BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G06700.1 Length=1535 Score E Sequences producing significant alignments: (Bits) Value Ahg919385 jgi|Araly1|919385|scaffold_100666.1 1884 0.0 Ahg933581 jgi|Araly1|933581|scaffold_401569.1 1136 0.0 Ahg900854 jgi|Araly1|900854|Al_scaffold_0004_1504 944 0.0 > Ahg919385 jgi|Araly1|919385|scaffold_100666.1 Length=1126 Score = 1884 bits (1020), Expect = 0.0 Identities = 1092/1127 (97%), Gaps = 3/1127 (0%) Strand=Plus/Plus Query 163 TATTGAACAAGTAAACAAGGATGCGTAAGTGGATCTGTTGTACATGTCAAATAGAAGACT 222 ||||||| |||| |||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 1 TATTGAAGAAGTGAACAAGGATGCGCAAGTGGATCTGTTGTACATGTCAGATAGAAGACT 60 Query 223 CAAATGAAGAGCAACAACTGAAAAGTTCACAGCAGCAATCTGATGCAAATCATAAGAATT 282 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 61 CAAATGAAGAGCAACAACTGAAAAGTTCGCAGCAGCAATCTGATGCAAATCATAAGAATC 120 Query 283 CAAAACCAGCACCTGTTGCAAAACAT-GAGGTTAAGAAGGAAGCTCTTCCCATCGAGGTC 341 |||||||||||||||||||||||| | ||| | ||||||||||||||||| ||||||||| Sbjct 121 CAAAACCAGCACCTGTTGCAAAAC-TCGAGATGAAGAAGGAAGCTCTTCCAATCGAGGTC 179 Query 342 CCTCCCTTGTCTTTGGATGAGGTCAAGGAAAAGACTGAAAATTTTGGATCCAAGGCACTG 401 ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| Sbjct 180 CCTCCCTTGTCTTTGGATGAGGTGAAGGAAAAGACTGAAAATTTCGGATCGAAGGCACTG 239 Query 402 ATTGGTGAAGGGTCTTATGGGAGAGTATATTATGCGACACTAAATGATGGTGTGGCGGTT 461 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 240 ATTGGTGAAGGGTCTTACGGGAGAGTATATTATGCGACACTAAATGATGGTGTAGCGGTT 299 Query 462 GCTCTGAAGAAACTTGATGTCGCACCTGAAGCTGAAACAGATACCGAATTCTTGAGTCAG 521 ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| Sbjct 300 GCTCTGAAGAAACTTGATGTCGCCCCTGAAGCTGAAACAGATGCCGAATTCTTGAGTCAG 359 Query 522 GTTTCCATGGTCTCTAGGCTGAAGCATGAAAATCTCATTCAATTGCTTGGTTTTTGTGTT 581 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 GTTTCCATGGTCTCTAGGCTGAAGCATGAAAATCTCATTCAATTGCTTGGTTTTTGTGTT 419 Query 582 GATGGAAACCTCCGCGTCCTTGCATATGAGTTTGCAACAATGGGATCGTTGCATGACATC 641 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 420 GATGGAAACCTACGCGTCCTTGCATATGAGTTTGCAACAATGGGGTCGTTGCATGACATC 479 Query 642 TTGCATGGTAGGAAGGGAGTTCAAGGAGCACAACCAGGTCCAACACTTGACTGGATAACG 701 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 480 TTGCATGGTAGGAAGGGAGTTCAAGGGGCACAGCCAGGTCCAACACTTGACTGGATAACG 539 Query 702 