BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G06180.1 Length=912 Score E Sequences producing significant alignments: (Bits) Value Ahg470636 jgi|Araly1|470636|fgenesh2_kg.1__590__AT1G06180.1 1190 0.0 > Ahg470636 jgi|Araly1|470636|fgenesh2_kg.1__590__AT1G06180.1 Length=861 Score = 1190 bits (644), Expect = 0.0 Identities = 762/816 (93%), Gaps = 19/816 (2%) Strand=Plus/Plus Query 103 ATGGGGAGAAGACCATGCTGTGAGAAGATAGGATTGAAGAAAGGGCCATGGAGTGCTGAA 162 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 59 ATGGGAAGAAGACCATGCTGTGAGAAAATAGGATTGAAGAAAGGGCCATGGAGTGCTGAA 118 Query 163 GAAGATCGAATCTTGATCAATTATATTAGTCTCCATGGCCATCCCAATTGGAGAGCTCTC 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 GAAGATCGAATCTTGATCAATTATATTAGTCTCCATGGCCATCCCAATTGGAGAGCTCTC 178 Query 223 CCTAAACTAGCCGGGCTACTTCGGTGCGGAAAAAGTTGCAGGCTTCGTTGGATTAATTAT 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 CCTAAACTAGCCGGGCTACTTCGGTGCGGAAAAAGTTGCAGGCTTCGTTGGATTAATTAT 238 Query 283 TTGAGACCAGACATCAAACGTGGCAATTTCACTCCTCATGAAGAAGATACTATCATCAGC 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 239 TTGAGACCAGACATCAAACGTGGCAATTTCACTCCTCATGAAGAAGATACTATCATCAAC 298 Query 343 TTACATCAACTCTTAGGCAACAGATGGTCTGCGATAGCTGCAAAATTGCCTGGACGAACA 402 ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 299 TTACATCAAATCTTAGGCAACAGATGGTCTGCGATAGCTGCAAAATTGCCAGGACGAACA 358 Query 403 GACAACGAAATTAAAAATGTTTGGCACACTCATTTAAAGAAAAGACTCCACCACAGTCAA 462 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 359 GACAACGAAATTAAAAATGTTTGGCACACTCATTTAAAGAAAAGACTCCACCATAATCAA 418 Query 463 GATCAAAACAACAAGGAAGATTTCGTCTCTACTACAGCTGCGGAGATGCCAACCTCTCCG 522 |||||||| ||||||||| ||||||||||||||||||||||||||| || | | Sbjct 419 GATCAAAATAACAAGGAAAATTTCGTCTCTACTACAGCTGCGGAGAGGC-----T----G 469 Query 523 CAACAACAATCTAGTAGTAGTGCCGACATTTCAGCAATTACAACATTGGGAAACAACAAT 582 |||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||||| || Sbjct 470 CAACAACAATCTAGCAGTAGCGCCGACATTTCAGAAATTACAACATCGGGAAACAATAAC 529 Query 583 GACATCTCCAATAGCAACAAAGACTCCGCGACGTCATCCGAAGATGTTCTTGCAATTATA 642 ||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 530 GACATCTCCAATAACAACAAAGACTCTGCGACGTCATCCGAAGATGTTCTTGCAGTTATA 589 Query 643 GATGAGAGCTTTTGGTCAGAAGTGGTATTGATGGACTGTGACATTTCAGGAAATG---AG 699 ||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||| || Sbjct 590 GATGAGAGCTTTTGGTCAGAAGTCGTATTGATGGACTGTAACATTTCAGGAGATGGTGAG 649 Query 700 AAGAATGAGAAAAAGATAGAGAATTGGGAGGGCTCACTAGATAGAAACGATAAGGGATAT 759 |||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||| Sbjct 650 AAGAATGAGAAAAAGATAGAGAATTGGGAGGGCTCATTAGATAAAAATGATAAGGGATAT 709 Query 760 AACCATGACATGGAGTTTTGGTTTGACCATCTCACTAGTAGTAGTTGTATAATTGGAGAA 819 |||||||||||||||||||||||||||||||||||||||||| || ||| |||||||| Sbjct 710 AACCATGACATGGAGTTTTGGTTTGACCATCTCACTAGTAGTCGT---ATAGTTGGAGAA 766 Query 820 ATGTCCGACATTTCTGAGTTTTGATTTGTTTTAGTTAAAGACTTATATAT-C-TTCC-TT 876 || | ||||||||||||||||||||||||||||||||| ||||||||| | | || || Sbjct 767 ATTTGCGACATTTCTGAGTTTTGATTTGTTTTAGTTAA-GACTTATATCTTCCTTTAATT 825 Query 877 TGTGACCCACATGAATAAAAGTCGTTTACGTTTCCT 912 ||| ||||||||||||||| |||||||||| ||||| Sbjct 826 TGTAACCCACATGAATAAATGTCGTTTACGCTTCCT 861 Score = 60.2 bits (32), Expect = 3e-08 Identities = 34/35 (97%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 44 CTTCTTCCATTTCTTCTTTCTCTCCTCGTTTAAAT 78 |||| |||||||||||||||||||||||||||||| Sbjct 26 CTTCCTCCATTTCTTCTTTCTCTCCTCGTTTAAAT 60 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33815027379 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5