BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06800.1
Length=1912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470702 jgi|Araly1|470702|fgenesh2_kg.1__656__AT1G06800.1 2512 0.0
Ahg481969 jgi|Araly1|481969|fgenesh2_kg.4__1029__AT2G30550.2 939 0.0
> Ahg470702 jgi|Araly1|470702|fgenesh2_kg.1__656__AT1G06800.1
Length=1660
Score = 2512 bits (1360), Expect = 0.0
Identities = 1535/1620 (95%), Gaps = 9/1620 (1%)
Strand=Plus/Plus
Query 183 tatattataAAAGAGTGCAATAAATTTGGTTACGACTTTGAAACTCATCGAGCTTTCAAC 242
||| ||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 41 TATTTTATACAAGAGTGCAATAAATTTCGTTACGACTTTGAAACTCATCAAGCTTTCAAC 100
Query 243 AATGGCGACCATTCCCTCCCAC-A-----ACCTTCG---TCCTCATACGACCAACCAAAG 293
||||||| |||||||||||||| | ||||||| |||||||| || |||||||||
Sbjct 101 AATGGCGGCCATTCCCTCCCACAACTTTCACCTTCGTCTTCCTCATATGATCAACCAAAG 160
Query 294 GACTCAGTACTCTCTTTCCTTCAGACCACACTTTTCACGCTCTACTCTGATCACTTTCCC 353
||||||||||||||||||| ||| |||||||||||||| ||||||||| |||||||| ||
Sbjct 161 GACTCAGTACTCTCTTTCCCTCAAACCACACTTTTCACACTCTACTCTTATCACTTTTCC 220
Query 354 GGCAAGATCATCGCCGGCGAGGGCTATGTCCAGAACCGACGAGGAGGCTTCAATATCTAC 413
| | ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 221 GACGAGAGCATCGCCGGCGAGGGCTATGTCCACAACCGACGAGGAGGCTTCAATATCTAC 280
Query 414 AAGGCTCGAGCAAGAAAGCTATGGGCTGACGACGGCAGAGGACATTCGCCGACGGGATGG 473
||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||| |
Sbjct 281 AAGGCTCGAGCCAGAAAGCTATGGGCTGACGACGGCGGAGGACATCCGCCGACGGGATAG 340
Query 474 AGAAGCAAAAGAATCCAAGAGGTTGAGAGACACGTGGCGGAAGATCCAAGGGGAAGATGA 533
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 AGAAGCTAAAGAATCCAAGAGGTTGAGAGACACGTGGCGGAAGATCCAAGGGGAAGATGA 400
Query 534 TTGGGCCGGGTTAATGGATCCGATGGACCCGGTTCTGAGATCTGAGCTGATCCGGTACGG 593
||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 401 TTGGGCCGGGTTAATGGATCCTATGGACCCGGTTCTGAGATCCGAACTGATCCGGTACGG 460
Query 594 AGAAATGGCCCAGGCCTGTTACGACGCCTTCGATTTCGATCCATTTTCAAGGTACTGCGG 653
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 461 AGAAATGGCCCAGGCCTGTTACGACGCCTTCGATTTCGATCCATTCTCAAGGTACTGTGG 520
Query 654 GAGCTGCAGATTCACGCGCCGTCACTTGTTCGATTCGCTCGGGATAATCGATTCTGGCTA 713
||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||
Sbjct 521 GAGCTGCAGATTCACGCGCCGTCACCTGTTCGATTCGCTCGGGATACTCGATTCCGGCTA 580
Query 714 TGAGGTGGCGCGTTATCTCTACGCGACGTCGAACATCAACCTTCCTAATTTCTTCTCCAA 773
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 581 CGAGGTGGCGCGTTATCTCTACGCGACGTCGAACATCAACCTCCCTAACTTCTTCTCGAA 640
Query 774 ATCGAGATGGTCCAAGGTGTGGAGCAAGAACGCCAATTGGATGGGTTACGTGGCTGTATC 833
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 641 ATCGAGATGGTCCAAGGTGTGGAGCAAGAACGCCAATTGGATGGGTTACGTGGCGGTTTC 700
Query 834 CGACGACAACGAAGCCACGCGCTGCCGTTTAGGACGCCGCGACATTGCCATCGCCTGGAG 893
