BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06110.1
Length=1564
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470624 jgi|Araly1|470624|fgenesh2_kg.1__578__AT1G06110.1 2335 0.0
> Ahg470624 jgi|Araly1|470624|fgenesh2_kg.1__578__AT1G06110.1
Length=1533
Score = 2335 bits (1264), Expect = 0.0
Identities = 1456/1547 (94%), Gaps = 19/1547 (1%)
Strand=Plus/Plus
Query 18 GAACTGAAACAGAGCCGACAAAAGCAACCGAGAGAAAGAAAGCGAACAAGGGTTGTTGTC 77
|||||||| ||||| |||||||||||||| ||| |||||||||| ||| || ||||||
Sbjct 1 GAACTGAATCAGAGACGACAAAAGCAACC--GAG--AGAAAGCGAAGAAGTGTCGTTGTC 56
Query 78 TGAGACGACGAAAGCTATGGGTCTAGAGGATGCTGGAGATTTGGTTCTCCACATCGTCTT 137
| || |||||||||| |||| ||||| ||||||||||||||| ||||||||||||| ||
Sbjct 57 T--GA-GACGAAAGCTTTGGGGCTAGAAGATGCTGGAGATTTGATTCTCCACATCGTATT 113
Query 138 ATCCAAAATCGGCCCTGAAAACACCGCGAGAGTGGCTTGTGTCAGTAAACGCCTTAAGGT 197
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 114 ATCCAAAATCGGCCCTGAAAGCACCGCGAGAGTGGCTTGTGTCAGTAAACGCCTTAAGGT 173
Query 198 CTCCGCCTCCGAGGAATCTCTCTGGTCTATCTTCTGCTCCAATGATCTTAATATCTCTAC 257
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 174 TTCCGCCTCCGAGGAATCTCTCTGGTCGATCTTCTGCTCCAATGATCTTAATATCTCTAC 233
Query 258 TCCTCTCGATCCCCATGGAGATCCTGCTCCTTCCTTCAAGAGAGCATATCAATTGTGGAG 317
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 TCCCCTCGATCCCCATGGAGATCCTGCTCCTTCCTTCAAGAGAGCATATCAATTGTGGAG 293
Query 318 GGAGTCATTTAGAATGTATCCTTGGAATCTGGTTAAAAGAGTTAGACTTTGTTGGGACAA 377
|||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||
Sbjct 294 GGAGTCATTTAGAATGTATCCTTGGAATCTCGTTAAGCGCGTTAGACTTTGTTGGGACAA 353
Query 378 CCTCAAACAATGGTTGA-CCTTAAACTTCCCTGAAGCAAAGGCAACACTGAGGAAAGGTG 436
||||||| |||||||| ||| |||||||||||||||||||||||| |||||||||||||
Sbjct 354 GCTCAAACTATGGTTGAGCCT-AAACTTCCCTGAAGCAAAGGCAACTCTGAGGAAAGGTG 412
Query 437 -TCACAGAAGATGATCTTCAAGAATTCGAGACTTCTCTCAAAGTGAAACTTCCT-TTGCC 494
| ||||||||||||||||||||||| ||||||| ||||||||||||||||||| || ||
Sbjct 413 CT-ACAGAAGATGATCTTCAAGAATTGGAGACTTGTCTCAAAGTGAAACTTCCTCTT-CC 470
Query 495 CACAAGGCTTCTCTACCGTTTCGTTGATGGTCAAGAGCTTTCTTCCCCCAATGGGCTTGA 554
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 471 CACTAGGCTTCTCTACCGTTTCGTTGATGGTCAAGAGCTTTCTTCCTCCAATGGGCTTGA 530
Query 555 TGGCTCTTTGGGGCTTATAGGTGGCTATTCCGCTTATTCTCATGACGTTAATGTCTACTT 614
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 531 TGGCTCTTTGGGGCTTATAGGTGGCTATTCTGCTTACTCTCATGACGTTAATGTCTACTT 590
Query 615 GCTACCTCTTAAGGAAGTGATGAGGGAGACAAAGGAAAGTTTCATGCGCGACCTCGGTTT 674
|||||||||||| ||||| || |||||||||||||||| ||||| | ||||||||||
Sbjct 591 GCTACCTCTTAAAGAAGTCATTAGGGAGACAAAGGAAAC---CATGCTCCACCTCGGTTT 647
Query 675 CTCGAGTAGATTAGACCTTATTGTTATGGCTGCATCCGTAGTTGCCAGTCTGAAAATATT 734
||| | |||||| ||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 648 CTCCACCAGATTAAACCTTATCGTTATGGCTGCATCCGTAGTTGCCAGTCTGAAAATCTT 707
Query 735 TTTATTAGACTGCACAACCGGACAGCTTTTTACTGGGACAAGTAACCGCCAATTGCTTCC 794
