BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G07310.1 Length=1453 Score E Sequences producing significant alignments: (Bits) Value Ahg470748 jgi|Araly1|470748|fgenesh2_kg.1__702__AT1G07310.1 1899 0.0 > Ahg470748 jgi|Araly1|470748|fgenesh2_kg.1__702__AT1G07310.1 Length=1390 Score = 1899 bits (1028), Expect = 0.0 Identities = 1310/1434 (91%), Gaps = 68/1434 (5%) Strand=Plus/Plus Query 44 TTTGATACAGATATTTGAGATACGAGCGCACGTTAGCTAAGACCACCGCGTAAGCCACCG 103 |||||||||||||| | ||||||||||||||||||||| | | | |||| Sbjct 1 TTTGATACAGATATCTAAGATACGAGCGCACGTTAGCT---A--A----G---GCCA--- 45 Query 104 TCTCGTCTTGAAACGCACCG---T-ATTCATGACTTCGTCGGAGCCACTCGACCTGGTTG 159 | ||| ||| |||||||||| | ||||||| |||||||||||||||||||||||||| Sbjct 46 TATCGGCTTAAAACGCACCGTATTCATTCATGGCTTCGTCGGAGCCACTCGACCTGGTTA 105 Query 160 TCACCGTCGTCTCTGCCAAGCACCTGAAGAATGTCAACTGGCGTAACGGTGACCTGAAAC 219 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 106 TCACCGTCGTCTCTGCCAAGCACCTGAAGAATGTCAACTGGCGTAACGGTGACCTGAAAC 165 Query 220 CCTACGTTGTTCTGTATCTTGACCAAGACCACCCTCTCTCCACCCGCTCCGATGATTCCT 279 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 166 CCTACGTTGTTCTGTATCTTGACCAAGACCACCCTCTCTCCACCCGCTCCGATGATTCCG 225 Query 280 CCTCCATCAAACCGGTGTGGAACGAGCGGATTACTCTTCCTCTCACCCGATCTGTCCACG 339 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 226 CCTCCATCAAACCGGTGTGGAACGAGCGGATTACTCTTCCTCTCACCCGATCCGTCCACG 285 Query 340 AATCGGTCCTCAACATCGAGGTTTTTCATTCCAATTCTTCGGATCTGGCGAAAACCCTCG 399 |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 286 AATCGGTCCTCAACATCGAGATTTTTCATTCCAATTCCTCGGATCTGGCGAAAACCCTCG 345 Query 400 TCGGATCGGTTAGGTTTCCTCTAGCTCGTTTGATTGACTCGGACGGGTCAATGATTCCGG 459 |||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| Sbjct 346 TCGGATCGGTTAGGTTTCCTCTTGCTCGCTTGATTGACTCGGATGGGTCAATGATTCCGG 405 Query 460 AATTGATCAACTCGCTCGAGCTGGTTCGTCCATCGGGTCGACCACAGGGGAAGATTCGTT 519 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | Sbjct 406 AATTGATCAACTCGCTCGAGCTGGTCCGTCCATCGGGTCGGCCACAGGGGAAGATTCGCT 465 Query 520 TGAAGCTCGCGATCAAAGACAGACCAATCCCTCCACCGCAGCATCCTCCGCCACGTCCTC 579 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 466 TGAAGCTCGCGATCAAAGAGAGACCTATCCCTCCACCGCAGCATCCTCCGCCACGTCCTC 525 Query 580 AATCTCAACCACTAGATTACTATTCTGCCCCTCAAGGAAACCATTATTACTCCCCTAGCc 639 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 526 AATCTCAACCACTAGATTACTATTCTGCCCCTCAAGGAAACCATTATTACTCCCCTA--- 582 Query 640 ctcctcctcctcctcctcctcAAGCACCGATCACCG-CTCCATCTCCTCAGCGTGACTAC 698 || ||||||||||||||||| ||||||| || |||| |||||||||||||||||| Sbjct 583 -----CC-CCTCCTCCTCCTCAAGCTCCGATCA-CGACTCCGTCTCCTCAGCGTGACTAC 635 Query 699 AGAGAATTCTCACAGTCACCGTCTCCGTCTCCTTACGCATTCACTGATCACTACTATTCC 758 