BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06510.1
Length=1147
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919368 jgi|Araly1|919368|scaffold_100649.1 1175 0.0
> Ahg919368 jgi|Araly1|919368|scaffold_100649.1
Length=858
Score = 1175 bits (636), Expect = 0.0
Identities = 741/790 (94%), Gaps = 13/790 (2%)
Strand=Plus/Plus
Query 129 TGCTTCT-CTGCCACCGCAAATTCTGACCTTCTTCGCTCCCAGCTTGATCGGCTTCACGC 187
||||||| | | ||| |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 74 TGCTTCTGC-GTCACAGCAAATTCCGACCTTCTTCGCTCCCAGCTCGATCGGCTTCACGC 132
Query 188 GGAGGCAGAGTCCACTCGTGCCAAAGCAAACAGTAATAGGTTGAGACTTTTGAGATTATC 247
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 133 GGAGGCAGAGTCCACCCGTGCCAAAGCAAACAGTAATAGGTTGAGACTTCTGAGATTATC 192
Query 248 TGAGGCTGCAGAGAATCTACGGGAACAAGCAGCTGTCAATGTTCGAACAGGGAAAGAGAA 307
||||||||| ||||||||||| ||||||||||||| ||||||| |||||||||||||||
Sbjct 193 TGAGGCTGCTGAGAATCTACGCAAACAAGCAGCTGTGAATGTTCAAACAGGGAAAGAGAA 252
Query 308 TGATGCCAGAGA-TCTACTTCTTCAGAAGAAAAAAGTTATGCAAGCTTTGGACAAGGCTA 366
|||||| ||||| | ||||| ||||||||||||| ||||||||||||||||||||||| |
Sbjct 253 TGATGCAAGAGAGT-TACTTGTTCAGAAGAAAAAGGTTATGCAAGCTTTGGACAAGGCAA 311
Query 367 AAGCTCGTATCGAGTTGCTCGATACGCTTTCTTCCAAACTTAACGAGGCAATATCTGTCA 426
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 312 AAGCTCGTATTGAGTTGCTCGATACGCTTTCTTCTAAACTTAACGAGGCAATATCTGTCA 371
Query 427 AGGAAACACAGCTGATAGGCAATATATCTTTGGATCTCGAAGAGGATGGAGAGAATA--- 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 AGGAAACACAGCTGATAGGCAATATATCTTTGGATCTCGAAGAGGATGGAGAGAATAGTA 431
Query 484 CTTCAGGTGGTATCCACATTGTATCGCCAAAGCCCGAATCTACTGAAGACGGGGTCGAAA 543
|||||||||| |||||||||||||||||||||||| |||||||||||||| || || ||
Sbjct 432 CTTCAGGTGGAATCCACATTGTATCGCCAAAGCCCAAATCTACTGAAGACAGGCACGCAA 491
Query 544 ATGACCACACTCACTTGGATTCTGAGGGAATTCAACTTATTGAAAGGAATGT-TGAGGAT 602
||||| |||||||||||||||||| ||||| ||||||||||||||||||| | |||||||
Sbjct 492 ATGACTACACTCACTTGGATTCTGTGGGAAGTCAACTTATTGAAAGGAAT-TCTGAGGAT 550
Query 603 TACCAAGAACTTCTTGATACCAATAATAATGTACTAGAAGATGTTTCAA-TAGGTAGCAT 661
|||||||||||||| |||||| ||||| ||||||||||||||||||||| | ||||||||
Sbjct 551 TACCAAGAACTTCTCGATACCGATAATCATGTACTAGAAGATGTTTCAACT-GGTAGCAT 609
Query 662 CCTGAAAGAAGTGTCTTCTTATGAATCTTTCTTGGAAAATTTAGACCAGAAACTTAGCAG 721
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 CCTTAAAGAAGTGTCTTCTTATGAATCTTTCTTGGAAAATTTAGACCAGAAACTTAGCAG 669
Query 722 AATCGAAGCTGAACTAGTTACTGTTGTAAATGTTGCATCCTTGGTGCTTAATCATGAAGA 781
|||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||
Sbjct 670 AATCGAAGCTGAACTAGTCACTGTTGTGAATGTTGCATTCTTGGTGCTTAATCATGAAGA 729
Query 782 TAAACCCAAGAATCTTAAGGTTCAGCAGACTGCAGAAATTCTTGAAGAGATTCGTCGTGT 841
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 TAAACCCAAGAATCTAAAGGTTCAGCAGACTGCAGAAATTCTTGAAGAGATTCGTCGTGT 789
Query 842 GAGGGAAAGAATCGCAAATATCATTTGCAAAGAGGCAAACATCAGTTAGTGTGC-TTCAA 900
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 790 GAGGGAAAGAATCGCAGATATCATTTGCAAGGAGGCAAACATCAGTTAGTGTGCATT-AA 848
Query 901 GCATTACTTA 910
||||||||||
Sbjct 849 GCATTACTTA 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42773912874
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5