BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07080.1
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470730 jgi|Araly1|470730|fgenesh2_kg.1__684__AT1G07080.1 1378 0.0
> Ahg470730 jgi|Araly1|470730|fgenesh2_kg.1__684__AT1G07080.1
Length=1090
Score = 1378 bits (746), Expect = 0.0
Identities = 885/950 (93%), Gaps = 17/950 (2%)
Strand=Plus/Plus
Query 41 TTTGAAGAAGAAGAAGGCGACGACACAAAAACCTTGCATTTGCATCCATGGCGTCGATGC 100
|||||||||||||||||||||||||| || |||||||||||| |||||||||||||||
Sbjct 1 TTTGAAGAAGAAGAAGGCGACGACAC-AACACCTTGCATTTGTATCCATGGCGTCGATAA 59
Query 101 CGAGCAAACTTCTTCCAGTCCTAGTCTGCTACGTTTTTCTTTTCCCC--T--TT-G---- 151
||||||||||| ||| ||||||||||||||||||||||||||||||| | || |
Sbjct 60 CGAGCAAACTTTTTCTAGTCCTAGTCTGCTACGTTTTTCTTTTCCCCTTTGCTTCGTTCT 119
Query 152 CATCATCATCTGATTATTCTGGGGTATCTCTTCCATCTTCGTCGCCTAAAGTCTCGGTGG 211
|||| ||| |||||| ||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 120 CATCGTCAGCTGATTTTTCTGGGGTATCTCTTCCATCCTCGTCGCCGAAAGTCTCGGTGG 179
Query 212 GCCTGTACTACGAGTCTCTCTGTCCCTACTGCTCTTCCTTCATTGTTAACCACCTCGCGA 271
||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| |||
Sbjct 180 GCCTGTACTACGAGTCTCTCTGTCCGTACTGCTCCTCCTTCATAGTTAACCACCTCACGA 239
Query 272 AGCTCTTCGAAGACGATCTCATATCAATCGTCGATCTCCATCTCTCTCCGTGGGGCAATA 331
| ||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 240 AACTCTTTGAAGACGATCTAATATCGATCGTCGATCTCCATCTGTCTCCGTGGGGCAATA 299
Query 332 CCAAGCTCCGTTCCGATAACGTCACTGCCGTTTGCCAGCATGGGGCATTTGAATGCTTCT 391
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCAAGCTCCGTCCCGATAACGTCACTGCCGTTTGCCAGCATGGGGCATTTGAATGCTTCT 359
Query 392 TGGATACCGTAGAAGCTTGTGCAATTGATGCTTGGCCTAAAGTAAGCGATCATTTCCCGT 451
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 360 TGGATACCGTAGAAGCTTGTGCAATTGATGCTTGGCCTAAAGTGAGCGATCATTTCCCGT 419
Query 452 TCATATACTGTGTCGAGAAGTTGGTGACTGAACATAAGTATGACAAGTGGGAGACGTGTT 511
|||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 420 TCATATACTGTGTCGAGAAGTTGGTGACTGAACACAAGTACGATAAGTGGGAGACGTGTT 479
Query 512 ATGAGAAGCTCAATCTCAACTCGAAACCTGTTGCAGATTGTCTCAGCAGTGGACATGGGA 571
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 480 ATGAGAAGCTCAATCTCAACTCGAAACCTGTTGCCGATTGTCTCAGCACTGGACATGGGA 539
Query 572 ATGAGCTTGCTTTGCACTATGCTGCAGAAACGAATGCGCTTCAGCCTCCTCA-CAAGTAT 630
||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||
Sbjct 540 ATGAGCTTGCTTTGCACTATGCTGCAGAAACAAATGCTCTTCAGCCTCCTCATCA-GTAC 598
Query 631 GTGCCCTGGGTAGTCGTGGATGGTCAGCCACTTTATGAGGACTATGAAAACTTCATAAGC 690
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GTGCCCTGGGTAGTCGTAGATGGTCAGCCACTTTATGAGGACTATGAAAACTTCATAAGC 658
Query 691 TACATCTGCAAGGCTTACAAAGGTAATAAAGTACCTGGCGCATGTACCAAATATGCAACC 750
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 659 TACATCTGCAAGGCTTACAAAGGTAATAAAGTACCTGGCGCATGTGCCAAATATGCAACC 718
Query 751 GGCAACTTCATTCGTAGTGTCAAATTGAAACGCTCCCCTCTGGT--GTCCTGGAAAGGCG 808
||| |||||||||||||||||||||||||||||||||||||||| | || ||||||| |
Sbjct 719 GGCGACTTCATTCGTAGTGTCAAATTGAAACGCTCCCCTCTGGTAAG-CC-GGAAAGGAG 776
Query 809 TGAATAAGATGTGGGATGTGTTGGAACGTATCACAACCTCTTTATCGTCATACATCGACA 868
| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 777 TCAATAAGATGTGGGATGTGTTGGAACGTATCAAAACCTCTTTATCGTCATACATCGAAA 836
Query 869 TCACCGGCCTGCTATGAACACTTCCTGTATCTTTTTCCCATGTAACAAACCACCCCAAAA 928
||||| ||||||||||||||||||||||||||||| || ||||||||||| |||| ||||
Sbjct 837 TCACCCGCCTGCTATGAACACTTCCTGTATCTTTTACCTATGTAACAAAC-ACCCTAAAA 895
Query 929 AGCTATCTAGATTCTGATATTTAATGAATGTGTGTAATCTTTATGTTTCA 978
||||||||||||||||| || | |||||| ||| |||||| ||||| |||
Sbjct 896 AGCTATCTAGATTCTGAAATGTGATGAATATGTATAATCTATATGTATCA 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45480639981
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5