||||||| ||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 701 CGACGACGACGAAGCCACGCGCTGCCGTTTAGGACGCCGCGACATCGCGATCGCATGGAG 760
Query 894 AGGGACTGTCACGCGGCTCGAGTGGATAGCTGATCTCAAGGATTTCCTCAAACCGGTATC 953
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 761 AGGGACCGTCACGCGGCTCGAGTGGATAGCGGATCTCAAGGATTTCCTCAAACCGGTATC 820
Query 954 CGGAAACGGATTCCGATGCCCCGACCCGGCCGTAAAAGCCGAATCCGGGTTTCTGGATCT 1013
||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 821 CGGAAACGGTTTCCGGTGCCCCGACCCGGCCGTTAAAGCCGAATCCGGGTTTCTGGATCT 880
Query 1014 ATACACGGACAAAGATACATCCTGCAATTTCTCCAAATTCTCGGCGCGAGAGCAGGTTCT 1073
|||||||||||||| || |||||||||||||| |||||||||||||| || || |||||
Sbjct 881 CTACACGGACAAAGACACGTCCTGCAATTTCTCAAAATTCTCGGCGCGTGAACAAGTTCT 940
Query 1074 TACGGAAGTGAAGCGGCTGGTGGAAAGGTACGGCGACGAGGAAGGAGAAGAACTGAGCAT 1133
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 941 GACGGAAGTGAAGCGGCTGGTGGAAAGGTACGGCGATGAGGAAGAAGAAGAACTGAGCAT 1000
Query 1134 CACCGTGACGGGACACAGTCTCGGCGGTGCGCTGGCGGTGCTAAGCGCGTACGACGTGGC 1193
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1001 CACCGTGACGGGACACAGTCTCGGCGGTGCGTTGGCGGTACTAAGCGCGTACGACGTGGC 1060
Query 1194 GGAGATGGGTGTGAACAGAACGAGGAAAGGAAAAGTGATTCCGGTGACGGCGTTCACGTA 1253
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1061 GGAGATGGGTCTGAACAGAACTAGGAAAGGAAAAGTGATTCCGGTGACGGCGTTCACGTA 1120
Query 1254 CGGAGGACCGCGAGTTGGGAACATTCGATTCAAGGAGAGGATTGAGAAATTGGGAGTGAA 1313
|||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1121 CGGAGGACCGCGCGTTGGGAACATACGATTCAAGGAGAGGATTGAGGAATTGGGAGTGAA 1180
Query 1314 GGTGTTGAGAGTGGTGAACGAGCACGACGTCGTGGCGAAATCGCCGGGACTGTTTCTGAA 1373
||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1181 GGTGTTGAGGGTGGTGAACGAGCACGACGTCGTGGCTAAGTCGCCGGGACTGTTTCTGAA 1240
Query 1374 CGAGCGTGCGCCACAGGCGCTAATGAAATTGGCGGGAGGATTGCCGTGGTGCTATAGCCA 1433
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 CGAGCGTGCACCACAGGCGCTAATGAAATTGGCGGGAGGATTGCCGTGGTGCTATAGCCA 1300
Query 1434 CGTGGGAGAAATGCTGCCGTTGGATCATCAGAAGTCTCCGTTCCTTAAGCCCACCGTTGA 1493
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1301 CGTGGGGGAAATGCTGCCGTTGGATCATCAGAAGTCGCCGTTCCTTAAGCCCACCGTTGA 1360
Query 1494 TCTTTCTACGGCTCATAACTTGGAAGCTCTCCTCCATCTCCTTGACGGGTATCATGGGAA 1553
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 TCTTTCAACTGCTCATAACTTGGAAGCTCTCCTCCATCTCCTTGACGGGTATCATGGGAA 1420
Query 1554 AGGACAGAGATTTGTGTTATCAAGTGGGAGAGATCCAGCGTTAGTGAACAAAGCATCTGA 1613
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 AGGGCAGAGATTTGTGTTATCAAGTGGGAGAGATCCAGCGTTAGTGAACAAAGCATCTGA 1480
Query 1614 TTTTTTGAAAGACCATTTCATGGTCCCTCCTTATTGGCGCCAAGACGCAAACAAAGGGAT 1673
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1481 TTTTTTGAAAGACCATTTCATGGTCCCTCCCTATTGGCGCCAAGACGCAAACAAAGGGAT 1540
