BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G07030.1 Length=1477 Score E Sequences producing significant alignments: (Bits) Value Ahg470726 jgi|Araly1|470726|fgenesh2_kg.1__680__AT1G07030.1 2167 0.0 > Ahg470726 jgi|Araly1|470726|fgenesh2_kg.1__680__AT1G07030.1 Length=1435 Score = 2167 bits (1173), Expect = 0.0 Identities = 1367/1458 (94%), Gaps = 23/1458 (2%) Strand=Plus/Plus Query 6 TCCACCTGAAATAAAAATTGTGGAAGAAAGATCAAATCTTTGACGACATCAAGGAGGAGG 65 |||||||||||||||||||||||||||||||||||| |||||| |||| |||||| || Sbjct 1 TCCACCTGAAATAAAAATTGTGGAAGAAAGATCAAACCTTTGATGACAGCAAGGA-GA-- 57 Query 66 ATTTGGTAAGCTACAGATAAAAACAAAAGCTATGATATGAGATAATGTAGTCCACCACCA 125 | ||||||| ||| |||||||||||||| ||||| || ||||||||||||| || |||| Sbjct 58 AGTTGGTAACCTAGAGATAAAAACAAAA-CTATGTTAGGAGATAATGTAGT-CA--ACCA 113 Query 126 CACCAAATTCCCCCTTCACCGTCTCTCTTCGTCGGTGATTCACATTCCGATTTGGTGTCT 185 || ||||||||||| ||||||||||||||||||||||||| ||||||||| || || | Sbjct 114 CATCAAATTCCCCCATCACCGTCTCTCTTCGTCGGTGATTAACATTCCGA-TT--TG-C- 168 Query 186 TTTTTACTCTTAACAAGTCCTCAAAAACCCTACTTTTACTCGAGATTTTGTCTCCGCCGC 245 | | | | | | |||||||||||||||||||||||| |||||||||| ||||||| Sbjct 169 ----T-C-C--ACCCATTCCTCAAAAACCCTACTTTTACTCAAGATTTTGTCCCCGCCGC 220 Query 246 CGAGTACCAAGTGCCTCCCGATCTACGCCCCAATCCCTAAATGGCTACGGAGGCTACAAC 305 ||||| || ||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct 221 CGAGTGCCTAGTGCCTCCCGATCTACTCCCCAATCCCTAGATGGCTACGGAGGCTACAAC 280 Query 306 CGTACCCAAATTCCAGGAACCTGATCTCCGGCAGGTTTCTCAGACACCGGATTTCAAACC 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 281 CGTACCCAAATTCCAGGAACCTGATCTCCGGCAGGTTTCTCAGACACCGGATTTCAAACC 340 Query 366 GGAAATCGCTCACGATGGTCTTAAGTTCTGGCAATTTATGATTGCTGGTTCGATTGCTGG 425 |||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 341 GGAAATCGCTCATGACGGTCTTAAGTTCTGGCAATTCATGATTGCTGGTTCGATTGCTGG 400 Query 426 CTCCGTCGAACACATGGCGATGTTTCCCGTCGATACCATCAAGACCCATATGCAAGCGCT 485 ||||||||||||||||||||||||||| || |||||| | ||||||||||||||||| || Sbjct 401 CTCCGTCGAACACATGGCGATGTTTCCTGTTGATACCGTGAAGACCCATATGCAAGCACT 460 Query 486 TCGACCATGTCCCTTAAAACCCGTCGGAATCCGGGAAGCTTTCCGTTCGATTATCCAAAA 545 |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 461 TCGACCATGTCCGTTAAAACCCGTCGGAATCCGGCAAGCTTTCCGTTCGATTATCCAAAA 520 Query 546 GGAAGGACCTTCAGCTCTGTATCGCGGGATCTGGGCTATGGGTCTCGGCGCTGGACCTGC 605 |||||||||||||||| ||||||| ||||| ||||||||||||||||| ||||||||||| Sbjct 521 GGAAGGACCTTCAGCTTTGTATCGAGGGATTTGGGCTATGGGTCTCGGAGCTGGACCTGC 580 Query 606 TCACGCCGTTTACTTCTCATTCTATGAAGTATCGAAGAAGTATTTATCCGCCGGGGATCA 665 |||||||||||||||||| || || || ||||||||||||||||||||||||||| |||| Sbjct 581 TCACGCCGTTTACTTCTCCTTTTACGAGGTATCGAAGAAGTATTTATCCGCCGGGAATCA 640 Query 666 GAACAATTCCGTCGCGCATGCGATGTCCGGCGTATTCGCTACTATATCAAGCGATGCTGT 725 |||||||||||||||||||||| | || || ||||||||||||||||||||||||||||| Sbjct 