BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06430.1
Length=2255
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910330 jgi|Araly1|910330|Al_scaffold_0001_584 3386 0.0
Ahg482018 jgi|Araly1|482018|fgenesh2_kg.4__1078__AT2G30950.1 2193 0.0
> Ahg910330 jgi|Araly1|910330|Al_scaffold_0001_584
Length=2058
Score = 3386 bits (1833), Expect = 0.0
Identities = 1984/2059 (96%), Gaps = 2/2059 (0%)
Strand=Plus/Plus
Query 42 ATGGCTGCTTCATCGGCTTGTCTTCTCGGAAATGGATTATCTGTCTACACAACCAAACAG 101
|||||||||||||| ||||||||| | || | ||||| |||||||||||||||||||||
Sbjct 1 ATGGCTGCTTCATCAGCTTGTCTTATTGGGAGCGGATTGTCTGTCTACACAACCAAACAG 60
Query 102 AGGTTC-CAAAAGCTTGGGCTTGATAGGACATCTAAAGTTACAGTTGTGAAGGCTTCTTT 160
||| || ||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 61 AGG-TCTCAAAAGCTTGGGCTTGATAGGGCATCTAAAGCTACAGTTGTGAAGGCTTCTTT 119
Query 161 GGATGAGAAGAAACATGAAGGGAGAAGAGGTTTCTTTAAACTCTTACTAGGAAACGCTGC 220
|||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 120 GGATGAGAAGAAGCATGAAGGAAGAAGAGGTTTCTTCAAACTCTTACTAGGAAACGCTGC 179
Query 221 TGCTGGAGTTGGTTTGCTTGCAAGTGGAAACGCTAATGCAGACGAACAAGGACAAGGGGT 280
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 AGCTGGAGTGGGTTTGCTTGCAAGTGGAAACGCAAATGCAGACGAACAAGGACAAGGGGT 239
Query 281 TTCTTCGTCTAGAATGTCTTATTCTAGGTTCCTAGAGTATTTAGACAAGGGAAGGGTTGA 340
|||||| ||||| ||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 240 TTCTTCTTCTAGGATGTCTTATTCTAGGTTTCTAGAGTATTTGGATAAGGGAAGGGTTGA 299
Query 341 GAAAGTAGATTTGTATGAGAATGGGACTATAGCTATTGTGGAGGCCGTTTCTCCTGAGTT 400
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 300 GAAAGTAGATTTGTATGAGAATGGGACTATAGCTATTGTTGAGGCTGTTTCTCCTGAGTT 359
Query 401 GGGTAACCGGATTCAGCGTGTACGTGTGCAGCTACCTGGATTGAGTCAGGAGCTTCTCCA 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GGGTAACCGGATTCAGCGTGTACGTGTGCAGCTACCTGGATTGAGTCAGGAGCTTCTCCA 419
Query 461 GAAGTTGAGGGCTAAGAATATTGATTTCGCAGCACATAATGCTCAGGAGGACCAAGGTTC 520
|||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 420 GAAGTTGAGGGCAAAGAATATTGATTTTGCAGCACATAATGCTCAGGAAGACCAAGGTTC 479
Query 521 TCCAATACTCAACTTGATTGGGAATCTTGCATTCCCTGTTATTTTGATTGGCGGTTTGTT 580
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 TCCGATACTTAACTTGATTGGGAATCTTGCATTCCCGGTTATTTTGATTGGCGGTTTGTT 539
Query 581 CCTTCTCTCGAGAAGATCCTCTGGTGGAATGGGTGGCCCTGGTGGTCCTGGCTTCCCACT 640
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CCTTCTATCGAGAAGGTCCTCTGGTGGAATGGGTGGCCCTGGTGGTCCTGGCTTCCCACT 599