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 636 AGAGAATTCTCACAGTCACCGTCTCCGTCTCCTTACGCATTCACTGATCATTACTATTCC 695 Query 759 GGGTATTATTATCCGCCTCCTCCACCACGTTCAATGTACGATCGTGCCTCCAATTACGGC 818 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 696 GGGTATTATTACCCGCCTCCTCCACCACGTTCAATGTACGATCGTGCCTCCAATTACGGC 755 Query 819 CTCCCAAGTGGCCCATCTGCTCCCGTTGATGCCTTCTCATCGATTGATCACAAGCAGCCT 878 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 756 CTCCCAAGTGGCCCATCTGCTCCCGTCGATGCCTTCTCATCGATTGATCACAAGCAGCCT 815 Query 879 CCTTTAGCTCCTCCTCGGTTTTCTAACTACGGTCCACCGCCTAGTGGGCCCTCAGCACCC 938 |||||||| |||||||||||||| || ||||||||||||||||||||||| ||||| ||| Sbjct 816 CCTTTAGCCCCTCCTCGGTTTTCCAATTACGGTCCACCGCCTAGTGGGCCATCAGCTCCC 875 Query 939 GTTGATGCCTTTCTGGTTACCGAGTACAAGCCACAAGCTCCACCTATGGGCTCGCGATTG 998 ||||||||||||| || || ||||||||||||||| ||||| ||||||||||| |||||| Sbjct 876 GTTGATGCCTTTCCGGGTAACGAGTACAAGCCACAGGCTCCTCCTATGGGCTCACGATTG 935 Query 999 TCTAGCTACGGAGTGCCTAATGGTCCATCGGCACCAGTCGATTACTCTCCTTATGATCAC 1058 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 936 TCTAGCTACGGAGTGCCTAATGGTCCATCGGCGCCAGTCGATTACTCTCCTTATGATCAC 995 Query 1059 AGGCAGTTGCAGAAGACGATGGGTGGATTGAGCTTAGAGGAAGAGAGAGCTGCTGCAGAG 1118 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 996 AGGCAGTTGCAGAAGACGATGGGTGGATTGAGCTTGGAAGAAGAGAGAGCTGCTGCAGAG 1055 Query 1119 AGGTCTGAGAGTGATTTCGGAGCTAGGCCAAACTACAGCTATGGCCGTGATTATCGCCGT 1178 |||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 1056 AGGTCTGAGAGTGACTTCGTAGCTAGGCCAAACTACAGCTATGGCCGCGATTATCGCCGT 1115 Query 1179 GAATGTTGAGGATGGCAAAAAGTTGTTGAATTTCACAAGTGTGCGGCGTTT-CTAAGGCT 1237 ||||||||||||||| ||||||||||||| ||||| ||||||| ||| ||| | |||||| Sbjct 1116 GAATGTTGAGGATGG-AAAAAGTTGTTGACTTTCATAAGTGTGTGGCCTTTAC-AAGGCT 1173 Query 1238 TTACTTATCATCAGATTT---------GTTGGTGTTAG-A-A-CACCAGGAAATGGCTGA 1285 |||||||||||||||||| ||||||||| | | | ||||| |||||||||| Sbjct 1174 TTACTTATCATCAGATTTACCATCCATGTTGGTGTTTGTAGATCACCAAGAAATGGCTGG 1233 Query 1286 TGACAAAA-TATGAATTTGGTGAAG----TATATGTT-ATGTCTATATGTATGTCTCGTT 1339 ||| |||| |||||||||||||||| ||||| || |||||||||||||| ||||||| Sbjct 1234 TGAAAAAAATATGAATTTGGTGAAGACAGTATATCTTTATGTCTATATGTATTTCTCGTT 1293 Query 1340 TGTGAATTGATTTGTTGCTTCTTTCTAGCTGATATTCGGTGTTACCCCTTCTGTACCTTT 1399 |||||||||||||| |||||||||||||| | | | |||||||||||| Sbjct 1294 TGTGAATTGATTTG---CTTCTTTCTAGCTG-----C--T---A----TTCTGTACCTTT 1336 Query 1400 GTACATGTTTCTAAAACATCTCTCATTTCTTTCCTTCATTCAGTTTCTTGAATC 1453 ||||||| ||||||||||||||| ||||||||||||| |||| |||||||||| Sbjct 1337 GTACATGCTTCTAAAACATCTCTGATTTCTTTCCTTCTTTCAACTTCTTGAATC 1390 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54354779615 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5