BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07000.1
Length=2024
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470722 jgi|Araly1|470722|fgenesh2_kg.1__676__AT1G07000.1 3049 0.0
> Ahg470722 jgi|Araly1|470722|fgenesh2_kg.1__676__AT1G07000.1
Length=1995
Score = 3049 bits (1651), Expect = 0.0
Identities = 1887/2001 (94%), Gaps = 16/2001 (1%)
Strand=Plus/Plus
Query 14 CAATCATATGGCTGAAGCCGGTGACGAGAATCTTTACGCCGCCGCCAGAGACATCGCCAG 73
||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 1 CAATCATATGGCTGAAGCCGGTGACGAGAATCTATACGCCGCGGCCAGAGACATAGCCAG 60
Query 74 AGCTCTCGGCAAGGATCCAAGTGCCGCCGGAGATATCTTACAGATTCTCTCCGGTTATGG 133
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 AGCTCTCGGCAAGGATCCAAGTGCTGCCGGAGATATCTTACAGATTCTCTCCGGTTATGG 120
Query 134 CGCTTCCGGAAACCGCGGCGGAGATCCTCGACCCACCCCATCCCGCGGCGGCTCAAACGT 193
|||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||
Sbjct 121 TGCTTCCGGAAACCGCGGCGGCGATCCTCGACCCACCGCATCCCGCGGCGGTTCAAACGT 180
Query 194 CAACTTTGACCGAGCCCTCACCTCTTTAGAGAGACAGATCTCCAGCTACATCGTGGAAGA 253
|||| ||||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 181 CAACCTTGACCGAGCCCTCAATTCCTTAGAGAGACAGATCTCCAGCTACATCGTGGAGGA 240
Query 254 TCGACCGATCTGGTCTGATCCCGTTGACTCGCGCACCTTCCTCGACTCTGTTGATGAGCT 313
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCGGCCGATCTGGTCCGATCCCGTTGACTCGCGCACCTTCCTCGACTCTGTTGATGAGCT 300
Query 314 AC-TTGCGATTGCCGGAGACTTGAGATCCATGGCCGGAGATAAATCCGTCGCCGTCTGTC 372
| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 -CATTTCGATTGCCGGAGACTTGAGATCCATGGCCGGAGATAAATCCGTCGTCGTCTGTC 359
Query 373 AATCCCGTGCCGATGAGCTGATTCAACAGGTGATGTTTAGGCTTCAAGAAGAGTTTGGAT 432
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 360 AATCCCGTGCCGATGAGCTGATTCAACAGGTGATGTTTAGGCTTCAAGAAGAGTTTGGGT 419
Query 433 TTGTAATGGACCGAGCCCCTGACTCGTTTGACTCGGACGATGAGTTCCCCGGCGAAGAAG 492
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 420 TTGTAATGGACCGAGCCCCTGACTCGTTTGACTCGGACGATGAGTTCTCCGGCGAAGAAG 479
Query 493 ACAACGACACAAGCGACGGGGTAATCGTTGCTCGTCCAATCACTGATTACAAAATCGTGA 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACAACGACACAAGCGACGGGGTAATCGTTGCTCGTCCAATCACTGATTACAAAATCGTGA 539
Query 553 TCGAGGCGTTACAATCTAGCGTTATTGGCGATCTAAACGCGATCGCTGTGCGCATGGTCG 612
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 540 TCGAGGCGTTACAATCTAGCGTTATTGGCGATCTAAACGCGATCGCTGTGAGGATGGTTG 599
Query 613 CTGGTGGATTTGCAAAAGAGTGTTCAAGAGTGTACAGCAGTCGACGAAGAGAGTTTCTAG 672
