BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G06570.1 Length=1554 Score E Sequences producing significant alignments: (Bits) Value Ahg919374 jgi|Araly1|919374|scaffold_100655.1 2211 0.0 > Ahg919374 jgi|Araly1|919374|scaffold_100655.1 Length=1425 Score = 2211 bits (1197), Expect = 0.0 Identities = 1353/1429 (95%), Gaps = 8/1429 (1%) Strand=Plus/Plus Query 67 TAGCAGAGTTGGTGAAATCAATGGGCCACCAAAACGCCGCCGTTTCAGAGAATCAAAACC 126 ||||||||||||||||||||||||||||| | |||||||||||||| || | |||| | | Sbjct 1 TAGCAGAGTTGGTGAAATCAATGGGCCACGAGAACGCCGCCGTTTCGGATATTCAACATC 60 Query 127 ATGATGACGGCGCTGCGTCGTCGCCGGGATTCAAGCTCGTCGGATTTTCCAAGTTCGTAA 186 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| | Sbjct 61 ATGATGACGGCGCTGCGTCGTCGCCGGGATTCAAGCTGGTCGGATTCTCCAAGTTCGTTA 120 Query 187 GAAAGAATCCAAAGTCTGATAAATTCAAGGTTAAGCGCTTCCATCACATCGAGTTCTGGT 246 | ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 121 GGAAGAATCCAAAGTCTGATAAATTCAAGGTTAAGCGTTTCCACCACATCGAGTTCTGGT 180 Query 247 GCGGCGACGCAACCAACGTCGCTCGTCGCTTCTCCTGGGGTCTGGGGATGAGATTCTCCG 306 |||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 181 GCGGCGACGCCACCAACGTCGCTCGTCGCTTCTCCTGGGGTCTCGGGATGAGGTTCTCCG 240 Query 307 CCAAATCCGATCTTTCCACCGGAAACATGGTTCACGCCTCTTACCTACTCACCTCCGGTG 366 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 241 CCAAATCCGATCTCTCCACCGGAAACATGGTTCACGCCTCTTACCTACTCACCTCCGGCG 300 Query 367 ACCTCCGATTCCTTTTCACTGCTCCTTACTCTCCGTCTCTCTCCGCCGGAGAGATTAAAC 426 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 301 ACCTCCGATTCCTTTTCACTGCTCCTTACTCTCCGTCTCTCTCCGCCGGAGAAATTAAAC 360 Query 427 CGACAACCACAGCTTCTATCCCAAGTTTCGATCACGGCTCTTGTCGTTCCTTCTTCTCTT 486 |||||| |||||||||||||||||||||||||||| |||||| || ||||||||||||| Sbjct 361 CGACAATGACAGCTTCTATCCCAAGTTTCGATCACGTCTCTTGCCGCTCCTTCTTCTCTT 420 Query 487 CACATGGTCTCGGTGTTAGAGCCGTTGCGATTGAAGTAGAAGACGCAGAGTCAGCTTTCT 546 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CACATGGTCTCGGCGTAAGAGCCGTTGCGATTGAAGTAGAAGACGCAGAGTCAGCTTTCT 480 Query 547 CCATCAGTGTAGCTAATGGCGCTATTCCTTCGTCGCCTCCTATCGTCCTCAATGAAGCAG 606 |||||||||| |||||||| |||||||||||||||||||||||||||||| | ||||||| Sbjct 481 CCATCAGTGTCGCTAATGGTGCTATTCCTTCGTCGCCTCCTATCGTCCTCGACGAAGCAG 540 Query 607 TTACGATCGCTGAGGTTAAACTATACGGCGATGTTGTTCTCCGATATGTTAGTTACAAA- 665 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TTACTATCGCTGAGGTTAAACTATACGGCGATGTTGTTCTCCGATATGTTAGTTACAAAG 600 Query 666 GCAGAAGATACCGAAAAATCCGAATTCTTGCCAGGGTTCGAGCGTGTAGAGGATGCGTCG 725 || ||| | |||| ||||| |||||||||||||| || |||| ||| |||||| ||||| Sbjct 601 GCGGAA-ACACCGGTAAATCGGAATTCTTGCCAGGATTTGAGCCTGTGGAGGATACGTCG 659 Query 726 TCGTTCCCATTGGATTATGGTATCCGGCGGCTTGACCACGCCGTGGGAAACGTTCCTGAG 