AGGGTGAAGATAGCGGTTGAGGCAGCTAGGGGTTTGGAATACCTCCATGAGAAGTCTCAG 761 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 540 AGGGTGAAGATAGCGGTTGAGGCAGCTAGGGGTTTGGAATACCTTCATGAGAAGTCTCAG 599 Query 762 CCTCCTGTAATCCATAGGGACATAAGATCTAGCAATGTCCTTCTTTTTGAAGACTACAAA 821 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 600 CCTCCTGTAATCCATAGAGACATAAGATCTAGCAATGTCCTTCTTTTTGAAGACTACAAA 659 Query 822 GCAAAGATTGCTGATTTCAATCTCTCGAATCAAGCACCTGATAATGCTGCCCGTCTTCAC 881 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 GCAAAGATTGCTGATTTCAATCTCTCGAATCAAGCACCTGATAATGCTGCCCGTCTTCAC 719 Query 882 TCAACAAGAGTCTTGGGGACTTTTGGTTATCATGCTCCAGAATATGCAATGACTGGACAG 941 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 720 TCAACAAGAGTCTTGGGGACTTTTGGTTATCATGCTCCGGAATATGCAATGACTGGACAG 779 Query 942 TTAACTCAGAAGAGTGATGTGTACAGCTTTGGTGTTGTACTTCTAGAACTTCTTACAGGG 1001 || ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 780 TTGACTCAGAAGAGTGATGTGTACAGCTTTGGGGTTGTTCTTCTAGAACTTCTTACAGGG 839 Query 1002 AGGAAACCGGTGGATCATACCATGCCTAGAGGTCAACAGAGTCTTGTAACCTGGGCGACA 1061 |||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 840 AGGAAACCAGTGGATCATACCATGCCTCGGGGTCAACAGAGTCTTGTAACCTGGGCGACA 899 Query 1062 CCAAGACTCAGTGAAGATAAAGTGAAACAGTGCATTGATCCAAAGCTAAAAGCCGATTAC 1121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 CCAAGACTCAGTGAAGATAAAGTGAAACAGTGCATTGATCCAAAGCTAAAAGCCGATTAC 959 Query 1122 CCTCCAAAAGCAGTTGCTAAGCTAGCAGCGGTGGCAGCATTGTGTGTGCAATACGAAGCT 1181 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 960 CCTCCAAAAGCAGTTGCTAAGCTAGCAGCAGTGGCAGCATTGTGTGTGCAATACGAAGCT 1019 Query 1182 GAGTTTAGACCAAATATGAGCATAGTTGTGAAGGCGCTACAGCCTCTCCTGAAACCTCCA 1241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 GAGTTTAGACCAAATATGAGCATAGTTGTGAAGGCGCTACAGCCTCTCCTGAAACCTCCA 1079 Query 1242 GCAGCAGCTCCAGCACCAGAATCTTGAAACT-TTTAAATCttttttt 1287 || |||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 1080 GCCGCAGCTCCAGCACCAGAATCTTGAAACTCTTTTAATCTTTTTTT 1126 > Ahg933581 jgi|Araly1|933581|scaffold_401569.1 Length=1136 Score = 1136 bits (615), Expect = 0.0 Identities = 913/1057 (86%), Gaps = 20/1057 (2%) Strand=Plus/Plus Query 222 TCAAATGAAGAGCAACAACTGAAAAGTTCACAGCAGCAATCTGATGCAAATCATAAGAAT 281 |||||||| ||| || ||||||||| || |||||||||||| |||||||| ||||| Sbjct 69 TCAAATGAGGAGGTGCATCTGAAAAGTCCATGGCAGCAATCTGACGCAAATCAAAAGAA- 127 