BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G07150.1 Length=1518 Score E Sequences producing significant alignments: (Bits) Value Ahg334013 jgi|Araly1|334013|fgenesh1_pg.C_scaffold_1000578 1801 0.0 Ahg344762 jgi|Araly1|344762|fgenesh1_pg.C_scaffold_4001104 453 2e-126 > Ahg334013 jgi|Araly1|334013|fgenesh1_pg.C_scaffold_1000578 Length=2118 Score = 1801 bits (975), Expect = 0.0 Identities = 1267/1401 (90%), Gaps = 48/1401 (3%) Strand=Plus/Plus Query 19 ATGGAGAAACAGAGCATCAGAAACACTTGTTCTTCTTCTTTAATGTTATCCTCACCATCT 78 |||||||||||||| |||||||||| |||||||||||| || | || | | ||||| Sbjct 1 ATGGAGAAACAGAGTATCAGAAACATTTGTTCTTCTTC-TTCTTCTT-TAAT-GTCATCT 57 Query 79 TCTTTTTGGGTTCGTGGTGCGTGTATCGGCAGAGGTTGTTTCGGTGCAGTTAGTACGGCG 138 |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 58 TCTTCTTGGGTTCGTGGTGCGTGTATCGGAAGAGGTTGTTTCGGTGCAGTTAGTACGGCG 117 Query 139 ATCAGCAAAACCAACGGTGAAGTTTTCGCCGTGAAATCCGTGGATCTCGCCACGAGTCTC 198 |||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| Sbjct 118 ATCAGCAAAACCAACGGTGAAGTTTTTGCCGTGAAATCCGTGGATCTCACCACTTGTCTC 177 Query 199 CCCACTCAATCAGAGTCTCTCGAGAACGAAATATCTGTCTTCCGCTCGCTAAAGCCTCAC 258 ||||| |||||||||||||||||||||||||| |||||| || | ||||| ||||||||| Sbjct 178 CCCACCCAATCAGAGTCTCTCGAGAACGAAATCTCTGTCCTCTGTTCGCTCAAGCCTCAC 237 Query 259 CCTTACATCGTGAAGTTTCTCGGCGACGGAGTCTCGAAAGAAGGAACGACGACGTTTAGG 318 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 CCTCACATCGTGAAGTTTCTCGGCGACGGAGTCTCGAAAGAAGGAACGACGACGTTTAGG 297 Query 319 AATCTCTACTTAGAGTATCTCCCA-AACGGTGACGTGGCTAGTCACAGAGCCGGAGGAAA 377 ||||||||||| |||||||| ||| || ||||||||||||| | ||| | ||||||| Sbjct 298 AATCTCTACTTGGAGTATCTACCAGAA-GGTGACGTGGCTAATTACACTGTTGGAGGAAT 356 Query 378 -AATCGAAGACGAGACTCTGCTCCAGCGTTACACGGCGTGTCTTGTCTCTGCTCTCCGCC 436 || ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 TAA-CGA---CGAGACTCTGCTCCAGCGTTACACGGCGTGTCTTGTCTCTGCTCTCCGCC 412 Query 437 ACGTACACTCTCAAGGATTCGTTCACTGCGACGTCAAGGCGAGGAACATCCTCGTCAGCC 496 |||| |||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 413 ACGTCCACTCTCATGGATTCGTTCACTGCGACGTCAAGGCGAGAAACGTCCTCGTCAGCC 472 Query 497 AAAGCTCCATGGTCAAGTTAGCCGATTTTGGGTCGGCGTTCAGAATCCACACACCGAGGG 556 ||||||||||| ||||| |||||||||| |||||||||||||||||||| ||||| | | Sbjct 473 AAAGCTCCATGATCAAGCTAGCCGATTTCGGGTCGGCGTTCAGAATCCATACACCAACAG 532 Query 557 CTCTGATCACGCCACGTGGAAGTCCGCTTTGGATGGCTCCGGAGGTGATCAGACGAGAGT 