||||||||| |||||||||||||||||||| |||||||||| ||||||| ||||||||||
Sbjct 600 CTGGTGGATATGCAAAAGAGTGTTCAAGAGCGTACAGCAGTAGACGAAGGGAGTTTCTAG 659
Query 673 AGGAGAGTTTGTCGAGGTTACATCTCAGAGGACTAAGTATGGAGGAAGTGCAAGAGAGTC 732
||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||| ||
Sbjct 660 AGGAGAGTTTGTCGAGGTTGCATCTCAGAGGATTAAGTATGGAGGAAGTTCAAGAGACTC 719
Query 733 CATGGCAAGATCTTGAAGACGAAATCGACCGTTGGATTAAAGCCGTAACGCTGATATTCC 792
| ||||||||||||||||||||||||||||||||||| ||||||||||| ||| | ||||
Sbjct 720 CTTGGCAAGATCTTGAAGACGAAATCGACCGTTGGATCAAAGCCGTAACTCTGGTGTTCC 779
Query 793 ACGTTTTCTTCCCGAGCGAGCGTCTTCTCTGCGATCGCGTTTTCTCTGATCTTCCTGTTT 852
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GCGTTTTCTTCCCAAGCGAGCGTCTTCTCTGCGATCGCGTTTTCTCTGATCTTCCTGTTT 839
Query 853 CCTCTGTAACCGATCTTTCTTTCATGGAAGTTTGTCGCGGAACCACAACACAGCTTCTGA 912
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 840 CCTCTGTAACCGATCTTTCTTTCATGGAAGTTTGTCGAGGAACCACCACACAGCTTCTGA 899
Query 913 ATTTCGCAGACGCGATCGCTTTAGGAAGCCGTTTACCTGAACGTTTGTTTAAGGTTGTGG 972
||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 900 ATTTCGCCGACGCGATCGCTTTAGGGAGCCGTTTGCCGGAACGTTTGTTTAAGGTTGTGG 959
Query 973 ATTTATACGAAGCGATGCAAGACCTTATTCCTAAGATGGAAACGCTATTTTCTGATCGAT 1032
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 960 ATTTATACGAAGCGATGCAAGACCTAATTCCTAAGATGGAAACGCTATTCTCTGATCGAT 1019
Query 1033 ATTGTTCGCCGCTAAGGCATGAGGCGCTCGCGATTCATAAACGGTTAGGAGAAGCGATTA 1092
|||||| ||||||||||||||||||| | |||||| ||||||||||||| ||||||||||
Sbjct 1020 ATTGTTTGCCGCTAAGGCATGAGGCGGTTGCGATTTATAAACGGTTAGGGGAAGCGATTA 1079
Query 1093 GAGGGATATTTATGGAGCTGGAGAATTTAATCCGACGTGACCCTCCCAAAACAGCGTTTC 1152
||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 1080 GAGGGATATTTATGGAGTTGGAGAACTTAATCCGTCGTGACCCTCCCAAAACAGCATTTC 1139
Query 1153 CTGGCGGTGGGATTCACCCGATCACGCGGTACGTGATGAATTATCTGCGTGCGGCGTGTA 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CTGGCGGTGGGATTCACCCGATCACGCGGTACGTGATGAATTATCTGCGTGCGGCGTGTA 1199
Query 1213 AATCGCGGCAATCGTTGGAGCAGATACTTGACCAGACAGGAAATGAAACCGGATCAGATA 1272
||||||||||||| ||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 1200 AATCGCGGCAATCATTGGAGCAGATTCTTGACCAGACTGGGAATGAAACCGGATCAGATA 1259
Query 1273 CGAGACCGTTGTCTGTGCAAATCATATGGGTTTTGGAGTTGTTGGAGAGTAACTTGGAAG 1332
| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1260 CTAGACCTTTGTCTGTGCAAATCGTATGGGTTTTGGAGTTGTTGGAGAGTAACTTGGAAG 1319
Query 1333 GCAAGAAAAGAACTTATCGTGATCCGTCTTTGTGTTTCTTGTTCATGATGAACAATGACA 1392