Query 641 CCAAATTGGTCAGTCGAAAGCAAAGTTTCAGATGGAACCAAACACTGGTGTAACTTTTGA 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CCAAATTGGTCAGTCGAAAGCAAAGTTTCAGATGGAACCAAACACTGGTGTAACTTTTGA 659
Query 701 TGATGTTGCTGGAGTCGATGAAGCCAAGCAAGATTTCATGGAAGTGGTGGAGTTTCTGAA 760
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 660 TGATGTTGCTGGAGTCGACGAAGCCAAGCAGGATTTCATGGAAGTGGTGGAGTTTCTGAA 719
Query 761 GAAGCCTGAGAGGTTCACTGCGGTTGGTGCCCGGATCCCAAAAGGTGTTCTTCTTGTTGG 820
||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 720 GAAGCCTGAGAGGTTCACTGCAGTTGGTGCCCGGATCCCCAAAGGTGTTCTCCTTGTTGG 779
Query 821 TCCTCCTGGTACCGGGAAAACCCTGTTGGCAAAAGCCATTGCTGGTGAAGCTGGTGTGCC 880
|||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 780 TCCTCCTGGTACTGGGAAAACCCTGCTGGCAAAAGCCATTGCTGGTGAAGCCGGTGTGCC 839
Query 881 CTTCTTTTCCATCTCGGGTTCTGAGTTTGTTGAGATGTTTGTCGGTGTTGGTGCATCAAG 940
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 840 CTTCTTTTCCATCTCGGGTTCTGAGTTTGTTGAGATGTTTGTCGGTGTTGGTGCCTCAAG 899
Query 941 GGTCCGCGATCTTTTCAAAAAAGCCAAAGAAAATGCTCCATGCATTGTTTTCGTGGATGA 1000
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGTCCGCGATCTTTTCAAAAAAGCCAAAGAAAATGCTCCATGCATTGTTTTCGTGGATGA 959
Query 1001 AATAGATGCTGTTGGTAGGCAAAGAGGAACTGGAATTGGTGGAGGTAATGATGAAAGAGA 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AATAGATGCTGTTGGTAGGCAAAGAGGAACTGGAATTGGTGGAGGTAATGATGAAAGAGA 1019
Query 1061 ACAGACCCTTAATCAGCTCCTGACTGAGATGGATGGTTTTGAGGGTAACACTGGTGTTAT 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ACAGACCCTTAATCAGCTCCTGACTGAGATGGATGGTTTTGAGGGTAACACTGGTGTTAT 1079
Query 1121 CGTAGTTGCTGCAACCAACAGAGCAGACATTCTTGACTCCGCTTTGCTAAGACCAGGGCG 1180
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1080 CGTAGTGGCTGCAACCAACAGAGCAGACATTCTTGACTCCGCTTTGCTAAGGCCAGGACG 1139
Query 1181 TTTTGACCGGCAGGTATCTGTTGACGTTCCAGACGTTAAGGGAAGAACAGATATACTCAA 1240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GTTTGACCGGCAGGTATCTGTTGACGTTCCAGACGTTAAGGGAAGAACAGATATACTCAA 1199
Query 1241 GGTTCACTCGGGGAATAAGAAATTTGAAAGCGGTGTTTCACTTGAAGTAATAGCCATGAG 1300
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1200 GGTTCACTCCGGGAATAAGAAATTTGAAAGTGGTGTTTCACTTGAAGTAATAGCCATGAG 1259
Query 1301 AACACCTGGATTTAGCGGAGCTGATCTTGCAAACCTCTTGAACGAGGCTGCCATATTGGC 1360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AACGCCTGGATTTAGCGGAGCTGATCTTGCAAACCTCTTGAACGAGGCTGCCATATTGGC 1319
Query 1361 CGGCCGCCGTGGAAAGACTGCAATATCATCAAAAGAGATTGATGACTCAATTGACAGAAT 1420
|||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 1320 CGGCCGTCGTGGAAAGACTGCTATATCATCAAAAGAGATCGATGACTCAATTGATAGAAT 1379
