BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G07150.1

Length=1518
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg334013 jgi|Araly1|334013|fgenesh1_pg.C_scaffold_1000578          1801    0.0   
  Ahg344762 jgi|Araly1|344762|fgenesh1_pg.C_scaffold_4001104           453    2e-126


> Ahg334013 jgi|Araly1|334013|fgenesh1_pg.C_scaffold_1000578
Length=2118

 Score = 1801 bits (975),  Expect = 0.0
 Identities = 1267/1401 (90%), Gaps = 48/1401 (3%)
 Strand=Plus/Plus

Query  19    ATGGAGAAACAGAGCATCAGAAACACTTGTTCTTCTTCTTTAATGTTATCCTCACCATCT  78
             |||||||||||||| |||||||||| |||||||||||| ||  | || |  |   |||||
Sbjct  1     ATGGAGAAACAGAGTATCAGAAACATTTGTTCTTCTTC-TTCTTCTT-TAAT-GTCATCT  57

Query  79    TCTTTTTGGGTTCGTGGTGCGTGTATCGGCAGAGGTTGTTTCGGTGCAGTTAGTACGGCG  138
             |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  58    TCTTCTTGGGTTCGTGGTGCGTGTATCGGAAGAGGTTGTTTCGGTGCAGTTAGTACGGCG  117

Query  139   ATCAGCAAAACCAACGGTGAAGTTTTCGCCGTGAAATCCGTGGATCTCGCCACGAGTCTC  198
             |||||||||||||||||||||||||| ||||||||||||||||||||| ||||  |||||
Sbjct  118   ATCAGCAAAACCAACGGTGAAGTTTTTGCCGTGAAATCCGTGGATCTCACCACTTGTCTC  177

Query  199   CCCACTCAATCAGAGTCTCTCGAGAACGAAATATCTGTCTTCCGCTCGCTAAAGCCTCAC  258
             ||||| |||||||||||||||||||||||||| |||||| || | ||||| |||||||||
Sbjct  178   CCCACCCAATCAGAGTCTCTCGAGAACGAAATCTCTGTCCTCTGTTCGCTCAAGCCTCAC  237

Query  259   CCTTACATCGTGAAGTTTCTCGGCGACGGAGTCTCGAAAGAAGGAACGACGACGTTTAGG  318
             ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  238   CCTCACATCGTGAAGTTTCTCGGCGACGGAGTCTCGAAAGAAGGAACGACGACGTTTAGG  297

Query  319   AATCTCTACTTAGAGTATCTCCCA-AACGGTGACGTGGCTAGTCACAGAGCCGGAGGAAA  377
             ||||||||||| |||||||| ||| || ||||||||||||| | |||  |  ||||||| 
Sbjct  298   AATCTCTACTTGGAGTATCTACCAGAA-GGTGACGTGGCTAATTACACTGTTGGAGGAAT  356

Query  378   -AATCGAAGACGAGACTCTGCTCCAGCGTTACACGGCGTGTCTTGTCTCTGCTCTCCGCC  436
              || |||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  357   TAA-CGA---CGAGACTCTGCTCCAGCGTTACACGGCGTGTCTTGTCTCTGCTCTCCGCC  412

Query  437   ACGTACACTCTCAAGGATTCGTTCACTGCGACGTCAAGGCGAGGAACATCCTCGTCAGCC  496
             |||| |||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct  413   ACGTCCACTCTCATGGATTCGTTCACTGCGACGTCAAGGCGAGAAACGTCCTCGTCAGCC  472

Query  497   AAAGCTCCATGGTCAAGTTAGCCGATTTTGGGTCGGCGTTCAGAATCCACACACCGAGGG  556
             ||||||||||| ||||| |||||||||| |||||||||||||||||||| ||||| |  |
Sbjct  473   AAAGCTCCATGATCAAGCTAGCCGATTTCGGGTCGGCGTTCAGAATCCATACACCAACAG  532

Query  557   CTCTGATCACGCCACGTGGAAGTCCGCTTTGGATGGCTCCGGAGGTGATCAGACGAGAGT  616
             | | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  533   CACAGATCACGCCACGTGGAAGCCCGCTTTGGATGGCTCCGGAGGTGATCAGACGAGAGT  592