Query 1674 GGTGAGGAACACTGACGGCCGTTGGATTCAACCTGATCGCATCCGTGCAGATGATCAACA 1733
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1541 GGTCAGGAACACTGACGGCCGTTGGATTCAACCAGATCGCATCCGTGCAGATGATCATCA 1600
Query 1734 TGCTCCTGACATACATCAACTCCTCACCCAACTCCATCATCCATCACAACTCTTGTAATT 1793
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1601 TGCTCCTGACATACATCAACTTCTCACCCAACTCCACCATCCATCACAACTCTTGTAATT 1660
> Ahg481969 jgi|Araly1|481969|fgenesh2_kg.4__1029__AT2G30550.2
Length=1642
Score = 939 bits (508), Expect = 0.0
Identities = 1063/1327 (80%), Gaps = 53/1327 (4%)
Strand=Plus/Plus
Query 444 GACGGCAGAGGACATTCGCCGACGGGATGGAGAAGCAAAAGAATCCA-AG-AGGTTGAGA 501
|||||| ||||| |||||||| || ||| | || | ||||| | || || | |||
Sbjct 284 GACGGCGGAGGATATTCGCCGGCGTGATAAAAAAACCGAAGAA--GAGAGAAGACTAAGA 341
Query 502 GACACGTGGCGGAAGATCCAAGGGGAAGATGATTGGGCCGGGTTAATGGATCCGATGGAC 561
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 342 GACACGTGGCGTAAGATCCAAGGAGAAGACGATTGGGCCGGGTTAATGGATCCAATGGAT 401
Query 562 CCGGTTCTGAGATCTGAGCTGATCCGGTACGGAGAAATGGCCCAGGCCTGTTACGACGCC 621
|| |||| ||||| ||||| ||||| ||||| |||||||| || || |||||||||||
Sbjct 402 CCAATTCTTAGATCGGAGCTAATCCGTTACGGCGAAATGGCTCAAGCTTGTTACGACGCT 461
Query 622 TTCGATTTCGATCCATTTTC-AAGGTACTGCGGGAGCTGC-AGATTCACGCGCCGTC-AC 678
|||||||||||||| ||| || |||||||| | || | |||||| |||| | || |
Sbjct 462 TTCGATTTCGATCCCGCTTCGAA-ATACTGCGGCACCT-CAAGATTCTCGCGGC-TCGAG 518
Query 679 TTGTTCGATTCGCTCGGGATAATCGATTCTGGCTATGAGGTGGCGCGTTATCTCTACGCG 738
|| |||||||| ||||| || |||||||| || || |||||||||||||| |||||||||
Sbjct 519 TTCTTCGATTCTCTCGGAATGATCGATTCCGGTTACGAGGTGGCGCGTTACCTCTACGCG 578
Query 739 ACGTCGAACATCAACCTTCCTAATTTCTTCTCCAAATCGAGATGGTCCAAGGTGTGGAGC 798
|||||||| ||||| || || || |||||||| |||||| | ||||| || || ||||||
Sbjct 579 ACGTCGAATATCAATCTCCCGAACTTCTTCTCGAAATCGCGGTGGTCTAAAGTTTGGAGC 638
Query 799 AAGAACGCCAATTGGATGGGTTACGTGGCTGTATCCGACGACAACGAAGCCACGCGCT-G 857
|| ||||| ||||||||||| ||||| ||||| ||||||| ||||| | | || |
Sbjct 639 AAAAACGCTAATTGGATGGGATACGTCGCTGTCTCCGACG---ACGAAACGTCTCG-TAA 694
Query 858 CCGTTTAGGACGCCGCGACATTGCCATCGCCTGGAGAGGGACTGTCACGCGGCTCGAGTG 917
||| | || ||||| || || || || || |||||||| || |||||| || |||||
Sbjct 695 CCGCCTCGGCCGCCGTGATATCGCGATTGCGTGGAGAGGAACCGTCACGAAACTAGAGTG 754
Query 918 GATAGCTGATCTCAAGGATT-TCCTCAAACCGGTATCCGGAAACGGAT-TCCGATGCCCC 975
||| || ||||| ||||||| | | ||||| |||||||| || || |||| ||||||
Sbjct 755 GATCGCGGATCTAAAGGATTAT-TTAAAACCAGTATCCGGTAA-TAATATCCGGTGCCCC 812
Query 976 GACCCGGCCGTAAAAGCCGAATCCGGGTTTC-TGGATCTATACACGGACAAAGATACATC 1034
||||||||||| |||| ||||||| || ||| ||||||| ||||| |||||||| | | |
Sbjct 813 GACCCGGCCGTTAAAGTCGAATCC-GGATTCTTGGATCTCTACACAGACAAAGACAAAAC 871