Query 282 TC-AAAACCAGCACCTGTTGCAAAACATGAGGTTAAGAAGGAAGCTCTTCCCATCGAGGT 340 || ||||||| || |||||||||||| ||||| |||||||||||||||||||||| || Sbjct 128 TCAAAAACCACCAGCTGTTGCAAAACCTGAGGCGCAGAAGGAAGCTCTTCCCATCGAAGT 187 Query 341 CCCTCCCTTGTCT-TTGGATGAGGTCAAGGAAAAGACTGAAAATTTTGGATCCAAGGCAC 399 |||||||||||| || || ||||| || ||||||||||| ||||||||||| ||| | | Sbjct 188 TCCTCCCTTGTCTGTT-GACGAGGTTAAAGAAAAGACTGACAATTTTGGATCAAAGTCTC 246 Query 400 TGATTGGTGAAGGG-TCTTATGGGAGAGTATATTATGCGACACTAAATGATGGTG-TGGC 457 ||||||||| |||| |||||||| || ||||||||||| || ||||||||||| | || Sbjct 247 TGATTGGTG-AGGGATCTTATGGAAGGGTATATTATGCAACTCTAAATGATGG-GAAAGC 304 Query 458 GGTTGCTCTGAAGAAACTTGATGTCGCACCTGAAGCTGAAACAGATACCGAATTCTTGAG 517 || ||| |||||||||| ||||| || ||||||||||||||| || | || |||||||| Sbjct 305 AGTGGCTTTGAAGAAACTCGATGTTGCCCCTGAAGCTGAAACAAATTCTGAGTTCTTGAG 364 Query 518 TCAGGTTTCCATGGTCTCTAGGCTGAAGCATGAAAATCTCATTCAATTGCTTGGTTTTTG 577 ||||||||||||||| || || |||||||||| |||||||||||| || |||||| ||| Sbjct 365 TCAGGTTTCCATGGTTTCAAGATTGAAGCATGAGAATCTCATTCAACTGGTTGGTTATTG 424 Query 578 TGTTGATGGAAACCTCCGCGTCCTTGCATATGAGTTTGCAACAATGGGATCGTTGCATGA 637 |||||||| |||||| || || ||||| ||||||||||||||||||||||| |||| || Sbjct 425 TGTTGATGAAAACCTTCGTGTTCTTGCTTATGAGTTTGCAACAATGGGATCACTGCACGA 484 Query 638 CA-TCTTGCATGGTAGGAAGGGAGTTCAAGGAGCACAACCAGGTCCAACACTTGACTGGA 696 || || | ||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct 485 CATTC-TCCATGGTAGGAAGGGAGTTCAAGGTGCACAGCCTGGTCCAACACTTGACTGGT 543 Query 697 TAACGAGGGTGAAGATAGCGGTTGAGGCAGCTAGGGGTTTGGAATACCTCCATGAGAA-G 755 |||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||| | Sbjct 544 TAACAAGGGTGAAGATAGCAGTTGAGGCAGCTAGGGGTTTAGAATACCTTCATGAGAAGG 603 Query 756 TCTCAGCCTCCTGTAATCCATAGGGACATAAGATCTAGCAATGTCCTTCTTTTTGAAGAC 815 | |||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||| Sbjct 604 T-TCAGCCTCCTGTGATACATAGAGACATAAGATCTAGCAATGTGCTTCTTTTTGAAGAC 662 Query 816 TA-CAAAGC-AAAGATTGCTGATTTCAATCTCTCGAATCAAGCACCTGATAATGCTGCCC 873 || | |||| |||| ||||||||||||||||||| |||||||| |||||||||||||| | Sbjct 663 TATC-AAGCAAAAG-TTGCTGATTTCAATCTCTCAAATCAAGCTCCTGATAATGCTGCTC 720 Query 874 GTCTTCACTCAACAAGAGTCTTGGGGACTTTTGGTTATCATGCTCCAGAATATGCAATGA 933 |||||||||| |||||||||||||| || ||||| ||||| |||||||||||||| |||| Sbjct 721 GTCTTCACTCTACAAGAGTCTTGGGCACCTTTGGCTATCACGCTCCAGAATATGCTATGA 780 