGATCCGATTGATTGGGTGAGCACACATCGATACCATCACCAGTTTA 472 | || ||||||||||||||||||||||||||||| || ||||| || ||||||||||| | Sbjct 371 TCGCTATTCAGGGAGATCCGATTGATTGGGTGAGTACTCATCGTTATCATCACCAGTTCA 430 Query 473 CAGATTCGGATAGG-GACCCACATAGTCCTAACGAAGGATTTTGGTTCAGTCACCTCCTA 531 | ||||| || | | || ||||||||||| || ||||| |||||||| ||||| || || Sbjct 431 CGGATTCAGA-ACGTGATCCACATAGTCCCAAGGAAGGTTTTTGGTTTAGTCATCTTCTT 489 Query 532 TGGCTATTTGA-TACCGGTTATCTTGTAGAAAAGTGTGGAAGAAG-GACAAATGTGGAGG 589 ||| | | ||| | | | |||||||| |||||||||||||||| | |||||||||||| Sbjct 490 TGGATCTATGACT-CTGCCTATCTTGTTCAAAAGTGTGGAAGAAGAG-CAAATGTGGAGG 547 Query 590 ACTTAAAGAGGCAGTGGTACTATAAATTCCTCCA-AAGAACAGTCCT-TTACCACATTCT 647 | || |||||||| |||| || || || || || |||||| || || | ||||| | Sbjct 548 ATTTGAAGAGGCAATGGTTTTACCGGTTTCTTCAGAA-AACAGTGCTATTTC-ACATTTT 605 Query 648 AACATTTGGTTTCCTCCTCTAT-TA-CTTTGGTGGTTTGTCTTTTC-TTACTTGGGGAAT 704 | ||| || ||| | |||| | || ||| ||||| |||| || | ||||||||||||| Sbjct 606 AGGATTGGGCTTCATTCTCT-TCTATCTT-GGTGGCATGTCCTT-CGTTACTTGGGGAAT 662 Query 705 GGGTATTGGGGTAGCAATGGA-GCATCATGTGACTTGCCTCATAAACTCTCTTTGCCATG 763 ||| | || | ||| |||| | || |||||||||||||||||||| || |||||| Sbjct 663 GGGGGTAGGAGCAGCGTTGGAAGTG-CACGTGACTTGCCTCATAAACTCACTCTGCCATA 721 Query 764 TTTGGGGAAGC-CGAACTTGGAAGACTAATGACACTTCCCGTAACGTTTGGTGGCTATCA 822 ||||||| | | |||||||||||||| ||||||||||| ||||| ||||||||| |||| Sbjct 722 TTTGGGGCA-CTCGAACTTGGAAGACCAATGACACTTCTCGTAATGTTTGGTGGTTATCG 780 Query 823 GTATTCTCGTTTGGAGAGAGCTGGCACAACAATCACCACGCCTTCGAATCCTCGGCGAGA 882 ||||| || ||||||||||| |||||||||||||| || || ||||| || ||||| ||| Sbjct 781 GTATTTTCATTTGGAGAGAGTTGGCACAACAATCATCATGCGTTCGAGTCATCGGCTAGA 840 Query 883 CAAGG-CTTAGAATGGTGGCAAATCGACATTTCTTGGTATATTGTCCGCTTTCTCGAGAT 941 ||||| ||| ||||||||||||||||||||||| ||||| ||||| || ||| ||||||| Sbjct 841 CAAGGACTT-GAATGGTGGCAAATCGACATTTCGTGGTACATTGTTCGGTTTTTCGAGAT 899 Query 942 TATCGGTTTGGCTACTGATGTTAAGTTGCCTTCCGAGAG-TCAACGTCGTCGTATGGCAA 1000 ||||||||| || || ||||| ||| ||||| | ||| | |||||| ||||||||||| | Sbjct 900 TATCGGTTTAGCGACCGATGTGAAGGTGCCTACGGAG-GCTCAACGACGTCGTATGGCTA 958 Query 1001 TGGTTCGTTGA 1011 | ||||||||| Sbjct 959 TCGTTCGTTGA 969 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45556885815 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5