BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G06980.1 Length=791 Score E Sequences producing significant alignments: (Bits) Value Ahg470720 jgi|Araly1|470720|fgenesh2_kg.1__674__AT1G06980.1 987 0.0 > Ahg470720 jgi|Araly1|470720|fgenesh2_kg.1__674__AT1G06980.1 Length=655 Score = 987 bits (534), Expect = 0.0 Identities = 632/675 (94%), Gaps = 23/675 (3%) Strand=Plus/Plus Query 1 ATAAATCTGATAATCAATATATATCAAATACTCAAAACA-AAAGAGAAAGAAATTA-AAG 58 ||||||||||||||| | || |||||||||||| | |||||||||| | | || Sbjct 1 ATAAATCTGATAATC-----A-AT-AAATACTCAAAAAATAAAGAGAAAG-CA-GAGGAG 51 Query 59 AGAGAGATGGGAAACAGCCTAAGGTGTTGTCTGGCTTGTGTTCTTCCATGTGGAGCACTA 118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 52 AGAGAGATGGGAAACAGCCTAAGGTGTTGTCTGGCTTGTGTTCTTCCATGTGGAGCACTA 111 Query 119 GATTTGATCAGGATCGTTCATCTAAACGGCTACGTTGAGGAGATCACACGGTCAATAACC 178 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 112 GATTTGATCAGGATCGTTCATCTAAACGGCTACGTTGAGGAGATCACACGGTCAATAACT 171 Query 179 GCCGGAGAGATCCTCCAAGCAAACCCTAACCATGTCCTAAGCAAACCATGTTCTCAAGGA 238 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 172 GCCGGAGAGATCCTCCAAGCAAACCCAAACCATGTCCTAAGCAAACCATGTTCTCAAGGA 231 Query 239 GTTGTCCGCAAAATCTTGATCTTGTCTCCTGAATCCGAGCTCAAACGAGGAAGCATCTAT 298 |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| Sbjct 232 GTTGTCCGCAAAATCTTGATCTTGTCCCCTGAATCTGAGCTCAAGCGAGGAAGCATCTAT 291 Query 299 TTTCTCATCCCCGATTCTTCCTTGCCGGAGAAGAAAAGGCGGAGAAAGGACACTCCTCGC 358 ||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 292 TTTCTCATCCCTGATTCTTCCTTGCCGGAGAAGAAAAGGAGGAGAAAGGACGCTCCTCGC 351 Query 359 CGGAAGAAGAATCTCCAA-AACCCTAGTGCCGACGCCGCCGGCCGAGAAATTAAAGGTGA 417 ||||| |||| |||| || |||||||||||||||||| |||| |||| |||||||||| Sbjct 352 CGGAAAAAGACTCTC-AACAACCCTAGTGCCGACGCCACCGG---AGAAGTTAAAGGTGA 407 Query 418 TGAGGAATGTGTGAAGTTGTGTGAGAAGTACTTAGAAGAAGTAGTGTCGTCGGCGTCGAC 477 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 408 TGATGAATGTGTGAAGTTGTGTGAGAAGTACTTAGAAGAAGTTGTGTCGTCGGCGTCGAC 467 Query 478 AGGTAAAGAGCACCGTCATCGCCGGCGGCACAGCAGATCGGCGTCAGTATCCACGTGGCG 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 468 AGGTAAAGAGCACCGTCATCGCCGGCGGCACAGCAGATCGGCGTCAGTATCCACGTGGCG 527 Query 538 ACCTCTCCTTGACAGTATCTCTGAGGATCTTAATTAATTCCTCTTTCCTTTAAATCTCtt 597 |||||||||||||||||||||||||||||||||||||||||||| |||||| | | || Sbjct 528 GCCTCTCCTTGACAGTATCTCTGAGGATCTTAATTAATTCCTCTTCCCTTTA--T-T-TT 583 Query 598 ttttttttGTTGCTTCTAGCTAATGGTGttttttgtccggaagccggatttttatcattc 657 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 584 TTTTT---GTTGCTTCTAGCTAATGGTGTTTTTTGTCCGGAAGCCGGATTTTTATCATTC 640 Query 658 tctttttcatttttt 672 ||||||||||||||| Sbjct 641 TCTTTTTCATTTTTT 655 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29202154422 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5