616 | | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 533 CACAGATCACGCCACGTGGAAGCCCGCTTTGGATGGCTCCGGAGGTGATCAGACGAGAGT 592 Query 617 ACCAAGGTCCGGAGAGTGACGTCTGGTCTCTCGGCTGCACGATCATCGAGATGTTCACTG 676 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 593 ACCAAGGTCCGGAGAGCGACGTCTGGTCTCTCGGCTGCACGATCATCGAGATGTTTACTG 652 Query 677 GGAAACCCGCTTGGGAAGACCACGGAATT---GACTCGCTGAGTCGAATCAGTTTCTCTG 733 ||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| | Sbjct 653 GGAAACCCGCTTGGGAAGACCACGGGATTATAGACTCGCTGAGTCGAATCGGTTTCTCCG 712 Query 734 ACGAGTTACCGGTTTTCCCCTCGAAGTTGTCGGAAATCGGCCGTGATTTCCTAGAAAAGT 793 |||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| Sbjct 713 ACGAGTTACCGGTTTTCCCCTCGAAGCTGTCGGAAATCGGCTGTGACTTCCTAGAAAAGT 772 Query 794 GTCTGAAGCGAGACCCGAATCAGAGGTGGAGTTGCGATCAGCTTTTGCAGCATCCATTTC 853 |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 773 GTCTAAAGAGAGACCCGAATCAGAGATGGAGTTGCGATCAGCTTTTGCAGCATCCTTTTC 832 Query 854 TCTCTCAGTGTCACAACTCATCTCCGACTGAGTCATCTCCGCGTTGCGTACTTGACTGGG 913 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 833 TGTCTCAGTGTCACAACTCGTCTCCGACTGAGTCATCTCCGCGTTGCGTACTTGACTGGG 892 Query 914 TCAACTCGGGGTTTGACTTAGAAGAAGAAGAAGAGGAAGTAGGGAGATCAGAATTCGAAG 973 ||||||| || |||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 893 TCAACTCCGGATTTGACTTAGAAGAAGAAGAGGAGGAAGTAGGAAGATCAGAATTCGAAG 952 Query 974 ACGCGGCGAAGGCAATAATTTGTAATTTGGCGACGACCGGAGGAGTAATTTGGGAGTCAG 1033 ||||||||| ||||| ||||||||||||||||||||||||||| | ||||||||| |||| Sbjct 953 ACGCGGCGATGGCAAGAATTTGTAATTTGGCGACGACCGGAGGGGCAATTTGGGAATCAG 1012 Query 1034 ATGGTTGGGTGGAAGTTAGATGCCACGCTTCGGAAGAGGAAGGGACAACAATGGAATATT 1093 |||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 1013 ATGGTTGGGTGGAAGTCAGATGCCACTCTTCGGAAGAGGAAGGGACAAGAATGGAATATT 1072 Query 1094 CGGGATCCACAAGGGTAGAATCGGAATATAACACATCATCGGATCCAAACGATGACGTGG 1153 |||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| Sbjct 1073 CGGGATCCACAAGGGTAGTATCGGCATATAACACATCATCGGATCCGTACGATGACGTG- 1131 Query 1154 CTGGTGACTCGGCGATAATTGACGTTTCTATGTCTCAGAATTTACCGCCTGGAAACGGGG 1213 | | | ||||||||||||| |||| | ||| ||||| |||||||||| Sbjct 1132 C------C--G---ATAATTGACGTTT--ATGT----G--TTT-CCGCCGGGAAACGGGG 1171 Query 1214 GATCGGCGGCGGCGCTGC--C-ATATGAATTTGTGGTGGTTTTACATTTATTAATGGAAA 1270 |||||||||||||||||| | ||||||||| ||| |||||||||||||||||||||||| Sbjct 1172 