BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G06780.2 Length=2465 Score E Sequences producing significant alignments: (Bits) Value Ahg470701 jgi|Araly1|470701|fgenesh2_kg.1__655__AT1G06780.1 2745 0.0 > Ahg470701 jgi|Araly1|470701|fgenesh2_kg.1__655__AT1G06780.1 Length=2120 Score = 2745 bits (1486), Expect = 0.0 Identities = 1675/1763 (95%), Gaps = 26/1763 (1%) Strand=Plus/Plus Query 530 GTCGTAGAGAATTTATTGAAGAGTTATCCAAAATTAGATTCACGACAAATGACCTTAGAC 589 ||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 365 GTCGTAGGGAATTCATTGAAGAGTTATCCAAAATTAGATTCAAGACAAATGACCTTAGAC 424 Query 590 TTAGCGCTATTGAACATGAGGATGGAGAAGGCTTGAAGGGGCCAAGGCTCATTCTCTTCA 649 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 425 TTAGCGCTATTGAACATGAGGATGGAGAAGGCTTGAAGGGGCCAAGGCTCATGCTCTTCA 484 Query 650 AGGATGGGGAGTTTAA-T-TC--GT-C--------T-G-CTG---AAAGTGATGGTGGTA 691 |||||||||| ||||| | || || | | | ||| ||||||||||||||| Sbjct 485 AGGATGGGGACTTTAATTCTCTAGTACGGGATAATTCGTCTGATCAAAGTGATGGTGGTA 544 Query 692 ATACTTACAAAAACAGGGAAGAACAAGTGATTGTTTCACAGAAGATGACAGTTAGCTCTG 751 ||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 545 ATAATCACAAAAACAGGGAAGAACAAGTGATAGTTTCACAGAAGATGACAGTTAGCTCTG 604 Query 752 ATGAAAAGGGTCAAATTCTACCAACAGTCAACCAACTTGCTAATAAAACGGATTTCAAGC 811 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 605 ATGAAAAGGGTCAAATTCTACCAACAGTCAACCAACTTGCTAATAAAACGGATTTCAAGC 664 Query 812 CCCCTTTATCTAAGGGTGAAAAGAACACAAGGGTTCAGCCCGACAGAGCAACAGATGTGA 871 ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 665 CCCCTTTATCTAAGGGTGAAAAGAACACAAGGGTTCAGCCCAATAGAGCAACAGATGTGA 724 Query 872 AAACGAAGGAGATCAGAGACAAAATTATTCAAGCTAAAGCCTACCTGAATTTCGCTCCAC 931 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 725 AAATAAAGGAGATCAGAGACAAAATTATTCAAGCTAAAGCCTACCTGAATTTCGCTCTAC 784 Query 932 CTGGAAGTAACTCTCAAGTTGTGAAGGAGTTGAGAGGTCGG-CTGAAAGAGCTGGAACGG 990 | ||||||||||||||| |||||| ||| |||||||||||| | |||||||||||||||| Sbjct 785 CCGGAAGTAACTCTCAAATTGTGAGGGACTTGAGAGGTCGGAC-GAAAGAGCTGGAACGG 843 Query 991 TCTGTTGGTGATGCAACAAAGGACAAGGACTTATCAAAGGGCGCTCTCCGCAGGGTGAAG 1050 |||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 844 TCTGTTGGGGATGCAACAAAGGATAAGGACTTATCAAAGGGCGCTCTTCGCAGGGTGAAG 903 Query 1051 CCCATGGAAAATGTGTTATATAAGGCTAGTCGTGTCTTTAACAATTGCCCTGCCATCGCT 1110 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 904 CCCATGGAAAATGTGTTATACAAGGCTAGTCGTGTCTTTAACAATTGCCCTGCCATTGCT 963 Query 1111 ACCAAACTCCGTGCCATGAATTATAACACAGAAGAACAAGTTCAGGCGCAGAAAAATCAA 1170 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 964 ACCAAACTCCGTGCCATGAATTATAACACAGAAGAACAAGTTCAGGCGCAGAAAAATCAA 1023 Query 1171 GCAGCGTATCTAATGCAGCTTGCAGCAAGGACCACCCCAAAAGGGCTTCACTGTCTCTCA 