Query 1421 TGTAGCTGGCATGGAAGGAACAGTCATGACAGATGGGAAGAGCAAAAGCTTGGTTGCTTA 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TGTAGCTGGCATGGAAGGAACAGTCATGACAGATGGGAAGAGCAAAAGCTTGGTTGCTTA 1439
Query 1481 CCATGAAGTTGGCCATGCCATATGTGGAACATTGACTCCAGGGCATGATGCTGTTCAAAA 1540
||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||
Sbjct 1440 CCATGAAGTTGGCCATGCCGTATGTGGAACATTGACTCCAGGACATGATGCTGTCCAAAA 1499
Query 1541 GGTCACGTTGATACCACGAGGCCAGGCTAGAGGTCTGACTTGGTTCATTCCCTCAGATGA 1600
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1500 GGTCACATTGATACCACGAGGCCAGGCAAGAGGTCTGACTTGGTTCATTCCCTCAGATGA 1559
Query 1601 CCCAACTCTAATCTCCAAACAGCAACTCTTTGCAAGAATTGTTGGTGGACTCGGTGGTAG 1660
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1560 CCCAACTCTAATCTCCAAACAGCAGCTCTTTGCAAGAATTGTTGGTGGACTCGGTGGTAG 1619
Query 1661 AGCTGCCGAAGAAGTCATCTTTGGTGAGTCTGAGGTGACTACTGGTGCAGTTAGTGACTT 1720
||| || ||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1620 AGCCGCTGAAGAAGTCATCTTTGGTGAGCCCGAGGTGACTACTGGTGCAGTTAGTGACTT 1679
Query 1721 GCAACAGATCACCGGTTTGGCTAAGCAGATGGTGACAACATTTGGGATGTCTGAAATCGG 1780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1680 ACAACAGATCACCGGTTTGGCTAAGCAGATGGTGACAACATTTGGGATGTCTGAAATTGG 1739
Query 1781 ACCATGGTCGCTAATGGATTCATCGGAGCAAAGCGATGTCATTATGAGGATGATGGCAAG 1840
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1740 ACCATGGTCGCTAATGGATTCATCGGCTCAAAGCGATGTCATTATGAGGATGATGGCAAG 1799
Query 1841 AAACTCAATGTCTGAGAAGCTTGCAAATGATATTGATACAGCGGTGAAGACATTATCAGA 1900
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1800 AAACTCAATGTCTGAGAAGCTTGCAAATGATATCGATACAGCGGTGAAGACATTATCAGA 1859
Query 1901 CAAAGCGTACGAGATAGCTTTGAGCCAGATTAGAAACAATCGTGAAGCCATGGACAAGAT 1960
|||||| |||||||||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 1860 CAAAGCATACGAGATAGCTTTAAGCCACATTAGAAACAATCGTGAAGCAATGGACAAGAT 1919
Query 1961 TGTTGAAATACTTCTTGAGAAAGAGACTATGTCAGGCGATGAATTCCGAGCAATCCTATC 2020
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1920 TGTTGAAATACTTCTTGAGAAAGAGACAATGTCAGGCGATGAATTCCGAGCAGTCCTATC 1979
Query 2021 TGAATTCACAGAAATCCCACCTGAAAACCGTGTTGCTTCTTCAACATCCACATCAACACC 2080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1980 TGAATTCACAGAAATCCCACCTGAAAACCGTGTTGCTTCTTCAACATCCACATCAACACC 2039
Query 2081 AACACCAGCGTCTGTCTGA 2099
||||||||||||||||||
Sbjct 2040 GACACCAGCGTCTGTCTGA 2058
> Ahg482018 jgi|Araly1|482018|fgenesh2_kg.4__1078__AT2G30950.1
Length=2279