Query  617   ACCAAGGTCCGGAGAGTGACGTCTGGTCTCTCGGCTGCACGATCATCGAGATGTTCACTG  676
             |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct  593   ACCAAGGTCCGGAGAGCGACGTCTGGTCTCTCGGCTGCACGATCATCGAGATGTTTACTG  652

Query  677   GGAAACCCGCTTGGGAAGACCACGGAATT---GACTCGCTGAGTCGAATCAGTTTCTCTG  733
             ||||||||||||||||||||||||| |||   |||||||||||||||||| ||||||| |
Sbjct  653   GGAAACCCGCTTGGGAAGACCACGGGATTATAGACTCGCTGAGTCGAATCGGTTTCTCCG  712

Query  734   ACGAGTTACCGGTTTTCCCCTCGAAGTTGTCGGAAATCGGCCGTGATTTCCTAGAAAAGT  793
             |||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||
Sbjct  713   ACGAGTTACCGGTTTTCCCCTCGAAGCTGTCGGAAATCGGCTGTGACTTCCTAGAAAAGT  772

Query  794   GTCTGAAGCGAGACCCGAATCAGAGGTGGAGTTGCGATCAGCTTTTGCAGCATCCATTTC  853
             |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct  773   GTCTAAAGAGAGACCCGAATCAGAGATGGAGTTGCGATCAGCTTTTGCAGCATCCTTTTC  832

Query  854   TCTCTCAGTGTCACAACTCATCTCCGACTGAGTCATCTCCGCGTTGCGTACTTGACTGGG  913
             | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  833   TGTCTCAGTGTCACAACTCGTCTCCGACTGAGTCATCTCCGCGTTGCGTACTTGACTGGG  892

Query  914   TCAACTCGGGGTTTGACTTAGAAGAAGAAGAAGAGGAAGTAGGGAGATCAGAATTCGAAG  973
             ||||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct  893   TCAACTCCGGATTTGACTTAGAAGAAGAAGAGGAGGAAGTAGGAAGATCAGAATTCGAAG  952

Query  974   ACGCGGCGAAGGCAATAATTTGTAATTTGGCGACGACCGGAGGAGTAATTTGGGAGTCAG  1033
             ||||||||| ||||| ||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct  953   ACGCGGCGATGGCAAGAATTTGTAATTTGGCGACGACCGGAGGGGCAATTTGGGAATCAG  1012

Query  1034  ATGGTTGGGTGGAAGTTAGATGCCACGCTTCGGAAGAGGAAGGGACAACAATGGAATATT  1093
             |||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||
Sbjct  1013  ATGGTTGGGTGGAAGTCAGATGCCACTCTTCGGAAGAGGAAGGGACAAGAATGGAATATT  1072

Query  1094  CGGGATCCACAAGGGTAGAATCGGAATATAACACATCATCGGATCCAAACGATGACGTGG  1153
             |||||||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| 
Sbjct  1073  CGGGATCCACAAGGGTAGTATCGGCATATAACACATCATCGGATCCGTACGATGACGTG-  1131

Query  1154  CTGGTGACTCGGCGATAATTGACGTTTCTATGTCTCAGAATTTACCGCCTGGAAACGGGG  1213
             |      |  |   |||||||||||||  ||||    |  ||| ||||| ||||||||||
Sbjct  1132  C------C--G---ATAATTGACGTTT--ATGT----G--TTT-CCGCCGGGAAACGGGG  1171

Query  1214  GATCGGCGGCGGCGCTGC--C-ATATGAATTTGTGGTGGTTTTACATTTATTAATGGAAA  1270
             ||||||||||||||||||  | ||||||||| ||| ||||||||||||||||||||||||
Sbjct  1172  GATCGGCGGCGGCGCTGCTGCCATATGAATTAGTGATGGTTTTACATTTATTAATGGAAA  1231

Query  1271  TTATGGTTTATACTACATGTATCTTTAGGGAAATTGTTCTCACTATGTATT-T-GTT---  1325
             ||| |||||||||||||||| |||||||  ||||||| |||| |||| ||| | |||   
Sbjct  1232  TTACGGTTTATACTACATGTGTCTTTAGCAAAATTGTCCTCATTATGAATTGTTGTTATC  1291

