BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G07090.1 Length=943 Score E Sequences producing significant alignments: (Bits) Value Ahg919431 jgi|Araly1|919431|scaffold_100712.1 1009 0.0 > Ahg919431 jgi|Araly1|919431|scaffold_100712.1 Length=638 Score = 1009 bits (546), Expect = 0.0 Identities = 608/637 (95%), Gaps = 8/637 (1%) Strand=Plus/Plus Query 82 ccaaaaaaaCCCTAGTTCTGAATGGAATCGGCGGATTCC-GG-----ACGATCCGATCCG 135 ||||||||||||||||| ||||||||||||||||||||| || ||||||||||||| Sbjct 1 CCAAAAAAACCCTAGTTTTGAATGGAATCGGCGGATTCCGGGTCACAACGATCCGATCCG 60 Query 136 GTAAAAGGAGACGACCCGGGTCCATCTTTCGTCTCTTCACCACCAGCTACACCTAGCAGG 195 ||||||||||||||| |||||||||||||||||||||| ||||| |||||||| |||||| Sbjct 61 GTAAAAGGAGACGACACGGGTCCATCTTTCGTCTCTTCGCCACCGGCTACACCAAGCAGG 120 Query 196 TATGAGTCACAGAAGCGACGCGACTGGAACACGTTCTTGCAGTACCTCAAGAACCACAAG 255 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 121 TATGAGTCACAGAAGCGACGTGACTGGAACACTTTCTTGCAGTACCTCAAGAACCACAAG 180 Query 256 CCGCCTCTCGCGTTGTCACGGTGTAGCGGAGCGCATGTGATCGAGTTTCTCAAGTACCTC 315 |||||||||||||||||||| |||||||||||||| |||||||| || |||||||||||| Sbjct 181 CCGCCTCTCGCGTTGTCACGTTGTAGCGGAGCGCACGTGATCGAATTCCTCAAGTACCTC 240 Query 316 GACCAGTTCGGTAAGACCAAAGTCCACGTGGCGGCTTGTCCTTACTTCGGCCATCAGCAA 375 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GACCAGTTCGGCAAGACCAAAGTCCACGTGGCGGCTTGTCCTTACTTCGGCCATCAGCAA 300 Query 376 CCTCCGTCTCCTTGCTCATGCCCTCTCAAGCAAGCTTGGGGATCTCTCGATGCTTTGATC 435 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 301 CCTCCGTCTCCTTGCTCATGCCCTCTCAAGCAAGCTTGGGGATCTCTCGACGCTTTGATC 360 Query 436 GGACGGTTGAGAGCTGCCTACGAGGAGAACGGTGGACGGCCGGATTCTAACCCGTTCGCC 495 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 361 GGACGGTTGAGAGCTGCCTACGAGGAGAACGGTGGACGGCCTGATTCAAACCCGTTCGCC 420 Query 496 GCACGTGCGGTTC-GGATTTACTTGAGGGAAGTCAGAGAGAGTCAGGCAAAGGCTCGTGG 554 ||||||||||| | |||||||||| ||||||||||||||||||||||| |||||||| || Sbjct 421 GCACGTGCGGT-CAGGATTTACTTAAGGGAAGTCAGAGAGAGTCAGGCCAAGGCTCGAGG 479 Query 555 GATTCCTTACGAGAAAAAGAAACGGAAACGGCCGCCAACTGTCACCACCGTTAGAGTTGA 614 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 480 GATTCCTTACGAGAAAAAGAAACGGAAACGGCCACCAACTGTCACCACCGTTAGAGTTGA 539 Query 615 CGTCGCTTCTTCGAGACAAAGTGACGGAGACCCTTGTAACGTCGGTGCTCCATCTGTTGC 674 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 540 CGTCGCTTCTTCGAGACAAAGTGACGGAGACGCTTGTAACGTCGGTGCTCCATCTGTTGC 599 Query 675 CGAGGCCGTACCGCCTTAGATCGAAttatatataata 711 ||||||||||||||||||||||||||||||||| ||| Sbjct 600 CGAGGCCGTACCGCCTTAGATCGAATTATATATTATA 636 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34996837806 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5