BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G07250.1 Length=1667 Score E Sequences producing significant alignments: (Bits) Value Ahg919449 jgi|Araly1|919449|scaffold_100730.1 2204 0.0 > Ahg919449 jgi|Araly1|919449|scaffold_100730.1 Length=1483 Score = 2204 bits (1193), Expect = 0.0 Identities = 1378/1470 (94%), Gaps = 2/1470 (0%) Strand=Plus/Plus Query 57 AAGAGAGATGGTGAAGGAAACAGAGCTAATCTTCATTCCAGTTCCATCCACAGGTCATAT 116 ||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 14 AAGAGAGATGGAGAAGGAAACAGAGCTCATCTTCGTTCCAGTTCCATCCACAGGTCATAT 73 Query 117 TCTCGTCCATATTGAATTCGCCAAGCGTCTCATCAATCTCGACCATCGGATCCACACCAT 176 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 74 TCTCGTCCATATTGAATTCGCCAAGCGTCTCATCAATCTCGACCATCGGATCCACACAAT 133 Query 177 CACTATTCTCAACTTATCCTCACCCTCTTCTCCTCACGCCTCCGTCTTCGCCAGATCTCT 236 |||||| |||||||| || ||||||||| ||||| ||||||||||||||||||||||||| Sbjct 134 CACTATCCTCAACTTGTCTTCACCCTCTGCTCCTGACGCCTCCGTCTTCGCCAGATCTCT 193 Query 237 CATCGCTTCCCAGCCCAAAATCCGTCTCCACGACCTTCCCCCTATCCAAGATCCTCCTCC 296 ||||||||| ||||||| ||| |||||||| ||||||||| ||| ||||||||||||||| Sbjct 194 CATCGCTTCACAGCCCAGAATACGTCTCCATGACCTTCCCTCTACCCAAGATCCTCCTCC 253 Query 297 ATTCGATCTTTACCAAAGAGCTCCCGAAGCTTACATAGTAAAACTCATCAAGAAAAATAC 356 ||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||| ||| Sbjct 254 ATTTGATCTCTACCAAAGAGCTCCGGAAGCTTACATAGTAAAGCTCATCAAGAAAACTAC 313 Query 357 TCCTCTGATAAAAGACGCCGTCTCCAGCATCGTCGCGTCGCGTCGTGGAGGCTCAGATTC 416 ||||||||| ||||||||||||||||||||||||| |||||||||| |||| |||||||| Sbjct 314 TCCTCTGATCAAAGACGCCGTCTCCAGCATCGTCGAGTCGCGTCGTCGAGGATCAGATTC 373 Query 417 GGTTCAAGTCGCCGGTTTGGTTCTCGATTTATTCTGCAATTCATTGGTAAAAGATGTTGG 476 ||||| |||||||||| |||||||||||||||| |||||||||||| |||| |||||||| Sbjct 374 GGTTCGAGTCGCCGGTCTGGTTCTCGATTTATTTTGCAATTCATTGATAAATGATGTTGG 433 Query 477 CAACGAGCTTAATCTTCCTTCTTACATATACCTTACGTGTAACGCTAGATACTTGGGGAT 536 ||||||||| ||||||||||| ||||||| ||| ||||||||||||||||| |||||||| Sbjct 434 CAACGAGCTGAATCTTCCTTCCTACATATTCCTCACGTGTAACGCTAGATATTTGGGGAT 493 Query 537 GATGAAATATATTCCGGATCGGCATCGGAAAATCGCATCTGAGTTCGATTTGAGCTCCGG 596 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 494 GATGAAATATATTCCAGATCGGCATCGGAAAATCGCATCTGAGTTCGATTTGAGCTCCGG 553 Query 597 CGATGAAGAATTGCCGGTTCCGGGATTCATAAACGCTATTCCGACGAAATTTATGCCGCC 656 |||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 554 CGATGAGGAATTGCCGGTTCCAGGATTCATAAACGCTATTCCGACCAAATTTATGCCGCC 613 Query 657 TGGATTGTTCAATAAGGAAGCTTACGAGGCTTACGTAGAGCTAGCGCCGAGATTCGCAGA 716 |||||||||||| || |||||||||||||||||||| |||||||||||||||||||| || Sbjct 614 TGGATTGTTCAACAAAGAAGCTTACGAGGCTTACGTCGAGCTAGCGCCGAGATTCGCCGA 673 Query 717 TGCGAAGGGTATTTTGGTTAATTCCTTCACGGAGCTTGAGCCGCACCCGTTTGACTATTT 776 ||||||||||||| |||| ||||||||| | ||||||||||| ||||||||||||||||| Sbjct 674 