Query 934 CTGGACAGTTAACTCAGAAGAGTGATGTGTACAGCTTTGGTGTTGTACTTCTAGAACTTC 993 | |||||||| || ||||||||||| ||||| |||||||| ||||| |||||||| ||| Sbjct 781 CCGGACAGTTGACGCAGAAGAGTGACGTGTATAGCTTTGGGGTTGTTCTTCTAGAGCTT- 839 Query 994 TT-ACAGGGAGGAAACCGGTGGATCATACCATGCCTA-GAGGTCAACAGAGTCTTGTAAC 1051 || |||||||||||||| || ||||| || ||||| | | || ||||| ||||||||||| Sbjct 840 TTGACAGGGAGGAAACCTGTAGATCACACAATGCC-ACGTGGCCAACAAAGTCTTGTAAC 898 Query 1052 CTGGGCGACACCAAGACTCAGTGAAGATAAAGTGAAACAGTGCATTGATCCAAAGCTAAA 1111 |||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 899 CTGGGCTACACCAAGACTCAGTGAAGATAAAGTGAAGCAGTGTGTTGATCCAAAGCTAAA 958 Query 1112 AGCCGATTACCCTCCAAAAGCAGTTGCTAAGCTAGCAGCGGTGGCAGCATTGTGTGTGCA 1171 || || || ||||| ||| |||| |||||||||||||||||||||||||||||||| || Sbjct 959 AGGAGAATATCCTCCTAAATCAGTAGCTAAGCTAGCAGCGGTGGCAGCATTGTGTGTACA 1018 Query 1172 ATACGAAGCTGAGTTTAGACCAAATATGAGCATAGTTGTGAAGGCGCTACAGCCTCTCCT 1231 ||||||| ||||||||||||| || ||||| |||||||| || || | ||||| || || Sbjct 1019 ATACGAATCTGAGTTTAGACCCAACATGAGTATAGTTGTAAAAGCTTTGCAGCCACTTCT 1078 Query 1232 GAAACCTCCAGCAGCAGCTCCAGCACCAGAATCTTGA 1268 ||||| |||||| |||| |||| ||| ||||| ||| Sbjct 1079 CAAACCACCAGCACCAGCCCCAGTACCGGAATCCTGA 1115 > Ahg900854 jgi|Araly1|900854|Al_scaffold_0004_1504 Length=1068 Score = 944 bits (511), Expect = 0.0 Identities = 772/898 (86%), Gaps = 18/898 (2%) Strand=Plus/Plus Query 325 CTCTTCCCATCGAGGTCCCTCCCTTGTCT-TTGGATGAGGTCAAGGAAAAGACTGAAAAT 383 |||||||||| || || |||||||||||| || || ||||| || ||||||||||| ||| Sbjct 131 CTCTTCCCATTGAAGTTCCTCCCTTGTCTGTT-GACGAGGTTAAAGAAAAGACTGACAAT 189 Query 384 TTTGGATCCAAGGCACTGATTGGTGAAGGG-TCTTATGGGAGAGTATATTATGCGACACT 442 |||||||| ||| | |||||||||| |||| |||||||| || ||||| ||||| || || Sbjct 190 TTTGGATCAAAGTCTCTGATTGGTG-AGGGATCTTATGGAAGGGTATACTATGCAACTCT 248 Query 443 AAATGATGGTGTGGCGGTTGCTCTGAAGAAACTTGATGTCGCACCTGAAGCTGAAACAGA 502 ||||||||| || |||||| |||||||||| ||||| || ||||||| ||||||| | Sbjct 249 AAATGATGGAAAAGCAGTTGCTTTGAAGAAACTCGATGTTGCGCCTGAAGATGAAACAAA 308 Query 503 TACCGAATTCTTGAGTCAGGTTTCCATGGTCTCTAGGCTGAAGCATGAAAATCTCATTCA 562 |||| ||||| || |||||||||||||| || || || |||||||| ||||||||||| Sbjct 309 CGCCGAGTTCTTAAGCCAGGTTTCCATGGTATCAAGACTAAAGCATGAGAATCTCATTCA 368 Query 563 A-TTGCTTGGTTTTTGTGTTGATGGAAACCTCCGCGTCCTTGCATATGAGTTTGCAACAA 621 | | | |||||| ||||||||| | ||| || || || ||||| |||||||| ||||| | Sbjct 