Score = 2193 bits (1187), Expect = 0.0
Identities = 1770/2044 (87%), Gaps = 69/2044 (3%)
Strand=Plus/Plus
Query 122 TGA-TAGGACATCTAAAGTTACA-GTTGTGAAGGCTTCTTTGGA--TG-AGAAGAAACAT 176
||| |||||||||||| |||| | || ||||||||||||||||| || |||||||||||
Sbjct 187 TGATTAGGACATCTAAGGTTA-ATGTAGTGAAGGCTTCTTTGGATGTGAAGAAGAAACAT 245
Query 177 GAAGGGAGAAGAG-GTTTCTTTAAACTCTTACTAGGAAACGCTGCTGCTGGAGTTGGTTT 235
||||| ||||||| |||| ||||| |||| ||||||| ||| | || || |||||
Sbjct 246 GAAGGAAGAAGAGATTTTC-TTAAAATCTTGTTAGGAAA---TGC--C-GGGGTCGGTTT 298
Query 236 GCTTGCAAGT-GGAAACGCTAATGCAGACGAACAAGGACAAGGGGTTTCTTCGTCTAGAA 294
| |||||||| ||||| || ||| |||| |||||| | | |||||| |||||||| |
Sbjct 299 GGTTGCAAGTGGGAAA-GCAAATTCAGAGGAACAA-G-C----GGTTTCGTCGTCTAGGA 351
Query 295 TGTCTTATTCTAGGTTCCTAGAGTATTTAGACAAGGGA-AGGGTTG-AGAAAGTAGATTT 352
|||| ||||||||||| ||||||||||| || || ||| |||| || | ||||| |||||
Sbjct 352 TGTCGTATTCTAGGTTTCTAGAGTATTTGGATAA-GGATAGGG-TGAATAAAGTTGATTT 409
Query 353 GTATGAGAATGGGACTATAGCTATTGTGGAGGCCGTTTCTCCTGAGTTGGGTAACCGGAT 412
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 410 GTATGAGAATGGGACTATAGCTATTGTGGAAGCTGTTTCTCCTGAGTTGGGTAACCGGGT 469
Query 413 TCAGCGTGTACGTGTGCAGCTACCTGGATTGAGTCAGGAGCTTCTCCAGAAG-TTGAGGG 471
| ||||||| ||||| |||||||| ||||| ||||||||||||||||||||| || ||||
Sbjct 470 TGAGCGTGTTCGTGTTCAGCTACCGGGATTAAGTCAGGAGCTTCTCCAGAAGCTT-AGGG 528
Query 472 CTAAGAATATTGATTTCGCAGCACATAATGCTCAGGAGGACCAAGGTTCTCCAATACTCA 531
| |||||||||||||| |||||||||||||||||||| |||||||||||| || |||
Sbjct 529 CCAAGAATATTGATTTTGCAGCACATAATGCTCAGGAAGACCAAGGTTCTGTGTTATTCA 588
Query 532 ACTTGATTGGGAATCTTGCATTCCCTGTT-ATTTTGATTGGCGGTTTGTTCCTTCTCTCG 590
|||||||||| |||||||| ||||| ||| |||||||||| |||||||||||||| |||
Sbjct 589 ACTTGATTGGTAATCTTGCTTTCCC-GTTGCTTTTGATTGGTGGTTTGTTCCTTCTTTCG 647
Query 591 AGAAGATCCT-CTGGTGGAATGGGTGGCCCTGGTGGTCCTGGCT-TCCCACTCCAAATTG 648
||| | | || ||||||||||||||| |||||||||||||| | |||||| || |||
Sbjct 648 AGACGCT-CTGGTGGTGGAATGGGTGGACCTGGTGGTCCTGG-TAACCCACTTCAGTTTG 705
Query 649 GTCAGTCGAAAGCAAAGTTTCAGATGGAACCAAACACTGGTGTAACTTTTGATGATGTTG 708
||||||| ||||||||||| || |||||||| |||||||||||||| |||||||||||||
Sbjct 706 GTCAGTCCAAAGCAAAGTTCCAAATGGAACCTAACACTGGTGTAACATTTGATGATGTTG 765
Query 709 CTGGAGTCGATGAAGCCAAGCAAGATTTCATGGAAGTGGTGGAGTTTCTGAAGAAGCCTG 768
||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| || |
Sbjct 766 CTGGAGTTGATGAAGCAAAGCAGGATTTCATGGAAGTGGTGGAGTTTCTGAAGAAACCCG 825
Query 769 AGAGGTTCACTGCGGTTGGTGCCCGGATCCCAAAAGGTGTTCTTCTTGTTGGTCCTCCTG 828
