BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G06460.1 Length=1226 Score E Sequences producing significant alignments: (Bits) Value Ahg910333 jgi|Araly1|910333|Al_scaffold_0001_587 1393 0.0 > Ahg910333 jgi|Araly1|910333|Al_scaffold_0001_587 Length=855 Score = 1393 bits (754), Expect = 0.0 Identities = 826/860 (96%), Gaps = 7/860 (1%) Strand=Plus/Plus Query 148 ATGGAGCATGAATCTATCACCGCTCGACGCAGGCTCGCTGCCTTCGCCGCTCACTTCCCG 207 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1 ATGGAGCATGAATCTATCACCGCTCGACGCAGGCTCGCTGCCGTCGCCGCTCACTTCCCG 60 Query 208 GCAACCAGTTACGATTCCGCCTCCACCGCATCTCTCGTCCCCTTGAACTGCAGCAGCAGT 267 |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 61 CCAACCAGTTACGATCCCGCCTCCACCGCATCTCTCGTCCCCTTGAACTGTAGCAGCAGT 120 Query 268 TTGAACACTGTCATCCAAAGGTGTGACAACAAAATCTCTTTTGCCCGGCAAGCATCATCT 327 |||||| ||||||||| |||||||||||||||||||||||| ||||| |||||||||||| Sbjct 121 TTGAACTCTGTCATCCTAAGGTGTGACAACAAAATCTCTTTCGCCCGCCAAGCATCATCT 180 Query 328 GAACAGGGCTTT-TTTATGAGGCCAGCTTCACCCGATGATGTCCTTGAGAACTTAGGTAT 386 |||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 181 GAACAGGG-TTTCTTTATGAGGCAAGCTTCACCCGATGATGTCCTTGAGAACTTAGGCAT 239 Query 387 GAATTTGAAGAACACTGTCGTTAGAAGGGGTGACAACAGGCTGTATTTTGCTCGGCAAGC 446 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 240 GAATTTGAAGAACTCTGTCATTAGAAGGGGTGACAACAGGCTGTATTTTGCTCGGCAAGC 299 Query 447 ATCTTCTGCACAAGGtttttttATGAGACAGGCTTCGACTAATGAGAGGACCATACCACA 506 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 300 ATCTTCTGCACAGGGTTTTTTTATGAGACAGGCTTCTACTAATGAGAGGACCATACCACA 359 Query 507 TGATGCTGCTGCATCTACCAAGTTTTCTGCTACCAAAACAACTGGCTTCGATTCTTCTTC 566 | | ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 360 -G--GATGCTGCATCTACCAAGTATTCTGCTACCAAAACAACTGGCTTCGATTCTTCTTC 416 Query 567 ACCTGCGTACGCTGCACCACACTTTTCTAAGCCTGCAAAAGAGGACATCTTTTTTCCTTC 626 ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 417 ACCTGCGTACGCTGCACCACACTTTTCTAAGCCTGCAAAAGAGGATTTCGTTTTTCCTTC 476 Query 627 TTTATCACCAAATCTGCAAAAGGAAAGGCCTAAGCTTGATCTTCCTAAGTTAGCCAATTT 686 | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 477 TGTATCACCAAATCTGCGAAAGGAAAGGCCTAAGCTTGATCTTCCTAAGTTAGCCAATTT 536 Query 687 AGGTACTGTTTGGTCTCCCAGATCGAATGTTGCTGAAT-CGACACACAGCTATGTTGTGG 745 |||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||| Sbjct 537 AGGTACTGTTTGGTCTCCGAGATCGAATGTTGCTGAATCCGA-ACACAGCTATGTTGTGG 595 Query 746 CAATAGAGCTACCAGGAGCCAGTATCAATGATATAAGAGTGGAGGTTGACAACACAAACT 805 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 596 CAATAGAGCTACCAGGGGCCAGTATCAATGATATAAGAGTGGAGGTCGACAACATAAACT 655 Query 806 TGACTGTGACAGGTAGACGCACATCTATCTGTCAAAAAGTTGATGCAGGCACCAAAGCTT 865 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 TGACTGTGACAGGTAGACGCACATCTATCTGTCAAAAAGTTGATGCAGGCACCAAAGCTT 715 Query 866 CGATCCTTGGATATCATAAGCAAGAAATACTACAAGGACCATTCAAAGTTTCCTGGCCAC 925 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 716 CAATCCTTGGATATCATAAGCAAGAAATACTACAAGGACCATTCAAAGTTTCCTGGCCAC 775 Query 926 TCCCCAGCAATGTGAACAAGGATAATGTTTCCGCTGAATTTATGGATGGGATTCTGAGAA 985 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 776 TCCCCAGCAATGTGAACAAGGATAATGTTTCCGCTGAATTTATGGATGGGATTCTGAGAA 835 Query 986 TAGTAATTCCAAAGCTTTGA 1005 |||| ||||||||||||||| Sbjct 836 TAGTTATTCCAAAGCTTTGA 855 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45785623317 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5