785 ||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||| Sbjct 660 TCGTTTCCATTGGATTACGGTATACGTCGGCTTGACCACGCCGTGGGAAACGTTCCTGAG 719 Query 786 CTTGGTCCGGCTTTAACTTATGTAGCGGGGTTCACTGGTTTTCACCAATTCGCAGAGTTC 845 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 720 CTTGGTCCGGCTTTGACTTATGTCGCGGGGTTCACTGGTTTTCACCAATTCGCAGAGTTC 779 Query 846 ACAGCAGACGACGTTGGAACCGCCGAGAGCGGTTTAAATTCAGCGGTCCTGGCTAGCAAT 905 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 780 ACAGCAGACGACGTTGGAACCGCCGAGAGCGGTTTAAATTCAGCGGTCCTGGCTAACAAT 839 Query 906 GATGAAATGGTTCTTCTACCGATTAACGAGCCAGTGCACGGAAC-AAAGAGGAAGAGTCA 964 ||||| ||||||||||| ||||||||||||||||||||||| || ||| ||||||||||| Sbjct 840 GATGAGATGGTTCTTCTGCCGATTAACGAGCCAGTGCACGGGACGAAA-AGGAAGAGTCA 898 Query 965 GATTCAGACGTATTTGGAACATAACGAAGGCGCAGGGCTACAACATCTGGCTCTGATGAG 1024 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 899 GATTCAGACGTATTTGGAACACAACGAAGGCGCAGGGCTACAACATCTTGCTCTGATGAG 958 Query 1025 TGAAGACATATTCAGGACCCTGAGAGAGATGAGGAAGAGGAGCAGTATTGGAGGATTCGA 1084 |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct 959 TGAAGACATATTCAGGACTCTGAGAGAGATGAGGAAGAGGAGCAGTGTTGGAGGATTCGA 1018 Query 1085 CTTCATGCCTTCTCCTCCGCCTACTTACTACCAGAATCTCAAGAAACGGGTCGGCGACGT 1144 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1019 CTTCATGCCTTCTCCTCCGCCTACTTACTACCAGAATCTGAAGAAACGGGTCGGCGACGT 1078 Query 1145 GCTCAGCGATGATCAGATCAAGGAGTGTGAGGAATTAGGGATTCTTGTAGACAGAGATGA 1204 ||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1079 GCTGAGCGATGAACAGATCAAGGAGTGTGAGGAATTAGGGATTCTTGTGGACAGAGATGA 1138 Query 1205 TCAAGGGACGTTGCTTCAAATCTTCACAAAACCACTAGGTGACAGGCCGACGATATTTAT 1264 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1139 TCAAGGGACGTTGCTTCAAATCTTCACAAAACCACTTGGTGACAGGCCGACGATATTTAT 1198 Query 1265 AGAGATAATCCAGAGAGTAGGATGCATGATGAAAGATGAGGAAGGGAAGGCTTACCAGAG 1324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 AGAGATAATCCAGAGAGTAGGATGCATGATGAAAGATGAGGAAGGGAAGGCTTACCAGAG 1258 Query 1325 TGGAGGATGTGGTGGTTTTGGCAAAGGCAATTTCTCTGAGCTCTTCAAGTCCATTGAAGA 1384 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 TGGAGGATGTGGTGGCTTTGGCAAAGGCAATTTCTCTGAGCTCTTCAAGTCCATTGAAGA 1318 Query 1385 ATACGAAAAGACTCTTGAAGCCAAACAG-TTAGTGGGATGAACAAGAAGAAGAACCAACT 1443 ||||| ||||||||||||||||||||| || ||||||||||||||| |||||||||||| Sbjct 1319 GTACGAGAAGACTCTTGAAGCCAAACAGCTT-GTGGGATGAACAAGAGGAAGAACCAACT 1377 Query 1444 AAAG-GATTGTGTAATTAATGTAAAACTGTTTTATCTTATCAAAACAAT 1491 ||| | |||||||||||||||| ||||| ||||| ||||||||||||| Sbjct 1378 AAAATG-TTGTGTAATTAATGTATAACTGCTTTATGTTATCAAAACAAT 1425 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58201894360 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5