BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07010.3
Length=1542
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470724 jgi|Araly1|470724|fgenesh2_kg.1__678__AT1G07010.1 2139 0.0
> Ahg470724 jgi|Araly1|470724|fgenesh2_kg.1__678__AT1G07010.1
Length=1534
Score = 2139 bits (1158), Expect = 0.0
Identities = 1431/1553 (92%), Gaps = 57/1553 (4%)
Strand=Plus/Plus
Query 8 ACAAATGTTAAGTGATTTCATCAAAGCTCTGGTGGATCATTGCTTCTCCACCACCAATA- 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ACAAATGTTAAGTGATTTCATCAAAGCTCTGGTGGATCATTGCTTCTCCACCACCAACAC 60
Query 67 C---CAATGGCTTCCCTTTACCTCAATTCCTTACTTCCACTTCCTCCTTCTCACCCCCAG 123
| |||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CAATCAATGGCTTCTCTATACCTCAATTCCTTACTTCCACTTCCTCCTTCTCATCCCCAG 120
Query 124 AAACTTTTAGAA----C--CTTC-T-T-CTTCCTCTTTGTTGAGCACTTCTAATGGTAAC 174
|||||| ||||| | |||| | | |||||||||||||||||||||| |||||||||
Sbjct 121 AAACTTATAGAACCTTCTTCTTCTTCTCCTTCCTCTTTGTTGAGCACTTCCAATGGTAAC 180
Query 175 GAACTTGCTCTGAAGCCGATTGTCATCAATGGAGATCCACCCACTTTCGTCTCTGCTCCT 234
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 GAAGTTGCTCTGAAGCCGATTGTCATCAATGGAGACCCACCCACTTTCGTCTCTGCTCCT 240
Query 235 GCTCGTCGTATCGTTGCAGGTTTTGGTTTTGGATATGCACTCACAGTTGGAGACCTTCAT 294
||||||||||||||||||| || || | | | || || | || || | | |
Sbjct 241 GCTCGTCGTATCGTTGCAG-TT--GGA---G-A----C-CTT-CA-T-GGCGA--T-C-T 281
Query 295 GGCGATCTGGGTAAAGCCAGAGACGCACTTCAGTTGGCTGGCGTCTTGAGCTCCGACGGA 354
|| | | ||||||||||||||||||||| |||| |||||||||||||| ||||||
Sbjct 282 GG-G-T------AAAGCCAGAGACGCACTTCAGATGGCCGGCGTCTTGAGCTCTGACGGA 333
Query 355 CGAGACCAGTGGTATCTG-CTAGAGTTCAACAT-TACGCATCTTGAGGTAGGAGATATAC 412
|||||||||||| || || | | || | | | ||| | || |||||||||||||||
Sbjct 334 CGAGACCAGTGG-AT-TGGCCA-AGA-CT-C-TGTACT-AG-TTCAGGTAGGAGATATAC 385
Query 413 TTGATCGCGGTGATGATGAAATCGCAATACTCTCCTTATTGAGGTCACTTGATGATCAGG 472
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||
Sbjct 386 TTGATCGCGGTGATGATGAAATTGCAATACTCTCTTTATTGAGGTCACTTGATGGTCAGG 445
Query 473 CCAAGGCTAATGGTGGAGCTGTTTTCCAGGTTAATGGGAACCACGAGACAATGAATGTTG 532
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 446 CCAAGGCTAATGGTGGAGCTGTTTTCCAGGTTAATGGGAACCACGAGACGATGAATGTGG 505
Query 533 AAGGGGATTTCAGATATGTAGATGCGAGAGCATTTGATGAGTGTACTGATTTTCTTGACT 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 AAGGGGATTTCAGATATGTAGATGCGAGAGCATTTGATGAGTGTACTGATTTTCTTGACT 565
Query 593 ACTTGGAGGACTATGCACAAGACTGGGACAAAGCGTTTAGGAATTGGATTTTTGAGTCAA 652
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 566 ACTTGGAGGACTATGCACAAGACTGGGACAAAGCGTTTACTAATTGGATTTTTGAGTCAA 625
Query 653 GACAATGGAAAGAAGATAGGAGGAGTTCTCAAACCTATTGGGATCAATGGAATGTAGTAA 712
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 626 GACAATGGAAAGAAGATAGAAGGAATTCTCAAACCTATTGGGATCAATGGAATGTAGTAA 685
Query 713 AGAGGCAAAAGGGAGTAATTGCAAGGTCGGTCCTTCTCAGACCAGGTGGTCGTTTAGCAT 772
