BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G06680.1 Length=1139 Score E Sequences producing significant alignments: (Bits) Value Ahg470689 jgi|Araly1|470689|fgenesh2_kg.1__643__AT1G06680.1 1768 0.0 > Ahg470689 jgi|Araly1|470689|fgenesh2_kg.1__643__AT1G06680.1 Length=1082 Score = 1768 bits (957), Expect = 0.0 Identities = 1024/1056 (97%), Gaps = 5/1056 (0%) Strand=Plus/Plus Query 3 ACTCTTGGTTTCACCTCCATACATTAACACA--CCAACAATCCTCAAAAAACACTTTCAT 60 ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 ACTCTTGGTTTCATCTCCATACATTAACACACTCCAACAATCCTCAAAAAACACTTTCAT 60 Query 61 AACTTAATCACACACAAGgagagaagagagaaagagagaaagagagacagagaTAATGGC 120 | ||||||||||||||| | |||||||||||||||||| | | ||| |||||||||||| Sbjct 61 AGCTTAATCACACACAA--AAAGAAGAGAGAAAGAGAGATATACAGAGAGAGATAATGGC 118 Query 121 GTACAGTGCGTGTTTCCTACACCAGAGCGCATTGGCTTCATCAGCCGCACGATCATCATC 180 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 119 GTACAGTGCGTGTTTCCTACACCAGAGCGCATTGGCTTCCTCAGCCGCACGATCATCATC 178 Query 181 TTCCTCCTCATCCCAGCGTCACGTGTCGCTCTCCAAACCTGTTCAGATCATCTGTAAAGC 240 ||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| Sbjct 179 TTCCTCCTCATCCCAGCGTCACGTGTCACTCTCCAAACCTGTTCAGATTATGTGTAAAGC 238 Query 241 TCAACAGTCTCATGAAGACGATAACTCCGCCGTCTCCCGCCGTCTTGCTCTCACTCTCCT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 TCAACAGTCTCATGAAGACGATAACTCCGCCGTCTCCCGCCGTCTTGCTCTCACTCTCCT 298 Query 301 CGTCGGCGCCGCTGCTGTTGGTTCCAAAGTATCTCCTGCTGATGCCGCCTACGGTGAAGC 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 CGTCGGCGCCGCTGCTGTTGGTTCCAAAGTATCTCCTGCTGATGCCGCCTACGGTGAAGC 358 Query 361 TGCAAACGTGTTTGGGAAGCCAAAGACGAACACAGACTTCTTGCCATACAATGGAGATGG 420 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 359 TGCAAATGTGTTTGGGAAGCCAAAGACGAACACAGACTTCTTGCCATACAACGGAGATGG 418 Query 421 GTTCAAAGTGCAGGTTCCAGCAAAATGGAACCCAAGCAAAGAGATTGAGTATCCAGGACA 480 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 ATTCAAAGTGCAGGTGCCAGCAAAATGGAACCCAAGCAAAGAGATTGAGTATCCAGGACA 478 Query 481 AGTCCTTAGGTTCGAAGACAACTTCGATGCTACTAGCAATCTCAATGTCATGGTCACTCC 540 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 AGTCCTTAGGTACGAAGACAACTTCGATGCTACTAGCAATCTCAATGTCATGGTCACTCC 538 Query 541 TACCGACAAGAAGTCCATCACTGATTACGGTTCTCCCGAAGAGTTCCTCTCTCAGGTTAA 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 TACCGACAAGAAGTCCATCACTGATTACGGTTCTCCCGAAGAGTTCCTCTCTCAGGTTAA 598 Query 601 TTACCTCCTAGGGAAACAAGCTTACTTCGGTGAGACTGCCTCTGAGGGAGGCTTTGACAA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 TTACCTCCTAGGGAAACAAGCTTACTTCGGTGAGACTGCCTCTGAGGGAGGCTTTGACAA 658 Query 661 CAATGCAGTGGCAACAGCAAACATTCTGGAGTCATCATCTCAGGAAGTTGGTGGGAAACC 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 CAATGCAGTGGCAACAGCAAACATTCTGGAGTCATCATCTCAGGAAGTTGGTGGGAAACC 718 Query 721 CTACTATTACTTGTCTGTGTTGACAAGAACGGCTGATGGAGACGAAGGTGGGAAGCATCA 780 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 CTACTATTACCTGTCTGTGTTGACAAGAACGGCTGATGGAGACGAAGGTGGGAAGCATCA 778 Query 781 GCTGATCACAGCAACCGTGAATGGAGGGAAGCTTTACATCTGCAAAGCACAAGCTGGAGA 840 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 GCTGATCACAGCCACTGTGAATGGAGGGAAGCTTTACATCTGCAAAGCACAAGCTGGAGA 838 Query 841 CAAGAGGTGGTTCAAGGGAGCCAGGAAATTTGTCGAGAGCGCAGCCACTTCTTTCAGTGT 900 ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 839 CAAGAGGTGGTTCAAGGGAGCTAGGAAATTTGTCGAGAGTGCAGCCACTTCTTTCAGTGT 898 Query 901 TGCTTGAGTGAAAGCAACACAACGTAACAATGCTCTGCTTGCTTTCTTCATTTGTCTCTT 960 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 899 TGCTTGAGTGAAAGCAACACAACATAACAATGCTCTGCTTGCTTTCTTCATTTGTCTCTT 958 Query 961 GTAAAAAATGGAAAATGAAACTGAGCTTTTGAGAACTATCAAGATGATGTTACCTTTTCG 1020 |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 959 GTAAAAAATGGAAA-TGAAACTGAGCTTTTGAGAACTATCAAGATGATGTCACCTTTGCG 1017 Query 1021 GCATCACTTGTGTACCTATGATAACAGACTCGTTTT 1056 | |||||||||||||| |||||||||||||||||| Sbjct 1018 GTTTCACTTGTGTACCTGTGATAACAGACTCGTTTT 1053 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42468929538 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5