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 TTTATTAGACTGCACAAACGGACAGCTTTTTACTGGGACAAGTAACCGCCAATTGCTTCC 767
Query 795 TTGTGTACCCGATGCTTTGGTTAGATCGGTTCATGATACCAACGGCGATCAGCAACAGGA 854
||||||||||||| ||||||||||||| || ||||||| |||||| ||||||||||||||
Sbjct 768 TTGTGTACCCGATTCTTTGGTTAGATCCGTGCATGATATCAACGGGGATCAGCAACAGGA 827
Query 855 TGCCATGCTGCTTTGGTTGGAAGAACATGGCCGGCGGTTACAAACCGGCACTATAAATGT 914
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 828 TGCCATGCTGCTTTGGTTGGAAGAACATGGACGGCGGTTACAAACCGGCACTATAAAAGT 887
Query 915 CCGTC-AACAGAACAATGTCAAGAGTATCAGTTTGTTCCCGGAGATTCCTCCCTTGTGTT 973
||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 CCG-CGAACAGCACAATGTCAAGAGTATCAGTTTGTTCCCGGAGATTCCTCCCTTGTGTT 946
Query 974 CTGTCTCCGTAACTAATGGTGTGCAGGTACGTGCTTCGTCTGTTTTTATCCCGGAAATAT 1033
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 CTGTCGCCGTAACTAATGGTGTGCAGGTACGTGCTTCGTCTGTTTTTATCCCGGAAATAT 1006
Query 1034 CGAACCTTCGGGATCAGCCACCGGCATACTGGTATGCATATTCAATCCGGATGTCTCTCA 1093
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1007 CTAACCTTCGGGATCAGCCACCGGCATACTGGTATGCGTATTCAATCCGGATGTCTCTCA 1066
Query 1094 TGCCAGAAGGATGCATCTTGAATGGGACACATCATAGCTCTTGCCAACTGTATTGGAGAC 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 TGCCAGAAGGATGCATCTTGAATGGGACACATCATAGCTCTTGCCAACTGTATTGGAGAC 1126
Query 1154 ATTGGGTTATCCGAGCTGATAATGAAGTGATAGATAATGTTAATGGAGAAGCTGTCATAG 1213
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1127 GTTGGGTTATCCGAGCTGATAATGAAGCGATAGATAATGTTAATGGAGAAGCTGTGATAG 1186
Query 1214 GAAAGTACCCGCTCTTACAAGCCGGGGAGGAAGAGTTTGTGTATGAGAGTTGTTCCAGTT 1273
|||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 1187 GAAAGTACCCGCTCTTACAAGCTGGAGAGGAAGAGTTTGTGTATGAGAGTTGTTCTAGTT 1246
Query 1274 TTCCGACAACTGCTGGATCCATTGATGGCTCTTTCACCTTTGTACCTGGAAGTTTGAGAG 1333
|||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1247 TTCCAACAACTGCTGGATCCATTGAAGGCTCTTTCACCTTTGTGCCTGGAAGTTTGAGAG 1306
Query 1334 ATCCAAAAGGGAGTCAATTCGAAGTCAAAGTCGTAGAGTTTCCTCTGGAGTTACCGGACT 1393
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1307 ATCCAAAAGGGGGTCAATTCGAAGTCAAAGTCGCAGAGTTTCCTCTGGAGTTACCGGACT 1366
Query 1394 ACATCTTCTGAACTCTTTCTGGCACAAGGTTCGTTACTCTTTCAAGATAATTTGTTGTAT 1453
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1367 ACATCTTCTGAACTCTTTCTGGCACAAGGTTCGTTACTCTTTCAAGATAATTCGTTATAT 1426
Query 1454 CG-TTTGCTTTGTCCGTACAGCATGCAATGTCCTAATAAAATAAAGGTGTTGGATCAACT 1512
|| ||| | |||||| ||||||||||||||| || ||||||||||||||| |||||||||
Sbjct 1427 CGGTTTTCATTGTCCATACAGCATGCAATGTACTTATAAAATAAAGGTGTGGGATCAACT 1486
Query 1513 GGTTTACAAGTTCATGAGAACAGATTATTCTTAACAGTTTTACATAA 1559
|||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1487 GGTTTACAAGTTCATGAGAACACATTATTCTTAACAGTTTTACTTAA 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58582796810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5