|||||||||||||||| |||||||||||| ||||| |||||||||||||||| |||||||
Sbjct 686 AGAGGCAAAAGGGAGTGATTGCAAGGTCGATCCTTTTCAGACCAGGTGGTCGATTAGCAT 745
Query 773 GTGAATTGTCGCGTCACGGAGTTATTCTCCGTGTTAATAACTGGCTCTTCTGCCACGGTG 832
|||||||| ||||||||||||||||||| ||||||||||||||| | |||||||||||||
Sbjct 746 GTGAATTGGCGCGTCACGGAGTTATTCTGCGTGTTAATAACTGGATTTTCTGCCACGGTG 805
Query 833 GTCTCCTTCCTCACCATGTTGCATACGGCATAGAGAGGATAAACAGAGAAGTCTCTACTT 892
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 806 GTCTCCTTCCTCACCATGTTGCATACGGGGTAGAGAGGATAAACAGAGAAGTCTCTACTT 865
Query 893 GGATGAGAAGCCCTACTAACTATGAAGACAGTCCTCAGATGCCGTTCATTGCGACTCGAG 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 866 GGATGAGAAGCCCTACTAACTATGAAGACAGTCCTCAGATGCCGTTCATTGCGACTCGAG 925
Query 953 GATATGACAGTGTAGTCTGGAGCCGACTTTACTCAAGAGAGACTTCTGAGCTTGAGGACT 1012
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 926 GATATGACAGTGTAGTCTGGAGCCGCCTTTACTCAAGAGAGACTTCTGAGCTGGAGGACT 985
Query 1013 ATCAAATTGAACAGGTAAATAAAATTCTTCACGACACTCTTGAAGCTGTAGGTGCCAAAG 1072
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 986 ATCAAATTGAACAGGTAAATAAAATTCTTCACGACACTCTTGAAGCTGTCGGTGCCAAGG 1045
Query 1073 CGATGGTGGTCGGGCATACTCCCCAGTTATCAGGGGTTAACTGTGAATATGGTTGCGGCA 1132
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1046 CGATGGTGGTCGGGCATACTCCCCAGTTATCAGGGGTTAACTGTGAGTATGGTTGCGGCA 1105
Query 1133 TATGGAGAGTTGATGTAGGAATGTCCAGTGGTGTTCTTGACTCTAGACCAGAGGTTCTGG 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 TATGGAGAGTTGATGTAGGAATGTCCAGTGGTGTTCTTGACTCTAGACCAGAGGTTCTGG 1165
Query 1193 AGATAAGAGGGGACAAAGCTAGAGTAATAAGGAGCAACCGTGACAGACTTCATGAACTTC 1252
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1166 AGATAAGAGGGGACAAAGCTAGAGTTATAAGGAGCAACCGTGACAGACTTCATGAACTTC 1225
Query 1253 AGGTTGCAGATTACATTTaaaaaaaaGAACCAGACTCTCATGTTCAAGATTCAAACTTTA 1312
| |||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1226 AAGTTGCAGATTACATCTGAAAAAAAGAACCAGACTCTCATGTTCAAGATCCAAACTTTA 1285
Query 1313 TCACCGTATTTGTCATCAT-ACACATAATAAAGCATCAGAAGGTTTCAGTCTTTCAGACA 1371
|| || ||||| ||| ||| | ||| ||||||||||||||||||||||||||||||||||
Sbjct 1286 TCGCCATATTTCTCACCATGA-ACAAAATAAAGCATCAGAAGGTTTCAGTCTTTCAGACA 1344
Query 1372 AGGTCCAGATGCAGTTGAGCGAGGCCATACTTTGAACTCTATGTA----CGTATCTATGT 1427
|| |||||||| |||||| |||| |||||||||||||||||||| |||||||||||
Sbjct 1345 AGATCCAGATGTAGTTGAATGAGGGCATACTTTGAACTCTATGTATGTACGTATCTATGT 1404
Query 1428 ATATATGTGTGTGAATCATCAGATACAACATACTATACTCATCAAGTAAAGGTTTTGTAT 1487
|||||||| |||||||||||||| ||||||||||| | |||||||||||||| ||||||
Sbjct 1405 ATATATGTATGTGAATCATCAGAAACAACATACTAAATTCATCAAGTAAAGGCCTTGTAT 1464
Query 1488 AGCAAAAACACTGGTTAGTGTTACTTAAAGAGTGGTGAAATTCTCTGGTTTTT 1540
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1465 AGCAAAA-CACTGGTTAGTGTTACTTAAAGAGTGGTGAAATTCTCTGGTTTTT 1516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57744811420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5