1230 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1024 GCAGCATATCTAATGCAGCTTGCAGCAAGGACCACCCCAAAAGGGCTTCACTGTCTCTCA 1083 Query 1231 ATGCGGCTGACATCAGAATACTTTTCACTGGATCCTGAAAAAAGGCAGATGCCTAACCAG 1290 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1084 ATGCGGCTGACATCAGAATACTTCTCACTGGATCCTGAAAAAAGGCAGATGCCTAACCAG 1143 Query 1291 CAAAATTATTTTGACGCTAATTTCAATCATTATGTTGTCTTCTCTGACAATGTTTTGGCT 1350 |||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1144 CAAAATTATTATGACCCTAATTTCAACCATTATGTTGTCTTCTCTGACAATGTTTTGGCT 1203 Query 1351 TCTTCAGTCGTTGTTAACTCTACGATATCTTCATCAAAGGAGCCAGAAAGAATAGTCTTC 1410 |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 1204 TCTTCAGTTGTTGTTAACTCTACGATATCTTCTTCAAAGGAGCCGGAAAGAATAGTCTTC 1263 Query 1411 CATGTCGTGACTGATTCACTTAATTACCCAGCAATCTCAATGTGGTTTCTGCTAAACATT 1470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1264 CATGTCGTGACTGATTCACTTAATTACCCAGCAATCTCAATGTGGTTTCTGCTAAATATT 1323 Query 1471 CAAAGTAAAGCTACTATCCAAATCCTAAACATTGATGATATGGATGTCCTGCCTAGAGAT 1530 ||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||| || | Sbjct 1324 CAAAGTAGGGCTACCATCCAAATCCTCAACATTGATGATATGGATGTCCTACCTCCAGCT 1383 Query 1531 TATGATCAATTACTGATGAAGCAAAACTCTAATGACCCAAGATTCATTTCTACACTCAAT 1590 ||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 1384 TATGATCAATTGCTGATGAAGCAAAACTCTAATGACCCAAGATTCATTTCTCCCCTCAAT 1443 Query 1591 CACGCACGCTTCTATCTCCCGGATATATTCCCGGGTTTGAACAAGATGGTACTCTTGGAC 1650 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| Sbjct 1444 CACGCACGCTTCTATCTGCCGGATATATTCCCGGGTTTGAACAAGATCGTACTCTTTGAC 1503 Query 1651 CATGATGTAGTTGTTCAAAGAGATTTAAGTAGACTGTGGAGCATTGATATGAAAGGAAAG 1710 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1504 CATGATGTAGTAGTTCAAAGAGATTTAAGTAGACTGTGGAGTATTGATATGAAAGGAAAG 1563 Query 1711 GTGGTTGGAGCTGTAGAGACTTGTCTTGAAGGTGAATCTTCATTTCGATCAATGAGCACA 1770 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1564 GTGGTTGGAGCTGTAGAGACTTGTCTTGAAGGTGAATCTTCATTTCGATCAATGAGCACA 1623 Query 1771 TTTATTAATTTCTCAGACACATGGGTCGCTGGGAAATTTAGTCCTAGAGCTTGCACATGG 1830 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1624 TTTATTAATTTCTCAGACACATGGGTCGCTGGGAAATTTAGTCCTAGAGCTTGCACATGG 1683 Query 1831 GCTTTCGGGATGAATCTAATTGATCTCGAAGAATGGAGAATACGGAAGTTGACTTCTACA 1890 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1684 GCGTTCGGGATGAATCTAATTGATCTCGAAGAATGGAGAATACGGAAGTTGACTTCTACG 1743 Query 1891 TACATAAAATACTTCAACCTGGGAACAAAGAGACCATTGTGGAAAGCTGGGAGCTTACCA 1950 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1744 TACATAAAATACTTCAACCTGGGAACAAAGAGACCATTGTGGAAAGCTGGGAGCTTACCA 1803 Query 1951 