Query  1326  -GTATCA--GT-ATAATCA-AAGCAATAAACTCGAAACGTTGTCTTTTAATCACAGCCTC  1380
              ||||||  || ||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct  1292  AGTATCATCGTGATAATAATAA-CAATAAACTCGAAACGTTGTCTTTTAATCACAGCCTC  1350

Query  1381  AAGTTTTGTTTGTTTGCACAT  1401
             |||||||||||||||||||||
Sbjct  1351  AAGTTTTGTTTGTTTGCACAT  1371


> Ahg344762 jgi|Araly1|344762|fgenesh1_pg.C_scaffold_4001104
Length=1239

 Score =  453 bits (245),  Expect = 2e-126
 Identities = 828/1098 (75%), Gaps = 86/1098 (8%)
 Strand=Plus/Plus

Query  76    TCTTCTTTTTGGGTTCGTGGTGCGTGTATCGGCA-GAGGTTGTTTCGGTGCAGTTAGTAC  134
             ||||||| |||| |||||||| | ||||| || | |||||||||| ||| | ||||| | 
Sbjct  31    TCTTCTTCTTGGATTCGTGGTTCTTGTATTGG-ACGAGGTTGTTTTGGTTCCGTTAGCAA  89

Query  135   GGCGATCAGCAAAACCAACGGTGAAGTTTTCGCCGTGAAATCCGTGGATCTCGCCACGAG  194
              ||  | || |||| | |||||| ||||||||||||||| ||  | || ||| ||||| |
Sbjct  90    AGCTTTGAGTAAAATCGACGGTGGAGTTTTCGCCGTGAAGTCTATAGACCTCTCCACGTG  149

Query  195   TCTCCCCACTCAATCAGAGTC-TCTCGAGAACGAAAT--ATCTGTCTTCCGCTCGCTAAA  251
             ||| ||  ||||| | ||||| | | |||||||||||   | | || |||| ||| | ||
Sbjct  150   TCTTCCTTCTCAAGCCGAGTCGT-TAGAGAACGAAATCGTTAT-TC-TCCGGTCGATGAA  206

Query  252   GCCTCACCCTTACATCGTGAAGTTTCTCGGCGACGGA-GTCTCGAAAGAAGGAACGACGA  310
             | |||| ||  |||| |||| ||||||||||||  || || || ||||||||||||||| 
Sbjct  207   GTCTCATCCAAACATAGTGAGGTTTCTCGGCGA-TGACGTTTCTAAAGAAGGAACGACGT  265

Query  311   CGTTTAGGAATC-TCTACTTAGAGTA-TCTCCCAAACGGTGACGTGGCTAGTCACAGAGC  368
             ||||| | |||| || | |||||||| || ||  || |||||||| |   | || | |  
Sbjct  266   CGTTTCGTAATCTTC-ATTTAGAGTATTCACCGGAA-GGTGACGT-G---G-CA-A-A--  314

Query  369   CGGAGGAAAAATCGAAGACGAGACTCTGCTCCAGCGTTACACG-GCGTGTCTTGTCTCTG  427
             ||| ||||   ||  | |||| || || |||| |||||||  | | ||||||||||||||
Sbjct  315   CGGTGGAATTGTC--A-ACGAAACGCTTCTCCGGCGTTACGTGTG-GTGTCTTGTCTCTG  370

Query  428   CTCTCCGCCACGTACACT-CTCAA-GG-ATTCGTTCACTGCGACGTCAAGGCGAGGAAC-  483
             ||||  | ||||| || | || || || ||| |||||||||||||| ||  | | |||| 
Sbjct  371   CTCTGAGTCACGTTCA-TGCT-AACGGAATT-GTTCACTGCGACGTTAAATCTAAGAACG  427

Query  484   ATCCT-CG--TCA-GCCA-AAGCTCCATGGTCAAGTTAGCCGATTTTGGGTCGGC-GTTC  537
              || |  |  | | |  |  ||||||   || ||| | || |||||||| ||||| ||| 
Sbjct  428   TTCTTGTGTTTAACGGTAGTAGCTCC---GTTAAGCTGGCGGATTTTGGATCGGCGGTTG  484

