BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06210.1
Length=1481
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311699 jgi|Araly1|311699|fgenesh1_pm.C_scaffold_1000479 1868 0.0
> Ahg311699 jgi|Araly1|311699|fgenesh1_pm.C_scaffold_1000479
Length=1152
Score = 1868 bits (1011), Expect = 0.0
Identities = 1105/1152 (96%), Gaps = 0/1152 (0%)
Strand=Plus/Plus
Query 108 ATGGACAAATTGAAGATAGCAGAATGGGGAGAGAAGCTGAAGACTGGTGGAGCTCAGATG 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGACAAATTGAAGATAGCAGAATGGGGAGAGAAGCTGAAGACTGGTGGAGCTCAGATG 60
Query 168 AGCAGAATGGTGAGTGAGAAAGTGAAAGATATGCTTCAAGCTCCAACCTTGGAATCCAAA 227
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 61 AGCAGAATGGTGAGTGAGAAAGTGAAAGATATGCTTCAAGCTCCGACCTTGGAATCGAAA 120
Query 228 ATGGTGGATGAAGCTACTTTAGAGACTTTAGAGGAGCCTAATTGGGGAATGAACATGAGG 287
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 121 ATGGTGGATGAAGCTACTTTGGAGACATTAGAGGAGCCTAATTGGGGAATGAACATGAGG 180
Query 288 ATTTGTGCTCAGATTAACAACGATGAGTTTAACGGCACTGAGATTGTTAGAGCTATCAAG 347
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 181 ATATGTGCTCAGATTAACAACGATGAGTTTAACGGCACTGAGATTGTTAGAGCCATTAAG 240
Query 348 AGGAAGATCTCAGGTAAGAGCCCTGTGAGCCAAAGGCTGAGCCTTGAGCTTTTAGAGGCT 407
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 AGGAAGATCTCAGGTAAGAGCCCTGTGAGCCAAAGGCTGAGCCTTGAGCTTTTGGAGGCT 300
Query 408 TGTGCTATGAATTGCGAGAAGGTTTTCTCTGAAGTTGCTTCTGAGAAAGTTCTTGATGAG 467
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 TGTGCTATGAACTGCGAGAAGGTTTTCTCTGAAGTTGCTTCTGAAAAAGTTCTTGATGAG 360
Query 468 ATGGTTTGGTTAATCAAGAACGGAGAAGCTGATTCCGAGAACAGAAAGCGAGCTTTTCAG 527
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 ATGGTTTGGTTGATCAAGAACGGAGAAGCTGATAACGAGAACAGAAAGCGAGCTTTTCAG 420
Query 528 CTTATTAGAGCTTGGGGACAATCCCAAGATCTTACTTATCTTCCTGTTTTCCACCAGACT 587
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 CTTATTAGAGCTTGGGGACAATCCCAAGAACTTACTTATCTTCCTGTTTTCCACCAGACT 480
Query 588 TATATGAGCTTGGAAGGCGAAAATGGATTACACGCTCGAGGTGAAGAGAATTCAATGCCG 647
|||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 481 TATATGGGCTTGGAAGGCGAAAACGGATTACATGCTCGAGGTGAAGAGAATTCAATGCCG 540
Query 648 GGACAAAGTTCTCTGGAGTCTCTTATGCAACGGCCTGTTCCAGTGCCTCCACCTGGTAGC 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGACAAAGTTCTCTGGAGTCTCTTATGCAACGGCCTGTTCCAGTGCCTCCACCTGGTAGC 600
Query 708 TATCCGGTTCCTAATCAAGAACAGGCTCTTGGGGACGATGATGGTCTTGACTATAACTTT 767
||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 601 TATCCAGTTCCTAATCAAGAACTGGCTCGTGGGGACGATGATGGTCTTGACTATAACTTT 660
Query 768 GGGAACTTATCGATAAAGGATAAGAAAGAACAGATTGAGATTACACGGAACAGCCTCGAA 827
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 661 GGAAACTTATCGATAAAGGATAAGAAAGAACAGATTGAGATTACCCGGAACAGCCTCGAA 720
Query 828 TTGCTCTCTAGCATGTTGAATACTGAAGGAAAGCCAAATCACACAGAGGACGATCTAACG 887
|||||| |||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 721 TTGCTCGCTAGCATGTTGAATACTGAAGGGAAGCCGAATCACACAGAGGACGATCTCACG 780
Query 888 GTTAGCCTGATGGAGAAATGCAAGCAATCGCAGCCATTGATTCAAATGATCATAGAGAGT 947
|| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 781 GTAAGCCTGATGGAGAAATGCAAGCAATCGCAGCCGTTGATTCAAATGATTATAGAGAGC 840
Query 948 ACAACAGACGACGAGGGAGTCCTGTTCGAGGCTCTGCATCTGAATGATGAGCTCCAACAA 1007
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 841 ACAACAGACGACGAGGGAGTCCTGTTTGAGGCTCTGCATCTGAATGATGAGCTCCAACGC 900
Query 1008 GTTTTATCTAGTTACAAGAAGCCTGATGAAACCGAAAAGAAAGCCTCCATTGTGGAACAA 1067
||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 901 GTTCTATCTAGTTACAAGAAGCCTGATGAAACCGAGAAGAAAGCGTCCATTGTGGAACAA 960
Query 1068 GAATCATCAGGAAGCAAAGATACTGGTCCGAAACCAACAGAACAAGAAGAACAAGAGCCT 1127
|||||||||||||||||||| |||||||||||||||||||| |||||||| || | |||
Sbjct 961 GAATCATCAGGAAGCAAAGAGGCTGGTCCGAAACCAACAGAAGAAGAAGAAGAACAACCT 1020
Query 1128 GTAAAGAAAACGGGTGCTGATGATGACAAAAAACATTCAGAAGCATCAGGATCCTCCAAC 1187
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1021 GTAAAGAAAACGGGTGATGATGATGACACAAAACATTCAGAAGCATCAGGATCCTCCAAC 1080
Query 1188 AAAACCGTCAAAGAAGAGAAGCAGGCCGTGAAAATAGAACTGGGGCTTTCGAGTGATGAA 1247
||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1081 AAAACCGTCAAAGAAGATAAGCAGGCCGTGAAAATAGAACTCGGGCTTTCTAGTGATGAA 1140
Query 1248 GATGAAAAATAA 1259
||||||||||||
Sbjct 1141 GATGAAAAATAA 1152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421306475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5