GATCGGCGGCGGCGCTGCTGCCATATGAATTAGTGATGGTTTTACATTTATTAATGGAAA 1231 Query 1271 TTATGGTTTATACTACATGTATCTTTAGGGAAATTGTTCTCACTATGTATT-T-GTT--- 1325 ||| |||||||||||||||| ||||||| ||||||| |||| |||| ||| | ||| Sbjct 1232 TTACGGTTTATACTACATGTGTCTTTAGCAAAATTGTCCTCATTATGAATTGTTGTTATC 1291 Query 1326 -GTATCA--GT-ATAATCA-AAGCAATAAACTCGAAACGTTGTCTTTTAATCACAGCCTC 1380 |||||| || ||||| | || ||||||||||||||||||||||||||||||||||||| Sbjct 1292 AGTATCATCGTGATAATAATAA-CAATAAACTCGAAACGTTGTCTTTTAATCACAGCCTC 1350 Query 1381 AAGTTTTGTTTGTTTGCACAT 1401 ||||||||||||||||||||| Sbjct 1351 AAGTTTTGTTTGTTTGCACAT 1371 > Ahg344762 jgi|Araly1|344762|fgenesh1_pg.C_scaffold_4001104 Length=1239 Score = 453 bits (245), Expect = 2e-126 Identities = 828/1098 (75%), Gaps = 86/1098 (8%) Strand=Plus/Plus Query 76 TCTTCTTTTTGGGTTCGTGGTGCGTGTATCGGCA-GAGGTTGTTTCGGTGCAGTTAGTAC 134 ||||||| |||| |||||||| | ||||| || | |||||||||| ||| | ||||| | Sbjct 31 TCTTCTTCTTGGATTCGTGGTTCTTGTATTGG-ACGAGGTTGTTTTGGTTCCGTTAGCAA 89 Query 135 GGCGATCAGCAAAACCAACGGTGAAGTTTTCGCCGTGAAATCCGTGGATCTCGCCACGAG 194 || | || |||| | |||||| ||||||||||||||| || | || ||| ||||| | Sbjct 90 AGCTTTGAGTAAAATCGACGGTGGAGTTTTCGCCGTGAAGTCTATAGACCTCTCCACGTG 149 Query 195 TCTCCCCACTCAATCAGAGTC-TCTCGAGAACGAAAT--ATCTGTCTTCCGCTCGCTAAA 251 ||| || ||||| | ||||| | | ||||||||||| | | || |||| ||| | || Sbjct 150 TCTTCCTTCTCAAGCCGAGTCGT-TAGAGAACGAAATCGTTAT-TC-TCCGGTCGATGAA 206 Query 252 GCCTCACCCTTACATCGTGAAGTTTCTCGGCGACGGA-GTCTCGAAAGAAGGAACGACGA 310 | |||| || |||| |||| |||||||||||| || || || ||||||||||||||| Sbjct 207 GTCTCATCCAAACATAGTGAGGTTTCTCGGCGA-TGACGTTTCTAAAGAAGGAACGACGT 265 Query 311 CGTTTAGGAATC-TCTACTTAGAGTA-TCTCCCAAACGGTGACGTGGCTAGTCACAGAGC 368 ||||| | |||| || | |||||||| || || || |||||||| | | || | | Sbjct 266 CGTTTCGTAATCTTC-ATTTAGAGTATTCACCGGAA-GGTGACGT-G---G-CA-A-A-- 314 Query 369 CGGAGGAAAAATCGAAGACGAGACTCTGCTCCAGCGTTACACG-GCGTGTCTTGTCTCTG 427 ||| |||| || | |||| || || |||| ||||||| | | |||||||||||||| Sbjct 315 CGGTGGAATTGTC--A-ACGAAACGCTTCTCCGGCGTTACGTGTG-GTGTCTTGTCTCTG 370 Query 428 CTCTCCGCCACGTACACT-CTCAA-GG-ATTCGTTCACTGCGACGTCAAGGCGAGGAAC- 483 |||| | ||||| || | || || || ||| |||||||||||||| || | | |||| Sbjct 371 CTCTGAGTCACGTTCA-TGCT-AACGGAATT-GTTCACTGCGACGTTAAATCTAAGAACG 427 Query 484 ATCCT-CG--TCA-GCCA-AAGCTCCATGGTCAAGTTAGCCGATTTTGGGTCGGC-GTTC 537 || | | | | | | |||||| || ||| | || |||||||| ||||| ||| Sbjct 428 