Query  538   AGAATCCACACACCGAGGGCTC-TGATCACGCCACGTGGAAGTCCGCTTTGGATGGCTCC  596
              |  |  | | | ||| || ||  | |  |||||||||||||||||||||||||||||||
Sbjct  485   TG-TTTGAGAAATCGACGGTTCAGGCT-TCGCCACGTGGAAGTCCGCTTTGGATGGCTCC  542

Query  597   GGAGGTGATCAGACGAGAGTACCAAGGTCCGGAGAGTGACGTCTGGTCTCTCGGCTGCAC  656
             ||||||||| ||||| ||||||||||| |||||||||||||| |||||| | || || ||
Sbjct  543   GGAGGTGATTAGACGTGAGTACCAAGGACCGGAGAGTGACGTGTGGTCTTTAGGATGTAC  602

Query  657   GATCATCGAGATGTTCACTGGGAAACCCGCTTGGGAAGACCACGGAATT-GACTCGCTGA  715
             | |||| |||||| |||| || ||||| || |||||||| |||||  || ||||||||||
Sbjct  603   GGTCATAGAGATGCTCACCGGAAAACCAGCCTGGGAAGATCACGGT-TTCGACTCGCTGA  661

Query  716   GTCGAATCAG-TTTCTCTGACGAGTTACCGGTT-TTCCC-CTCGAAGTTGTCGGAAATCG  772
             |||| ||| | ||| ||| ||||||| ||  || ||||  |  ||  || |||||| |||
Sbjct  662   GTCGGATCGGGTTT-TCTAACGAGTTGCCATTTATTCCGGCGGGA--TTATCGGAACTCG  718

Query  773   GCCGTGATTTCCTAGA-AAAGTGTCT-GAAGCGAGACCCGAATCAGAGGTGGAGTTGCGA  830
             |  | |||||| | || ||| || || ||| || || | || |||| |||||||||| ||
Sbjct  719   GGAGAGATTTCTTGGAGAAA-TG-CTTGAAACGTGATCGGAGTCAGCGGTGGAGTTGTGA  776

Query  831   TCAGCTTTTGCAGCATCCATTTCTCTCTCA-GTGTCA-CA--ACTCAT-CTCCGACTGAG  885
             |||||||||||||||||| ||||| | ||| |  ||| ||  |||| | ||  ||| |||
Sbjct  777   TCAGCTTTTGCAGCATCCGTTTCTGTTTCAAGA-TCATCATGACTCGTTCTT-GACCGAG  834

Query  886   TCATCTCCGCGTTGCGTACTTGACTGGGTCAACTCGGGGTTTGACTTAGAAGAAGAAGAA  945
             || |||||||||||||| ||||||||||||||||||| ||| |||   ||||||||||| 
Sbjct  835   TCGTCTCCGCGTTGCGTTCTTGACTGGGTCAACTCGGAGTTCGAC---GAAGAAGAAGA-  890

Query  946   GAGGAA-GTAG-GGAGATCAGAATTCGAAGACG-CGGCGAA-GGCAATAATTTGTAATTT  1001
             ||| || | || ||||| |||||| | | |    | || || |||||  ||  |||| ||
Sbjct  891   GAGCAACG-AGTGGAGACCAGAATCC-ATGGTTTCAGC-AATGGCAAGGATAAGTAAATT  947

Query  1002  GGCGACGACCGGAGGAGTAATTTGGGAGTC-AGATGGTTGGG-TGGAAGTTAGATGCCAC  1059
              ||||  |||||||| | || |||||| || | ||||||||  || | |||||| | |||
Sbjct  948   AGCGATAACCGGAGGGGCAAATTGGGAATCTA-ATGGTTGGACTG-AGGTTAGA-GACAC  1004

Query  1060  GCTTCGGAAGAGGAAGGGACAACAATGGAATATTCGGGATCCA-CAAGGGTAGAATCGGA  1118
               ||| ||||||  |||| ||| || ||||  |||  | | || |||||||||||| || 
Sbjct  1005  --TTCCGAAGAGTCAGGGGCAATAAAGGAAG-TTCCTGTTTCAACAAGGGTAGAATTGGG  1061

Query  1119  ATATAACACATCATCGGA  1136
             || |||||||||||||||
Sbjct  1062  ATTTAACACATCATCGGA  1079



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 56830645540


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5