BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06690.1
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470691 jgi|Araly1|470691|fgenesh2_kg.1__645__AT1G06690.1 2067 0.0
Ahg899762 jgi|Araly1|899762|Al_scaffold_0004_412 436 2e-121
> Ahg470691 jgi|Araly1|470691|fgenesh2_kg.1__645__AT1G06690.1
Length=1361
Score = 2067 bits (1119), Expect = 0.0
Identities = 1248/1311 (95%), Gaps = 5/1311 (0%)
Strand=Plus/Plus
Query 83 TTTTCCAATTTC--AAAACCCAAA-AACAAATCAGCATGGCCATGGCTACGCACTTCACC 139
|||||||||||| |||| ||| ||| |||||||||||||||||||||||||||||||
Sbjct 52 TTTTCCAATTTCAAAAAAAATAAAGAACGAATCAGCATGGCCATGGCTACGCACTTCACC 111
Query 140 TTCCCTTTCAACTATGTTGTTTCCGAAGGCTCTCATGGAAGAAGAAGTTTCGTCCGGAAG 199
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||
Sbjct 112 TTCCCTTTCAACTATGTTGTTTCCGAAGGCTCTCGTGGAAGAGGAAGTTTCGTCCGTAAG 171
Query 200 CTGGTCAGAGCTGTAGCCTCCGGAGATTCCGTGGCTCCGGCGATTTCGGAAGAATCAAAA 259
||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 172 CTGGTCAGAGCTGTAGCCTCCGGTGATTCAGTGGCTCCGGCGATGTCGGAAGAATCAAAA 231
Query 260 GTGAAATTGGGTGGCTCGGATTTGAAAGTGACGAAGCTTGGGATCGGAGTCTGGTCTTGG 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 GTGAAATTGGGTGGCTCGGATTTGAAAGTGACGAAGCTTGGGATCGGAGTCTGGTCTTGG 291
Query 320 GGTGATAACAGCTATTGGAATGATTTCCAGTGGGATGACAGAAAATTGAAGGCGGCTAAA 379
|||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 292 GGTGATAACAGCTACTGGAATGATTTCCAGTGGGATGACAGGAAATTGAAGGCTGCTAAA 351
Query 380 GGTGCTTTCGACACCAGTCTTGACAACGGTATTGATTTTTTCGATACCGCAGAAGTTTAT 439
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 352 GGTGCTTTCGATACCAGTCTTGACAACGGTATTGATTTTTTCGATACCGCTGAAGTTTAT 411
Query 440 GGTTCCAAGTTTTCCCTGGGTGCTATAAGCTCTGAAACTCTTTTAGGAAGATTCATCCGT 499
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 412 GGTTCCAAGTTTTCTCTGGGTGCTATAAGCTCTGAAACTCTTTTAGGAAGATTTATCCGT 471
Query 500 GAGAGAAAAGAGAGATATCCCGGAGCTGAGGTTTCGGTTGCAACCAAGTTTGCTGCATTG 559
|||||||||||||||||||| | ||||||| |||| ||||| || |||||||||||||||
Sbjct 472 GAGAGAAAAGAGAGATATCCTGCAGCTGAGATTTCAGTTGCTACAAAGTTTGCTGCATTG 531
Query 560 CCATGGCGATTTGGTCGTGAAAGTGTTGTCACTGCCCTTAAAGATTCCCTTTCCCGGCTT 619
||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 532 CCATGGCGATTGGGTCGTAAAAGTGTTATCACTGCCCTTAAAGATTCCCTTTCCCGGCTC 591
Query 620 GAGCTTTCATCTGTTGATCTCTATCAACTGCATTGGCCAGGACTATGGGGAAATGAAGGA 679
|||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 592 GAGCTTTCATCTGTAGATCTCTATCAACTCCATTGGCCTGGACTATGGGGAAATGAAGGA 651
Query 680 TATCTTGATGGTCTTGGGGATGCTGTTGAACAAGGACTTGTCAAGGCTGTTGGTGTTTCT 739
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 652 TATCTTGATGGTCTTGGGGATGCTGTTGAACAAGGACTTGTCAAAGCTGTTGGTGTTTCT 711
Query 740 AACTACAGCGAGAAGCGGCTTCGTGATGCTTATGAAAGACTCAAAAAGAGAGGAATTCCT 799
|||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 712 AACTACAGCGAGAAGCGGCTACGTGATGCATATGAAAGACTCAAAAAAAGAGGAATTCCT 771
Query 800 CTGGCCTCAAATCAAGTCAACTACAGTCTGATATACAGAGCTCCAGAGCAGACTGGTGTT 859
|| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 772 CTCGCCTCAAATCAAGTAAACTACAGTCTAATATACAGAGCTCCAGAGCAGACTGGTGTA 831
