BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07320.1
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470751 jgi|Araly1|470751|fgenesh2_kg.1__705__AT1G07320.2 1591 0.0
> Ahg470751 jgi|Araly1|470751|fgenesh2_kg.1__705__AT1G07320.2
Length=1157
Score = 1591 bits (861), Expect = 0.0
Identities = 1064/1157 (92%), Gaps = 33/1157 (3%)
Strand=Plus/Plus
Query 14 TTCTTCTTCTTCTTCGTTGTGATAGGTCAGGTCAGGGAACAACAATGGCTTCTTCTGCAA 73
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1 TTCTTCTTCTTCTTCGTTGTGATAGGTCAGGTCAGTGAACAACAATGGCTTCCTCTGCAA 60
Query 74 CAGCACCAAATTCGCTATCTTTCTTCTCATCTTCTCTCTTTTTATCCTCCTCTCACCAAA 133
|||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 61 CAGCGCCAAATTCGCTATCTTTCTTCTCATCTTCTCTCTTTTTGTCTTCCTCTCACCAAA 120
Query 134 TCCCTAAAACCTACATTTCCGTTTCAAAACTCGGCTCCGGCAGAGTCTCGAAGCCGCTTT 193
|||||||||||||||||||||| | ||| |||||||||||||||||||||| ||||| |
Sbjct 121 TCCCTAAAACCTACATTTCCGTCACCAAATTCGGCTCCGGCAGAGTCTCGAAACCGCTCT 180
Query 194 CTGTCTCTTCCCAGCTAGCGACTCTACCGATTCTATCATTCGAAGGAGAGAAGGTCGGAG 253
| ||| | ||||||||||||||||| |||||| | |||||||| |||||||||||||| |
Sbjct 181 CCGTCGCATCCCAGCTAGCGACTCTGCCGATTATCTCATTCGAGGGAGAGAAGGTCGGGG 240
Query 254 AGACGTATCTAGACCTCAAAGCGGCGCCGGAGGATACCGCGCGTGCCGTTGTGCACCGAG 313
|||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||
Sbjct 241 AGACGTATCTAGACCTCAAAACGGCTCCGGAGGATACCGCGCGTGCTGTTGTGCACCGAG 300
Query 314 CCATCGTGACGGACCTGAATAACAAGCGGCGAGGTACTGCTTCCACACTGACTCGCGGTG 373
||||||||||||| || | ||||||||||||||||||||||| || |||||||||||||
Sbjct 301 CCATCGTGACGGATTTGCAGAACAAGCGGCGAGGTACTGCTTCGACGCTGACTCGCGGTG 360
Query 374 AAGTTCGTGGTGGTGGAATTAAACCTTACTCACAGAAGAAAACTGGCCACGCGAGGCGTG 433
||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||
Sbjct 361 AAGTTCGTGGTGGTGGAATTAAACCTTACGCGCAGAAGAAAACTGGTCACGCGAGGCGTG 420
Query 434 GATCTCAGAGAACACCGTTACGTCCCGGTGGAGGTGTGGTGTTTGGGCCAAGACCTAAGG 493
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 421 GATCTCAGAGAACACCGTTACGTCCCGGTGGAGGTGTGGTGTTCGGGCCCAGACCTAAGG 480
Query 494 ATTGGTCAATTAAAATCAATAGGAAGGAGAAGAAGCTAGCGATATCTACGGCGTTATCGA 553
||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||
Sbjct 481 ATTGGTCAATTAAAATCAATAGGAAGGAGAAGAAGCTGGCGATATCGACGGCGCTATCGA 540
Query 554 GTGCGGCATCTG-CGGAAGGTGGTGCGATAGTGGTGGAGGAATTTGGGGAGAAGTTTGAG 612
||||||| || | ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 541 GTGCGGCTTC-GTCGGAAGGTGGTGCGATAGTGGTGGAGGAATTTGGGGACAAGTTTGAG 599
Query 613 AAGCCCAAGACTAAAGATTTCTTAGCTGCGATGCAAAGGTGGGGATTGGATCCCAAGGAG 672
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 600 AAGCCCAAGACTAAAGATTTCTTAGCTGCGATGCAGAGGTGGGGATTGGATCCGAAGGAG 659
Query 673 AAAGCTATGTTCTTGATGATTGATGTGGATGAGAATGTGGCGAAATCGAGTAGGAACATT 732
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 660 AAAGCTATGTTTTTGATGATTGATGTGGATGAGAATGTGGCGAAATCGAGCAGGAACATT 719
Query 733 GGAACCTTGAGGATGTTGACGCCTAGGACACTGAATCTGTTTGATATTTTGAACGCTGAT 792
||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||| |||||
Sbjct 720 GGAACGTTGAGGATGTTGACGCCGAGGACGCTGAATCTGTTTGACATTTTGAACTCTGAT 779
Query 793 AAGCTTGTTCTGACTCCTGCGGCTGTGGAGTTCTTGAATGCGAGGTACGGTGTTGATGCG 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AAGCTTGTTCTGACTCCTGCGGCTGTGGAGTTCTTGAATGCGAGGTACGGTGTTGATGCG 839
Query 853 GTGGAGGAAGAAGATGACGATGAAGATGAGACGGAAGGGTCAGAGGAAGCTTAAGAATGA 912
||||||||||||||||||||||||||||| ||||||| || | ||||||||||| ||
Sbjct 840 GTGGAGGAAGAAGATGACGATGAAGATGACACGGAAG----AG-G-AAGCTTAAGAAAGA 893
Query 913 GTAGCACCCGTAGTTCCAATTGCTTCAAGTGTGGCTTAATTATGAGTTTAATCTTGAGTA 972
|||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 894 GTAGCAGCCGTAGTTCCAATTGCTTCAAGTGTGGCTTAAT------------CTTGAGTA 941
Query 973 CATCTTCTCACTCTCCTTGATGAGGTCTTCTCTTTCCTTTTTGTGTCACAACAAGAGAAA 1032
|||||||| | || |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 942 CATCTTCTTATTCGCCTTGATGAGGTCTTCTCTTTCCTTTTTGTGTAACAACAAGAGAAA 1001
Query 1033 TGTGTATTTACTTTTAGAGTTTTTCTTAAGAGATCATCCTCAATTTCTTGTCATACTGAT 1092
|||||||||| ||||||||||||| | ||||||||||||||| ||||| |||||||||||
Sbjct 1002 TGTGTATTTAATTTTAGAGTTTTT-T-AAGAGATCATCCTCAGTTTCT-GTCATACTGAT 1058
Query 1093 TTTGTGTCCAACTCTCAATGAAGGAGTAAGGAGTGAAATTAGATATCATGAGTAACGTTG 1152
|||||||||||||||||||| | ||| | | | |||||||||||||| |||||||
Sbjct 1059 TTTGTGTCCAACTCTCAATG--G-AGTCA--A---A--TTAGATATCATGAGAAACGTTG 1108
Query 1153 ATTGTGTGTGTATCAGT 1169
||||| |||| ||||||
Sbjct 1109 ATTGTTTGTGCATCAGT 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46548081657
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5