369 ACTAG-TTGGTTATTGTGTTGACGAAAAACTACGTGTTCTTGCTTATGAGTTGGCAACGA 427 Query 622 TGGGATCGTTGCATGACATCTTGCATGGTAGGAAGGGAGTTCAAGGAGCACAACCAGGTC 681 ||||||| ||||| ||||| || ||||||||||||||||||||||| ||||||||||||| Sbjct 428 TGGGATCATTGCACGACATTTTACATGGTAGGAAGGGAGTTCAAGGCGCACAACCAGGTC 487 Query 682 CAACACTTGACTGGATAACGAGGGTGAAGATAGCGGTTGAGGCAGCTAGGGGTTTGGAAT 741 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 488 CAACACTTGATTGGATAACGAGGGTGAAGATAGCGGTTGAGGCAGCTAGGGGTTTAGAAT 547 Query 742 ACCTCCATGAGAAG-TCTCAGCCTCCTGTAATCCATAGGGACATAAGATCTAGCAATGTC 800 |||| ||||||||| | ||| |||| |||||| |||||||||||||||||||||||||| Sbjct 548 ACCTTCATGAGAAGGT-TCAACCTCATGTAATACATAGGGACATAAGATCTAGCAATGTG 606 Query 801 CTTCTTTTTGAAGACTACAAAGCAAAGATTGCTGATTTCAATCTCTCGAATCAAGCACCT 860 ||||||||||||||||| |||||||| ||||||||||| ||||| || |||||||| ||| Sbjct 607 CTTCTTTTTGAAGACTATAAAGCAAAAATTGCTGATTTTAATCTTTCAAATCAAGCTCCT 666 Query 861 GATAATGCTGCCCGTCTTCACTCAACAAGAGTCTTGGGGACTTTTGGTTATCA-TGCTCC 919 ||||||||||| |||||||| || |||||| ||||||| || ||||||||||| | |||| Sbjct 667 GATAATGCTGCTCGTCTTCAATCTACAAGAATCTTGGGAACCTTTGGTTATCACT-CTCC 725 Query 920 AGAATATGCAATGACTGGACAGTTAACTCAGAAGAGTGATGTGTACAGCTTTGGTGTTGT 979 ||||||||| ||||||||| |||| || || |||||||| || || || |||||||| || Sbjct 726 AGAATATGCTATGACTGGAGAGTTGACACATAAGAGTGACGTATATAGTTTTGGTGTAGT 785 Query 980 ACTTCTAGAACTTCTT-ACAGGGA-GGAAACCGGTGGATCATACCATGCCTA-GAGGTCA 1036 ||||||||| || ||| || |||| ||||||| ||||||| ||| ||||| | | || || Sbjct 786 ACTTCTAGAGCT-CTTGAC-GGGAAGGAAACCTGTGGATCCTACAATGCC-ACGTGGCCA 842 Query 1037 ACAGAGTCTTGTAACCTGGGCGACACCAAGACTCAGTGAAGATAAAGT-GAAACAGTGCA 1095 ||| ||||||||||| ||||| ||||||| ||| ||||||||| |||| || ||||| Sbjct 843 ACAAAGTCTTGTAACTTGGGCTACACCAAAACTTAGTGAAGATGAAGTAGAG-CAGTGTG 901 Query 1096 TTGATCCAAAGCTAAAAGCCGATTACCCTCCAAAAGCAGTTGCTAAGCTAGCAGCGGTGG 1155 |||||||||||||||||| || || ||||| ||| |||| ||||||||||||||||||| Sbjct 902 TTGATCCAAAGCTAAAAGGAGAATATCCTCCTAAATCAGTAGCTAAGCTAGCAGCGGTGG 961 Query 1156 CAGCATTGTGTGTGCAATACGAAGCTGAGTTTAGACCAAATATGAGCATAGTTGTGAA 1213 ||||||||||||||||||| ||| |||||| ||||||||| ||||||| ||||||||| Sbjct 962 CAGCATTGTGTGTGCAATATGAATCTGAGTGTAGACCAAAAATGAGCACAGTTGTGAA 1019 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57478179705 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5