BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G07090.1

Length=943
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919431 jgi|Araly1|919431|scaffold_100712.1                       1009    0.0  


> Ahg919431 jgi|Araly1|919431|scaffold_100712.1
Length=638

 Score = 1009 bits (546),  Expect = 0.0
 Identities = 608/637 (95%), Gaps = 8/637 (1%)
 Strand=Plus/Plus

Query  82   ccaaaaaaaCCCTAGTTCTGAATGGAATCGGCGGATTCC-GG-----ACGATCCGATCCG  135
            ||||||||||||||||| ||||||||||||||||||||| ||     |||||||||||||
Sbjct  1    CCAAAAAAACCCTAGTTTTGAATGGAATCGGCGGATTCCGGGTCACAACGATCCGATCCG  60

Query  136  GTAAAAGGAGACGACCCGGGTCCATCTTTCGTCTCTTCACCACCAGCTACACCTAGCAGG  195
            ||||||||||||||| |||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct  61   GTAAAAGGAGACGACACGGGTCCATCTTTCGTCTCTTCGCCACCGGCTACACCAAGCAGG  120

Query  196  TATGAGTCACAGAAGCGACGCGACTGGAACACGTTCTTGCAGTACCTCAAGAACCACAAG  255
            |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct  121  TATGAGTCACAGAAGCGACGTGACTGGAACACTTTCTTGCAGTACCTCAAGAACCACAAG  180

Query  256  CCGCCTCTCGCGTTGTCACGGTGTAGCGGAGCGCATGTGATCGAGTTTCTCAAGTACCTC  315
            |||||||||||||||||||| |||||||||||||| |||||||| || ||||||||||||
Sbjct  181  CCGCCTCTCGCGTTGTCACGTTGTAGCGGAGCGCACGTGATCGAATTCCTCAAGTACCTC  240

Query  316  GACCAGTTCGGTAAGACCAAAGTCCACGTGGCGGCTTGTCCTTACTTCGGCCATCAGCAA  375
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GACCAGTTCGGCAAGACCAAAGTCCACGTGGCGGCTTGTCCTTACTTCGGCCATCAGCAA  300

Query  376  CCTCCGTCTCCTTGCTCATGCCCTCTCAAGCAAGCTTGGGGATCTCTCGATGCTTTGATC  435
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  301  CCTCCGTCTCCTTGCTCATGCCCTCTCAAGCAAGCTTGGGGATCTCTCGACGCTTTGATC  360

Query  436  GGACGGTTGAGAGCTGCCTACGAGGAGAACGGTGGACGGCCGGATTCTAACCCGTTCGCC  495
            ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct  361  GGACGGTTGAGAGCTGCCTACGAGGAGAACGGTGGACGGCCTGATTCAAACCCGTTCGCC  420

Query  496  GCACGTGCGGTTC-GGATTTACTTGAGGGAAGTCAGAGAGAGTCAGGCAAAGGCTCGTGG  554
            ||||||||||| | |||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct  421  GCACGTGCGGT-CAGGATTTACTTAAGGGAAGTCAGAGAGAGTCAGGCCAAGGCTCGAGG  479

Query  555  GATTCCTTACGAGAAAAAGAAACGGAAACGGCCGCCAACTGTCACCACCGTTAGAGTTGA  614
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  480  GATTCCTTACGAGAAAAAGAAACGGAAACGGCCACCAACTGTCACCACCGTTAGAGTTGA  539

Query  615  CGTCGCTTCTTCGAGACAAAGTGACGGAGACCCTTGTAACGTCGGTGCTCCATCTGTTGC  674
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  540  CGTCGCTTCTTCGAGACAAAGTGACGGAGACGCTTGTAACGTCGGTGCTCCATCTGTTGC  599

Query  675  CGAGGCCGTACCGCCTTAGATCGAAttatatataata  711
            ||||||||||||||||||||||||||||||||| |||
Sbjct  600  CGAGGCCGTACCGCCTTAGATCGAATTATATATTATA  636



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34996837806


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5