|||| |||||||||||||||||| ||| || ||||||||||| ||| ||||||| ||||
Sbjct 826 AGAGATTCACTGCGGTTGGTGCCAAGATTCCGAAAGGTGTTCTCCTTATTGGTCCCCCTG 885
Query 829 GTACCGGGAAAACCCTGTTGGCAAAAGCCATTGCTGGTGAAGCTGGTGTGCCCTTCTTTT 888
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 886 GTACTGGGAAAACCCTTTTGGCAAAAGCCATTGCTGGTGAAGCTGGTGTGCCTTTCTTCT 945
Query 889 CCATCTCGGGTTCTGAGTTTGTTGAGATGTTTGTCGGTGTTGGTGCATCAAGGGTCCGCG 948
||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 946 CCATCTCTGGTTCTGAGTTTGTTGAGATGTTTGTCGGTGTTGGTGCCTCAAGAGTCCGTG 1005
Query 949 ATCTTTTCAAAAAAGCCAAAGAAAATGCTCCATGCATTGT-TTTCGTGGATGAAATAGAT 1007
|||||||||| |||||||| || || ||||| |||||||| ||| || ||||||||||||
Sbjct 1006 ATCTTTTCAAGAAAGCCAAGGAGAACGCTCCTTGCATTGTCTTT-GTAGATGAAATAGAT 1064
Query 1008 GCTGTTGGTAGGCAAAGAGGAACTGGAATTGGTGGAGGTAATGATGAAAGAGAACAGACC 1067
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1065 GCTGTTGGTAGGCAAAGAGGAACCGGAATTGGTGGAGGTAATGATGAAAGAGAACAGACC 1124
Query 1068 CTTAATCAGCTCCTGACTGAGATGGATGGTTTTGAGGGTAACACTGGTGTTATCGTAGTT 1127
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1125 CTCAATCAGCTCCTAACTGAGATGGATGGTTTTGAAGGTAACACTGGTGTTATCGTAGTT 1184
Query 1128 GCTGCAACCAACAGAGCAGACATTCTTGACTCCGCTTTGCTAAGACCAGGGCGTTTTGAC 1187
||||||||||| ||||||||||||||||| || |||||| | || ||||| || ||||||
Sbjct 1185 GCTGCAACCAATAGAGCAGACATTCTTGATTCTGCTTTGTTGAGGCCAGGACGGTTTGAC 1244
Query 1188 CGGCAGGTATCTGTTGACGTTCCAGACGTTAAGGGAAGAACAGATATACTCAAGGTTCAC 1247
||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1245 CGGCAGGTAAGTGTTGACGTTCCAGACGTTAAGGGGAGAACAGATATTCTCAAGGTTCA- 1303
Query 1248 T-CGGGGAATAAGAAATTTGA-AAGCGGTGTTTCACTTGAAGTAATAGCCATGAGAACAC 1305
| | || |||||||| || || || | ||| ||||||||| ||||||| ||||||||||
Sbjct 1304 TGCCGGTAATAAGAAGTTCGACAAT-GATGTCTCACTTGAAATAATAGCAATGAGAACAC 1362
Query 1306 CTGGATTTAGCGGAGCTGATCTTGCAAACCTCTTGAACGAGGCTGCCATATTGGCCGGCC 1365
| |||||||||||||| ||||| || ||||||||||| || ||||| |||||||||||
Sbjct 1363 CCGGATTTAGCGGAGCAGATCTCGCTAACCTCTTGAATGAAGCTGCTATATTGGCCGGAA 1422
Query 1366 GCCGTG-GAAAGAC-TGCAATATCATCAAAAGAGATTGATGACTCAATTGACAGAATTGT 1423
| || | | ||| | | |||||||| ||||||||||||||||| ||||| ||||| ||
Sbjct 1423 GGCGAGCGCG-GACGT-CGATATCATCTAAAGAGATTGATGACTCCATTGATAGAATAGT 1480
Query 1424 AGCTGGCATGGAAGGAACAGTCATGACAGATGGGAAGAGCAAAAGCTTGGTTGCTTACCA 1483
|||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 1481 TGCTGGCATGGAAGGAACAGTGATGACCGACGGGAAGAGCAAAAGCTTGGTTGCTTACCA 1540
Query 1484 TGAAGTTGGCCATGCCA-TATGTGGAACATTGACTCCAGGGCATGATGCTGTTCAAAAGG 1542