641 GAACAATTCCGTCGCGCATGCGGTCTCAGGTGTATTCGCTACTATATCAAGCGATGCTGT 700 Query 726 TTTCACTCCCATGGATATGGTGAAGCAGAGGTTGCAGATGGGTGAAGGGACTTATAAAGG 785 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 701 TTTTACTCCCATGGATATGGTGAAGCAGAGGTTGCAGATGGGTGAAGGGACTTATAAAGG 760 Query 786 AGTCTGGGATTGTGTTAAGAGGGTTTTGCGTGAGGAAGGGATTGGTGCGTTTTATGCTTC 845 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 761 GGTTTGGGATTGTGTTAAGAGGGTTTTGCGTGAGGAAGGGATTGGTGCGTTTTATGCTTC 820 Query 846 TTATAGGACGACGGTTCTGATGAACGCGCCGTTTACGGCTGTTCACTTTGCCACTTACGA 905 |||||||||||||||||||||||||||||| |||||||||||||| ||||| || || || Sbjct 821 TTATAGGACGACGGTTCTGATGAACGCGCCTTTTACGGCTGTTCATTTTGCGACGTATGA 880 Query 906 GGCTGCTAAGAAGGGATTGATGGAGTTTTCGCCGGATAGAATTAGTGATGAGGAAGGTTG 965 |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 881 GGCTGCTAAGAAGGGATTGATGGAGTTTTCGCCGGAAAGAGTTAGTGATGAGGAAGGTTG 940 Query 966 GTTGGTTCACGCTACCGCTGGAGCTGCTGCTGGTGGATTGGCAGCTGCTGTGACTACGCC 1025 ||||||||| || || |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 941 GTTGGTTCATGCCACTGCTGGAGCTGCTGCTGGTGGATTGGCAGCTGCTGTGACGACGCC 1000 Query 1026 GCTTGATGTTGTCAAGACGCAGTTGCAATGTCAGGGTGTGTGTGGATGTGACCGCTTCAC 1085 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1001 GCTTGATGTTGTCAAGACGCAGTTGCAATGTCAGGGTGTGTGTGGATGCGACCGCTTCAC 1060 Query 1086 TAGTAGTTCTATTAGCCATGTACTTAGAACGATAGTGAAAAAAGATGGATACAGAGGACT 1145 |||| |||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1061 TAGTGGTTCGATTAGTCATGTACTGAGAACGATAGTGAAAAAAGATGGATACAGAGGACT 1120 Query 1146 TCTAAGGGGATGGCTCCCGAGAATGCTCTTCCATGCTCCTGCAGCAGCAATCTGTTGGTC 1205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1121 TCTAAGGGGATGGCTCCCGAGAATGCTCTTCCATGCTCCTGCAGCAGCAATCTGTTGGTC 1180 Query 1206 CACTTATGAAGGAGTTAAATCTTTCTTTCAAGACTTCAATGTCGATTCAAACACTGCCTG 1265 |||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 1181 CACTTATGAAGGGGTTAAATCTTTCTTTCAAGACTTCAATGGCGATTCAAGCACTGCCTG 1240 Query 1266 aaaaaaaGACAAAAGGGTTAGGCTATTTCACACTCTTGAGGATCCTGCTTTTCTTATTTG 1325 |||||| |||||| || |||||||||| |||||||||||||||||||||||||||||||| Sbjct 1241 AAAAAA-GACAAATGG-TTAGGCTATT-CACACTCTTGAGGATCCTGCTTTTCTTATTTG 1297 Query 1326 TTTGTAACATAGTTTTCTCAGGTTTTCTATGAAGTCATTTTTAGATTATATATTTTCCAG 1385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1298 TTTGTAACATAGTTTTCTCAGGTTTTCTATGAAGTCATTTTTAGATTATATATTTTCCAG 1357 Query 1386 GTTTGTGTTGATGATAATGTCGTCGAGAAATTTTGATTAGAGTTGTACAAAACTATGTTC 1445 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1358 GTTTGTGTTGATGATGCTGTCGTCGAGAAATTTTGATTAGAGTTGTACAAAACTATGTTC 1417 Query 1446 CTTCCAAATTTCTAATAA 1463 |||||||||||||||||| Sbjct 1418 CTTCCAAATTTCTAATAA 1435 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55268945495 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5