TTCTTGTGTTTAACGGTAGTAGCTCC---GTTAAGCTGGCGGATTTTGGATCGGCGGTTG 484 Query 538 AGAATCCACACACCGAGGGCTC-TGATCACGCCACGTGGAAGTCCGCTTTGGATGGCTCC 596 | | | | | ||| || || | | ||||||||||||||||||||||||||||||| Sbjct 485 TG-TTTGAGAAATCGACGGTTCAGGCT-TCGCCACGTGGAAGTCCGCTTTGGATGGCTCC 542 Query 597 GGAGGTGATCAGACGAGAGTACCAAGGTCCGGAGAGTGACGTCTGGTCTCTCGGCTGCAC 656 ||||||||| ||||| ||||||||||| |||||||||||||| |||||| | || || || Sbjct 543 GGAGGTGATTAGACGTGAGTACCAAGGACCGGAGAGTGACGTGTGGTCTTTAGGATGTAC 602 Query 657 GATCATCGAGATGTTCACTGGGAAACCCGCTTGGGAAGACCACGGAATT-GACTCGCTGA 715 | |||| |||||| |||| || ||||| || |||||||| ||||| || |||||||||| Sbjct 603 GGTCATAGAGATGCTCACCGGAAAACCAGCCTGGGAAGATCACGGT-TTCGACTCGCTGA 661 Query 716 GTCGAATCAG-TTTCTCTGACGAGTTACCGGTT-TTCCC-CTCGAAGTTGTCGGAAATCG 772 |||| ||| | ||| ||| ||||||| || || |||| | || || |||||| ||| Sbjct 662 GTCGGATCGGGTTT-TCTAACGAGTTGCCATTTATTCCGGCGGGA--TTATCGGAACTCG 718 Query 773 GCCGTGATTTCCTAGA-AAAGTGTCT-GAAGCGAGACCCGAATCAGAGGTGGAGTTGCGA 830 | | |||||| | || ||| || || ||| || || | || |||| |||||||||| || Sbjct 719 GGAGAGATTTCTTGGAGAAA-TG-CTTGAAACGTGATCGGAGTCAGCGGTGGAGTTGTGA 776 Query 831 TCAGCTTTTGCAGCATCCATTTCTCTCTCA-GTGTCA-CA--ACTCAT-CTCCGACTGAG 885 |||||||||||||||||| ||||| | ||| | ||| || |||| | || ||| ||| Sbjct 777 TCAGCTTTTGCAGCATCCGTTTCTGTTTCAAGA-TCATCATGACTCGTTCTT-GACCGAG 834 Query 886 TCATCTCCGCGTTGCGTACTTGACTGGGTCAACTCGGGGTTTGACTTAGAAGAAGAAGAA 945 || |||||||||||||| ||||||||||||||||||| ||| ||| ||||||||||| Sbjct 835 TCGTCTCCGCGTTGCGTTCTTGACTGGGTCAACTCGGAGTTCGAC---GAAGAAGAAGA- 890 Query 946 GAGGAA-GTAG-GGAGATCAGAATTCGAAGACG-CGGCGAA-GGCAATAATTTGTAATTT 1001 ||| || | || ||||| |||||| | | | | || || ||||| || |||| || Sbjct 891 GAGCAACG-AGTGGAGACCAGAATCC-ATGGTTTCAGC-AATGGCAAGGATAAGTAAATT 947 Query 1002 GGCGACGACCGGAGGAGTAATTTGGGAGTC-AGATGGTTGGG-TGGAAGTTAGATGCCAC 1059 |||| |||||||| | || |||||| || | |||||||| || | |||||| | ||| Sbjct 948 AGCGATAACCGGAGGGGCAAATTGGGAATCTA-ATGGTTGGACTG-AGGTTAGA-GACAC 1004 Query 1060 GCTTCGGAAGAGGAAGGGACAACAATGGAATATTCGGGATCCA-CAAGGGTAGAATCGGA 1118 ||| |||||| |||| ||| || |||| ||| | | || |||||||||||| || Sbjct 1005 --TTCCGAAGAGTCAGGGGCAATAAAGGAAG-TTCCTGTTTCAACAAGGGTAGAATTGGG 1061 Query 1119 ATATAACACATCATCGGA 1136 || ||||||||||||||| Sbjct 1062 ATTTAACACATCATCGGA 1079 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56830645540 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5