ATAGGTTGGTTGACTTTCTATAGGCAAACATTAGCATTGGACAAGAGATGGCATGTGATG 2010 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1804 ATAGGTTGGTTGACTTTCTATAGGCAAACATTAGCATTGGACAAGAGATGGCATGTGATG 1863 Query 2011 GGGTTAGGTCGCGAATCAGGAGTCAAAGCGGTTGACATCGAACAAGCGGCAGTTATACAC 2070 ||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 1864 GGGCTAGGTCGCGAATCAGGAATCAAAGCGGTTGACATCGAACAAGCGGCGGTTATACAC 1923 Query 2071 TACGATGGGGTCATGAAGCCGTGGTTGGACATTGGAAAAGAGAATTACAAACGTTACTGG 2130 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1924 TACGATGGAGTTATGAAGCCGTGGTTGGACATTGGAAAAGAGAATTACAAACGTTACTGG 1983 Query 2131 AACATACACGTCCCTTACCATCACACCTACTTGCAACAGTGCAATCTTCAAGCTTGATAC 2190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1984 AACATACACGTCCCTTACCATCACACCTACTTGCAACAGTGCAATCTTCAAGCTTGATAC 2043 Query 2191 GaaaaaaaaaaaaaaaaaaTCTGGCAACTTAGGTTCAGTTTCAGATTCTTTTTGTTAAAC 2250 | |||||| ||| || | ||||||||||||||||| ||||| |||||||||||| Sbjct 2044 GGAAAAAAGCAAAT-----TCAGACAACTTAGGTTCAGTTT-AGATTATTTTTGTTAAAC 2097 Query 2251 AAGCTACTCAAGCATGATATCAA 2273 |||||||||||||||| |||||| Sbjct 2098 AAGCTACTCAAGCATGGTATCAA 2120 Score = 468 bits (253), Expect = 1e-130 Identities = 344/384 (90%), Gaps = 21/384 (5%) Strand=Plus/Plus Query 114 ATGAAGAAGCTCTGAATCTAAAACTCCTCTC-TCCGACCCCAAATCCAGAAATTCAAGCG 172 ||||||||||||||||||||||||| |||| |||||||||||| ||||||||| ||||| Sbjct 1 ATGAAGAAGCTCTGAATCTAAAACTTGTCTCTTCCGACCCCAAACCCAGAAATTGAAGCG 60 Query 173 AGGAATAGAATCTCCCACTAGAGAAAAGCAATCCCAGAAACCCTAAGTTCTTCA-CGTTT 231 | ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 61 AAGAATAGAATCTCCCACTAGAGGAAAGCAATCCCAGAAACCCTAAGTTCTTCATCGTTT 120 Query 232 CGTTCTTTTGCTTGTTGATCAAGCAGGATATCTCCGAGATTTGTGAGTCTCTTGCTACTT 291 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 121 CGTTCTTTTGCTTGTTGATCAAGCAGGAAATCTCCGAGATTTGTGAGTCTCTTGCTACTT 180 Query 292 CTTCCTGGAGAACGATTCAGGGTTTGATGTGATAAGAATAGT-CATCGAGGAAGATAGAT 350 ||||||||||||||| | | | | || | |||| | ||||||||||||||| Sbjct 181 CTTCCTGGAGAACGAG--A---T---A-G-GA-A----TAGTTC-TCGAGGAAGATAGAT 224 Query 351 TTGGG-GAtttttttttATTTGTAGATTCATGAAACAAATTCGTCGATGGCAGAGGATTT 409 | ||| || |||| ||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 225 TCGGGAGAGAATTTTCGATT-GTATATTCATGAAACAAATTCGTCGATGGCAGAGGATTT 283 Query 410 TGATCCTCGCTCTGCTATCGATATCTGTATTCGCTCCGCTTATTTTCGTATCGAATCGGC 469 |||||||| ||||||||||||||||||| |||||||| ||||||||||| |||||||||| Sbjct 284 TGATCCTCTCTCTGCTATCGATATCTGTCTTCGCTCCTCTTATTTTCGTCTCGAATCGGC 343 Query 470 TTAAGAGCATCACTCCCGTTGGTC 493 |||||||||||||||||||||||| Sbjct 344 TTAAGAGCATCACTCCCGTTGGTC 367 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92902107555 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5