Query 860 AAGGCTGCTTGTGATGAGCTTGGAGTTACTTTAATTGCATATTCCCCCATCGCTCAAGGT 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 AAGGCTGCTTGTGATGAGCTTGGAGTTACTTTAATTGCATATTCCCCCATCGCTCAAGGT 891
Query 920 GCTCTAACTGGTAAATACACCCCAGAGAACCCACCCTCAGGTCCTCGGGGTCGCATTTAT 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GCTCTAACTGGTAAATACACCCCAGAGAACCCACCCTCAGGTCCTCGGGGTCGCATTTAT 951
Query 980 ACGCGTGAGTTCTTAACAAAGCTTCAACCCCTGTTGAATAGAATCAAACAAATTGGGGAA 1039
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 952 ACGCGTGAGTTTTTAACAAAGCTTCAGCCCCTGTTGAATAGAATCAAACAAATTGGTGAA 1011
Query 1040 AACTACAGCAAAACTCCCACACAGATAGCATTGAACTGGTTGGTGGCACAAGGGAACGTG 1099
|||||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||
Sbjct 1012 AACTACAGCAAAACGCCCACACAGGTAGCGTTGAACTGGTTGGTGGCACAAGGTAACGTG 1071
Query 1100 ATACCCATCCCAGGAGCCAAGAACGCAGAACAAGCCAAAGAGTTTGCTGGAGCGATAGGT 1159
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1072 ATACCCATCCCAGGAGCCAAGAACGCAGAACAAGCCAAAGAGTTTGCGGGAGCGATAGGT 1131
Query 1160 TGGAGTCTGACAGACAATGAAGTGAGTGAGCTACGGTCCCTGGCCTCTGAGATAAAACCC 1219
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1132 TGGAGTCTGACAGACAATGAAGTGAGCGAGCTACGGACCCTGGCCTCTGAGATAAAACCC 1191
Query 1220 GTCGTTGGTTTCCCTGTTGAGTATCTCTGAACTCTTAA-CACTCTGTTTGTAGCATTTGT 1278
||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1192 GTCATTGGTTTCCCTGTTGAGTATCTCTGAACTCTTAAACACTCGGTTTGTAGCATTTGT 1251
Query 1279 AAAGCTCAAAAGTTACAATATGAACTAAAAGTAGTATATAGATGATGGTAAAGTGTTGTA 1338
|||| | ||||||||||||||||| ||||||||||| ||||||||| ||||| |||||||
Sbjct 1252 AAAGATTAAAAGTTACAATATGAATTAAAAGTAGTACATAGATGATAGTAAACTGTTGTA 1311
Query 1339 ATACATATGCAAATAAAATCTTTTTGCCTCTTTGAGAACTTTACAGTAGCC 1389
|||| |||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1312 ATAC-TATGCAAATAAAATCTCTTTGCCTCTTCGAGAACTTTACAGTAGCC 1361
> Ahg899762 jgi|Araly1|899762|Al_scaffold_0004_412
Length=573
Score = 436 bits (236), Expect = 2e-121
Identities = 278/299 (93%), Gaps = 0/299 (0%)
Strand=Plus/Plus
Query 357 ACAGAAAATTGAAGGCGGCTAAAGGTGCTTTCGACACCAGTCTTGACAACGGTATTGATT 416
|||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 224 ACAGGAAATTGAAGGCTGCTAAAGGTGCTTTCGATACCAGTCTTGACAACGGTATTGATT 283
Query 417 TTTTCGATACCGCAGAAGTTTATGGTTCCAAGTTTTCCCTGGGTGCTATAAGCTCTGAAA 476
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 284 TTTTCGATACCGCTGAAGTTTATGGTTCCAAGTTTTCTCTGGGTGCTATAAGCTCTGAAA 343
Query 477 CTCTTTTAGGAAGATTCATCCGTGAGAGAAAAGAGAGATATCCCGGAGCTGAGGTTTCGG 536
||||||||||||| ||||||||||| ||||||||||||| | |||||||||| |||| |
Sbjct 344 CTCTTTTAGGAAGGTTCATCCGTGAAAGAAAAGAGAGATTTTACGGAGCTGAGATTTCAG 403
Query 537 TTGCAACCAAGTTTGCTGCATTGCCATGGCGATTTGGTCGTGAAAGTGTTGTCACTGCCC 596
||||| | |||||||||||||||||||||||||| |||||||||| |||| |||||||||
Sbjct 404 TTGCATCAAAGTTTGCTGCATTGCCATGGCGATTGGGTCGTGAAAATGTTATCACTGCCC 463
Query 597 TTAAAGATTCCCTTTCCCGGCTTGAGCTTTCATCTGTTGATCTCTATCAACTGCATTGG 655
|||||||||||||||||| ||| |||||||||||||| |||||||||||||| ||||||
Sbjct 464 TTAAAGATTCCCTTTCCCTGCTCGAGCTTTCATCTGTAGATCTCTATCAACTCCATTGG 522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51917003935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5