||||||||| ||||| | | |||||||||||||||||||| ||||||||||| |||||||
Sbjct 1541 TGAAGTTGGTCATGC-AGTGTGTGGAACATTGACTCCAGGACATGATGCTGTGCAAAAGG 1599
Query 1543 TCACGTTGATACCACGAGGCCAGGCTAGAGGTCTGACTTGGTTCATTCCCTCAGATGACC 1602
| |||||||||||| ||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 1600 TAACGTTGATACCAAGAGGCCAAGCAAGAGGTCTGACTTGGTTCATTCCGTCAGATGACC 1659
Query 1603 CAACTCTAATCTCCAAACAGCAACTCTTTGCAAGAATTGTTGGTGGACTCGGTGGTAGAG 1662
| || || |||||||| || |||||||||||||||||||||||||||||||||||| |||
Sbjct 1660 CGACACTCATCTCCAAGCAACAACTCTTTGCAAGAATTGTTGGTGGACTCGGTGGTCGAG 1719
Query 1663 CTGCCGAAGAAGTCATCTTTGGTGAGTCTGAGGTGACTACTGGTGCAGTTAGTGACTTGC 1722
| || |||||| |||||||||||||| |||||||||||||||| |||||| |||||||||
Sbjct 1720 CCGCTGAAGAAATCATCTTTGGTGAGCCTGAGGTGACTACTGGCGCAGTTGGTGACTTGC 1779
Query 1723 AACAGATCACCGGTTTGGCTA-AGCAGATGGTGACAACATTTGGGATGTCTGAAATCGGA 1781
||||||||||||||||||||| | |||||||| ||||||||||| |||||||| || |||
Sbjct 1780 AACAGATCACCGGTTTGGCTAGA-CAGATGGTAACAACATTTGGAATGTCTGATATTGGA 1838
Query 1782 CCATGGTCGCTAATGGATTCATCGG-AGCAAAGCGATGTCATTATGAGGATGATGGCAAG 1840
||||||||| | ||||||||||| | | ||||| |||||||| ||||| |||||||||||
Sbjct 1839 CCATGGTCGTTGATGGATTCATCAGCA-CAAAGTGATGTCATCATGAGAATGATGGCAAG 1897
Query 1841 AAACTCAATGTCTGAGAAGCTTGCA-AATGATATTGATACAGCGGTGAAGACATTATCAG 1899
|||||| |||||||||||||||||| || || |||||| | || ||||||| | |||| |
Sbjct 1898 AAACTCCATGTCTGAGAAGCTTGCAGAA-GACATTGATTCTGCAGTGAAGAAACTATCCG 1956
Query 1900 ACAAAGCGTACGAGATAGCTTTGAGCCAGATTAGAAACAATCGTGAAGCCATGGACAAGA 1959
||| || || ||||||||| | ||||| || || |||||||||||||||||||| |||
Sbjct 1957 ACAGTGCATATGAGATAGCTCTAAGCCACATAAGGAACAATCGTGAAGCCATGGATAAGC 2016
Query 1960 TTGTTGAAATACTTCTTGAGAAAGAGACTAT-GTCAGGCGATGAATTCCGAGCAATCCTA 2018
| |||||| | ||||| |||||||| || || | | || || |||||| | ||||| ||
Sbjct 2017 TCGTTGAAGTGCTTCTCGAGAAAGAAACAATTGGC-GGTGACGAATTCAGGGCAATTCTT 2075
Query 2019 TCTGAATTCACAGAAATCCCACCTGAAAACCGTGTTGCTTCTTCAACA---TC--C---A 2070
||||| || || ||||||||||| ||||| || ||| ||||||||||| || | |
Sbjct 2076 TCTGAGTTTACTGAAATCCCACCAGAAAATCGGGTTCCTTCTTCAACAACATCAACTCCA 2135
Query 2071 -CATCAACACCAACACCAGCGTCTGTCTGAGTAAGAGACCTTTGAAT-CTCTGTGTATA- 2127
||||| ||||||||||||| || |||| ||||||| | |||| || || |||| |||
Sbjct 2136 GCATCAGCACCAACACCAGCTTCCGTCTAAGTAAGAAA--TTTGTATACT-TGTG-ATAC 2191
Query 2128 TTAT 2131
||||
Sbjct 2192 TTAT 2195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84903156105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5