|||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct 1320 GCAAGAAAAGAACTTACCGCGATCCGTCTTTGTGCTTCTTGTTCATGATGAACAATGACA 1379
Query 1393 AGTATATTCTTGATAAGGCTAAGGATAACGAGCTAGGTTTAGTCCTAGGAGAAGATTGGA 1452
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AGTATATTCTTGATAAGGCCAAGGATAACGAGCTAGGTTTAGTCCTAGGAGAAGATTGGA 1439
Query 1453 TTGTGAAGCACGCAGCGAAACTGAGGCAATACCATTCTAATTACCGAAGGAGCTCATGGA 1512
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TTGTGAAACACGCAGCGAAACTGAGGCAATACCATTCTAATTACCGAAGGAGCTCATGGA 1499
Query 1513 ACCAAGTGGTGGGATTGCTTAGGACCGATGGTCCGTATCCCAAGTTAGTAGAGAACCTAA 1572
|||||||||||||||||||||| || || |||||||||||||||||| |||||||||| |
Sbjct 1500 ACCAAGTGGTGGGATTGCTTAGAACAGAGGGTCCGTATCCCAAGTTAATAGAGAACCTTA 1559
Query 1573 GATTGTTCAAATCACAGTTCGATGAGGTGTGTAAGG-TGCAATCTCAATGGGTTGTTAGT 1631
|| |||||||| | ||||||||||||||||||||| | ||||||||||||||||||| |
Sbjct 1560 GACTGTTCAAAGCCCAGTTCGATGAGGTGTGTAAGACT-CAATCTCAATGGGTTGTTACT 1618
Query 1632 GATGGGCAATTGAGGGAGGAGTTAAGAAGCTCTGTTGCCGGAATTGTATCTCCGGCGTAC 1691
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1619 GATGGGCAGTTGAGGGAGGAGTTAAGAAGCTCTGTTGCCGGAATTGTGTCTCCGGCGTAC 1678
Query 1692 TCGAATTTCATCAGAAGATTGAAGGAGTCACCGGAGATTAATGGGAGGCGTGGAGAGCCG 1751
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1679 TCGAATTTCATCAGAAGATTGAAGGAGTCGCCGGAGATTAATGGGAGGCGTGGAGAGCCG 1738
Query 1752 TTTATTCCGTATACTGTTGAAGATGTGGAGTTTATAATCAAACGGTTGTTCAAGGAAAGC 1811
|||||||||||||||||||||||||||||||||| ||| ||| || ||||||||||||||
Sbjct 1739 TTTATTCCGTATACTGTTGAAGATGTGGAGTTTAGAATTAAAGGGCTGTTCAAGGAAAGC 1798
Query 1812 TCAAGTTGATTAAATTAGATATGAAAAGAAATTAAAAAATTCTTATT---AATTGAAttt 1868
||||| ||||||||||| ||||||||||||||||||| ||| | ||| ||| ||| ||
Sbjct 1799 TCAAGATGATTAAATTAAATATGAAAAGAAATTAAAAGATTATAATTGTTAATCGAAATT 1858
Query 1869 ttttGTAAAATTGTGAATCATTCTGTGtttttttATCTTTCTTGGGTGAATAATGTTCAT 1928
|||||||||||||||||||||||||| ||||||| | || ||||||||| ||||||||||
Sbjct 1859 TTTTGTAAAATTGTGAATCATTCTGT-TTTTTTT-T-TT-CTTGGGTGAGTAATGTTCAT 1914
Query 1929 GGATCGGTGGAATCACCTTTTCGACATTGATTTGTT--C-A-TGT-ATTGCTTTTTTGAT 1983
|||| ||||||||||||||||||| ||||||||| | | | | |||||| |||||||
Sbjct 1915 GGATGGGTGGAATCACCTTTTCGATGTTGATTTGTCAGCTACTTTTATTGCTCTTTTGAT 1974
Query 1984 GTAAGAAATTTCCTTAAGGTT 2004
||||||||||||||| |||||
Sbjct 1975 GTAAGAAATTTCCTTGAGGTT 1995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76104309510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5