BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G07080.1

Length=1218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg470730 jgi|Araly1|470730|fgenesh2_kg.1__684__AT1G07080.1         1378    0.0  


> Ahg470730 jgi|Araly1|470730|fgenesh2_kg.1__684__AT1G07080.1
Length=1090

 Score = 1378 bits (746),  Expect = 0.0
 Identities = 885/950 (93%), Gaps = 17/950 (2%)
 Strand=Plus/Plus

Query  41   TTTGAAGAAGAAGAAGGCGACGACACAAAAACCTTGCATTTGCATCCATGGCGTCGATGC  100
            |||||||||||||||||||||||||| || |||||||||||| |||||||||||||||  
Sbjct  1    TTTGAAGAAGAAGAAGGCGACGACAC-AACACCTTGCATTTGTATCCATGGCGTCGATAA  59

Query  101  CGAGCAAACTTCTTCCAGTCCTAGTCTGCTACGTTTTTCTTTTCCCC--T--TT-G----  151
            ||||||||||| ||| |||||||||||||||||||||||||||||||  |  || |    
Sbjct  60   CGAGCAAACTTTTTCTAGTCCTAGTCTGCTACGTTTTTCTTTTCCCCTTTGCTTCGTTCT  119

Query  152  CATCATCATCTGATTATTCTGGGGTATCTCTTCCATCTTCGTCGCCTAAAGTCTCGGTGG  211
            |||| ||| |||||| ||||||||||||||||||||| |||||||| |||||||||||||
Sbjct  120  CATCGTCAGCTGATTTTTCTGGGGTATCTCTTCCATCCTCGTCGCCGAAAGTCTCGGTGG  179

Query  212  GCCTGTACTACGAGTCTCTCTGTCCCTACTGCTCTTCCTTCATTGTTAACCACCTCGCGA  271
            ||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| |||
Sbjct  180  GCCTGTACTACGAGTCTCTCTGTCCGTACTGCTCCTCCTTCATAGTTAACCACCTCACGA  239

Query  272  AGCTCTTCGAAGACGATCTCATATCAATCGTCGATCTCCATCTCTCTCCGTGGGGCAATA  331
            | ||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct  240  AACTCTTTGAAGACGATCTAATATCGATCGTCGATCTCCATCTGTCTCCGTGGGGCAATA  299

Query  332  CCAAGCTCCGTTCCGATAACGTCACTGCCGTTTGCCAGCATGGGGCATTTGAATGCTTCT  391
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  CCAAGCTCCGTCCCGATAACGTCACTGCCGTTTGCCAGCATGGGGCATTTGAATGCTTCT  359

Query  392  TGGATACCGTAGAAGCTTGTGCAATTGATGCTTGGCCTAAAGTAAGCGATCATTTCCCGT  451
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  360  TGGATACCGTAGAAGCTTGTGCAATTGATGCTTGGCCTAAAGTGAGCGATCATTTCCCGT  419

Query  452  TCATATACTGTGTCGAGAAGTTGGTGACTGAACATAAGTATGACAAGTGGGAGACGTGTT  511
            |||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct  420  TCATATACTGTGTCGAGAAGTTGGTGACTGAACACAAGTACGATAAGTGGGAGACGTGTT  479

Query  512  ATGAGAAGCTCAATCTCAACTCGAAACCTGTTGCAGATTGTCTCAGCAGTGGACATGGGA  571
            |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct  480  ATGAGAAGCTCAATCTCAACTCGAAACCTGTTGCCGATTGTCTCAGCACTGGACATGGGA  539

Query  572  ATGAGCTTGCTTTGCACTATGCTGCAGAAACGAATGCGCTTCAGCCTCCTCA-CAAGTAT  630
            ||||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||| 
Sbjct  540  ATGAGCTTGCTTTGCACTATGCTGCAGAAACAAATGCTCTTCAGCCTCCTCATCA-GTAC  598

Query  631  GTGCCCTGGGTAGTCGTGGATGGTCAGCCACTTTATGAGGACTATGAAAACTTCATAAGC  690
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  599  GTGCCCTGGGTAGTCGTAGATGGTCAGCCACTTTATGAGGACTATGAAAACTTCATAAGC  658

Query  691  TACATCTGCAAGGCTTACAAAGGTAATAAAGTACCTGGCGCATGTACCAAATATGCAACC  750
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  659  TACATCTGCAAGGCTTACAAAGGTAATAAAGTACCTGGCGCATGTGCCAAATATGCAACC  718

Query  751  GGCAACTTCATTCGTAGTGTCAAATTGAAACGCTCCCCTCTGGT--GTCCTGGAAAGGCG  808
            ||| ||||||||||||||||||||||||||||||||||||||||  | || ||||||| |
Sbjct  719  GGCGACTTCATTCGTAGTGTCAAATTGAAACGCTCCCCTCTGGTAAG-CC-GGAAAGGAG  776

Query  809  TGAATAAGATGTGGGATGTGTTGGAACGTATCACAACCTCTTTATCGTCATACATCGACA  868
            | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct  777  TCAATAAGATGTGGGATGTGTTGGAACGTATCAAAACCTCTTTATCGTCATACATCGAAA  836

Query  869  TCACCGGCCTGCTATGAACACTTCCTGTATCTTTTTCCCATGTAACAAACCACCCCAAAA  928
            ||||| ||||||||||||||||||||||||||||| || ||||||||||| |||| ||||
Sbjct  837  TCACCCGCCTGCTATGAACACTTCCTGTATCTTTTACCTATGTAACAAAC-ACCCTAAAA  895

Query  929  AGCTATCTAGATTCTGATATTTAATGAATGTGTGTAATCTTTATGTTTCA  978
            ||||||||||||||||| || | |||||| ||| |||||| ||||| |||
Sbjct  896  AGCTATCTAGATTCTGAAATGTGATGAATATGTATAATCTATATGTATCA  945



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45480639981


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5