Query 1035 CTGCAATTTCTCCAAATTCTCGGCGCGAGAGCAGGTTCTT-ACGGAAGTGAAGCGGCTGG 1093
|||||| ||| | |||||||||||||| |||||| || || ||||| |||||||| ||||
Sbjct 872 CTGCAAATTCGCAAAATTCTCGGCGCGTGAGCAGATT-TTAACGGAGGTGAAGCGTCTGG 930
Query 1094 TGGAAAGGTACGGCGACGAGGAAGGA-GAAGAACTGAGCATCACCGTGACGGGACACAGT 1152
|||||| |||||||| || | | || || | ||||||||||||||||||||||||
Sbjct 931 TGGAAATATACGGCGATGACG-ATGACTCCGATTTAAGCATCACCGTGACGGGACACAGT 989
Query 1153 CTCGGCGGTGCGCTGGCGGTGCTAAGCGCGTACGACGTGGCGGAGATGGG-TGTGAA-CA 1210
|||||||| ||| | ||| || ||||||||||||| | ||||||||||| | |||| |
Sbjct 990 CTCGGCGGCGCGTTAGCGATGTTAAGCGCGTACGATATAGCGGAGATGGGAT-TGAATCG 1048
Query 1211 GAACGAGGAAAGGAAAAGTGATTCCGGTGACGGCGTTCACGTACGGAGGACCGCGAGTTG 1270
|| || || || ||||||||||||||||||| ||| || |||||||||||| |||| |
Sbjct 1049 GAGTAAG-AACGGGAAAGTGATTCCGGTGACGGTGTTGACTTACGGAGGACCGAGAGTGG 1107
Query 1271 GGAACATTC-GATTCAAGGAGAGGATTGAGAAA-TTGGGAGTGAAGGTGTTGAGAGTGGT 1328
||||| | | || ||||| ||||| ||| | |||| |||||||||| ||||||||||
Sbjct 1108 GGAACGTGAAGTTT-AAGGATAGGATGGAGGAGCTTGG-AGTGAAGGTGCTGAGAGTGGT 1165
Query 1329 GAACGAGCACGACGTCGTGGCGAAATCGCCGGGACTGTTTCTGAACGAGCGTGCG-CCAC 1387
||| | ||||||||||| | || ||||||||| ||||| |||||||| || || || |
Sbjct 1166 GAATGTTCACGACGTCGTTCCTAAGTCGCCGGGATTGTTTTTGAACGAGAGT-CGGCCTC 1224
Query 1388 AGGCGCTAATGAA-ATTGGCGGGAGGATT-GCCGTGGTGCTATAGCCACGTGGGAGAA-A 1444
| ||||| ||||| || | ||| ||| || ||||||||| |||||||||||||| || |
Sbjct 1225 ACGCGCTGATGAAGATCG-CGG-AGGGTTTGCCGTGGTGTTATAGCCACGTGGGGGAGGA 1282
Query 1445 TGCTGCCGTTGGATCATCAGAAGTCTCCGTTCCTTAAGCCCACCGTTGATCTTTCTACGG 1504
|||| ||||||||||||| || || ||||| ||||| || ||||||||||||||||
Sbjct 1283 -GCTGGCGTTGGATCATCAAAACTCGCCGTTTCTTAAACCTTCCGTTGATCTTTCTACTT 1341
Query 1505 CTCATAA-CTTGGAAGCTCTCCTCCATCTCCTTGACGGGTATCATGGGAAAGGACAGAGA 1563
| ||||| |||| ||||| | || ||||| ||||||||||||||||| |||||| |||||
Sbjct 1342 CCCATAATCTTG-AAGCTATGCTTCATCTTCTTGACGGGTATCATGGAAAAGGAGAGAGA 1400
Query 1564 TTTGTGTTATCAAGTGGGAGAGATCCA-GCGTTAGTGAACAAAGCATCTGATTTTTTGAA 1622
|||||| | || ||||||||||| ||| ||| ||||||||||||| || || ||||||||
Sbjct 1401 TTTGTGCTGTCGAGTGGGAGAGA-CCATGCGCTAGTGAACAAAGCGTCGGACTTTTTGAA 1459
Query 1623 AGACCATTT-CATGGTCCCTCC-TTATTGGCGCCAAGACGCAAACAAAGGGATGGTGAGG 1680
||| || || || ||| || || |||||| |||||||| |||||||| ||||| ||
Sbjct 1460 AGAGCACTTACAAATTCCA-CCGTT-TTGGCGTCAAGACGCGAACAAAGGAATGGTTCGG 1517
Query 1681 AACACTGACGGCCGTTGGATTCAA-CCTGATCG-CATCCGTGCAGATGATCAACATGCTC 1738
|| | ||| || |||||||||||| || || || | ||||| | || ||||| ||| |||
Sbjct 1518 AATAGTGAAGGTCGTTGGATTCAAGCC-GAGCGAC-TCCGTTCTGAGGATCATCATTCTC 1575
Query 1739 CTGACAT 1745
|||||||
Sbjct 1576 CTGACAT 1582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71838202070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5