TGCGAAGGGTATTATGGTAAATTCCTTCGCCGAGCTTGAGCCACACCCGTTTGACTATTT 733 Query 777 CTCTCACCTGGAGAAA-TTCCCTCCGGTTTACCCGGTCGGACCGATTCTCAGCTTGAAAG 835 |||||||||||| || ||||||||||| ||||| ||||| ||||||||||||||||||| Sbjct 734 CTCTCACCTGGA-AAGCTTCCCTCCGGTGTACCCAGTCGGGCCGATTCTCAGCTTGAAAG 792 Query 836 ATCGAGCGAGTCCGAACGAAGAAGCAGTCGATCGGGATCAGATCGTTGGGTGGCTCGATG 895 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct 793 ATCGAGCGAGTCCGAACGAAGAAGCAGCCGATCGGGATCAGATCGTTGGGTGGCTTGATG 852 Query 896 ATCAGCCGGAGTCATCGGTGGTGTTCCTCTGTTTCGGGAGCAGAGGAAGCGTTGATGAGC 955 ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 853 ATCAGCCAGAGTCCTCGGTGGTGTTCCTCTGTTTCGGGAGCAGAGGAAGCGTTGATGAGA 912 Query 956 CGCAAGTGAAGGAGATAGCTCGAGCTTTGGAACTCGTCGGCTGCAGATTTCTTTGGTCAA 1015 ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 913 CGCAAGTGAAGGAGATAGCTCAAGCGTTGGAACTCGTCGGCTGCAGATTTCTTTGGTCAA 972 Query 1016 TTAGAACAAGCGGCGACGTCGAGACGAATCCTAACGATGTGTTGCCGGAGGGGTTCATGG 1075 || |||||||||||| ||| | ||||||| |||||||||||||||||||||||||||||| Sbjct 973 TTCGAACAAGCGGCGCCGTGGGGACGAATGCTAACGATGTGTTGCCGGAGGGGTTCATGG 1032 Query 1076 GCCGAGTAGCAGGCCGAGGTTTGGTATGTGGTTGGGCTCCACAAGTGGAAGTGTTGGCCC 1135 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1033 GCCGAGTAGCGGGCCGAGGTTTGGTATGTGGTTGGGCTCCACAAGTGGAAGTGTTGGCCC 1092 Query 1136 ATAAAGCAATAGGAGGATTTGTGTCTCACTGTGGTTGGAACTCCACGCTTGAAAGCTTAT 1195 ||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||| Sbjct 1093 ATAAAGCAATAGGCGGATTTGTGTCTCACTGTGGTTGGAATTCTACGCTTGAAAGCTTAT 1152 Query 1196 GGTTCGGGGTTCCTGTCGCAACGTGGCCGATGTACGCAGAGCAACAGCTTAACGCCTTCA 1255 ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 1153 GGTTCGGCGTTCCTGTCGCCACGTGGCCGATGTACGCAGAGCAACAGCTTAACGCTTTCA 1212 Query 1256 CGCTGGTGAAAGAGCTTGGGCTTGCGGTGGACCTGCGGATGGATTACGTGTCGAGTCGTG 1315 || |||||||||||||||| ||||||||||| || ||||||||||||||||||| ||||| Sbjct 1213 CGTTGGTGAAAGAGCTTGGACTTGCGGTGGATCTCCGGATGGATTACGTGTCGAATCGTG 1272 Query 1316 GGGGTTTGGTGACTTGTGATGAGATAGCCAGAGCCGTACGATCTTTGATGGACGGTGGAG 1375 ||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| | Sbjct 1273 GGGGTTTGGTGGCTTGTGATGAGATAGCCAGAGCCGTCCGATCGTTGATGGACGGTGGGG 1332 Query 1376 ATGAGAAGAGAAAAAAGGTTAAGGAGATGGCTGATGCGGCAAGGAAGGCTTTGATGGATG 1435 ||||||| || |||||||||||||||||||||||||| || ||||||||||||| ||||| Sbjct 1333 ATGAGAAAAGGAAAAAGGTTAAGGAGATGGCTGATGCAGCGAGGAAGGCTTTGAGGGATG 1392 Query 1436 GAGGATCGTCTTCTTTGGCAACTGCTCGATTCATCGCAGAATTGTTTGAAGATGGTTCGT 1495 |||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct 1393 GAGGATCGTCGTCTTTGGCAACTGCTCGATTCATCGGAGAATTGTTTGAAGATAGTTCGT 1452 Query 1496 CGTGCTAATGCAAATGTTGGTGCGATAATT 1525 |||| |||||||||||||||||| || ||| Sbjct 1453 CGTGTTAATGCAAATGTTGGTGCAATCATT 1482 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62506092045 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5