BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07350.1
Length=1456
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470756 jgi|Araly1|470756|fgenesh2_kg.1__710__AT1G07350.1 1600 0.0
> Ahg470756 jgi|Araly1|470756|fgenesh2_kg.1__710__AT1G07350.1
Length=1223
Score = 1600 bits (866), Expect = 0.0
Identities = 1126/1245 (90%), Gaps = 44/1245 (4%)
Strand=Plus/Plus
Query 5 GGAAACGTGAAATTCATTTTACTCCGGTGGGTCGTCAGGTGCAGAGAGTTCTGG-A-AT- 61
|||||||||||||||||||| |||||| || ||||||||||||||||||||| | ||
Sbjct 10 GGAAACGTGAAATTCATTTTGTTCCGGT-GG--GTCAGGTGCAGAGAGTTCTGGAACATC 66
Query 62 ATCCATTGCGCTTGGAGAATCGTTCGCCGATGTCTTACTCAAGAAGGTCAAGATACTCTC 121
|||||||| || | || | | | |||||||||||||||||||||||||||||||
Sbjct 67 ATCCATTGAGC-T--AG-A--G-GAAAC-ATGTCTTACTCAAGAAGGTCAAGATACTCTC 118
Query 122 CTTCACTATCTCCTTATGACAAGCGTCGTGGAAGGTCTGTGTCAAGGTCATTGTCTAGAA 181
| || || |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 119 CATCGCTGTCTCCTTATGACAAGCGTCGTGGAAGGTCTGTCTCAAGGTCATTGTCTAGAA 178
Query 182 GCCCGACGAGGAGTGTCTCAAGCGATGCTGAGAATCCTGGTAACAGTTTATATGTAACTG 241
||| | | |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GCCGGTCAAGGAGTTTCTCAAGCGATGCTGAGAATCCTGGTAACAGTTTATATGTAACTG 238
Query 242 GATTGTCTCACCGGGTTACTGAAAGAGATCTGGAGGATCATTTCGCTAAAGAAGGAAAGG 301
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 239 GATTGTCTCACCGGGTAACTGAAAGAGATCTCGAGGATCATTTCGCTAAAGAAGGAAAGG 298
Query 302 TAACTGATGTTCACCTTGTCCTGGACCCATGGACTAGAGAATCTCGCGGATTTGGTTTTA 361
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TAACGGATGTTCACCTTGTCCTGGACCCATGGACTAGAGAATCTCGCGGATTTGGTTTTA 358
Query 362 TCTCTATGAAAAGTGTTGGTGATGCTAACCGTTGCATCAGATCTCTAGATCACTCTGTTC 421
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 359 TCTCTATGGAAAGTGTTGGTGATGCTAACCGTTGCATCAGATATCTAGATCACTCTGTTC 418
Query 422 TGCAGGGCCGCGTCATCACTGTTGAGAAGGCAAGACG-TCGTAGAGGACGTACTCCAACT 480
|||||||| | ||||| || |||||||||||||| || | |||||||||||||||| |||
Sbjct 419 TGCAGGGCAGAGTCATTACAGTTGAGAAGGCAAGGCGCT-GTAGAGGACGTACTCCGACT 477
Query 481 CCAGGAAAGTACTTGGGGCTGAGAACTGCTCGAGGACGACATAAGTCTCCTAGCTACTCT 540
|| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 478 CCGGGAAAGTACTTGGGGCTGAGAACCGCTCGAGGACGCCATAAGTCTCCTAGCTACTCT 537
Query 541 CCCCGCAGGTCTGTTAGCTGCTCTCGTAGTCGTAGTCGAAGCTACTCATCTGATCGGGGC 600
||| |||||||||||||| ||||||||||||| | | ||||||||||||||||| ||
Sbjct 538 CCCTGCAGGTCTGTTAGCAGCTCTCGTAGTCG-A----A-GCTACTCATCTGATCGGAGC 591
Query 601 AGATCTTATTCTCCAAGCTATGGGAGAAGAGGAAGGTCATCCTCGTACTCACCCTTCTAT 660
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||
Sbjct 592 AGATCTTATTCTCCAAGCTATGGGAGGAGAGGAAGGTCATCCTCGTCCTCACCCTTTTAT 651
Query 661 CGACGACGCAGATTCT-ACTCTCCTTCGAGATCTCCTTCACCTGATGATCGTTACAACAG 719
| ||| |||||| || ||||||||||||||||||| || || | |||||||||| ||||
Sbjct 652 AGGCGAGGCAGAT-CTTACTCTCCTTCGAGATCTCCATCGCCCGTTGATCGTTACTACAG 710
Query 720 GAGACGCGACAGATCATACTCACCTTACTACAGGCGGAGGGACCGGTCCAG----A--TC 773
||||||||| |||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 711 GAGACGCGAGAGATCATACTCACCTTACTACAGGCGAAGGGACCGGTCCAGGTCCAGATC 770
Query 774 CTACTCACGTAACTGTAGAGCACGGGACAGATCACCTTACTACATG-CGGAGGTACAGGT 832
||||| | | ||| ||||||||||||||||||||||||||||| | | |||||||||||
Sbjct 771 CTACTTGCCTTACTATAGAGCACGGGACAGATCACCTTACTACA-GACAGAGGTACAGGT 829
Query 833 CCAGATCCAGGTCATACTCGCCTCGCTACAGAGCACGTGACCGATCATGCTCACCCTACT 892
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 830 CCAGATCCAGGTCATACTCGCCTCGCTACAGAGCACGTGACAGATCATACTCACCCTACT 889
Query 893 ACAGGGGAAGAGACCGGTCTTATTCACCCCACTACCAAGGGAGAGACAGATCCTACTCAC 952
|||| |||||||||||||| ||||| || ||||||||||||||||||| ||||||||||
Sbjct 890 ACAGAGGAAGAGACCGGTCCTATTCGCCTTACTACCAAGGGAGAGACAGGTCCTACTCAC 949
Query 953 CTGAAAGTCGTTACTACAGAAGGCACAGGTCGGTATCGGGAAGCGTAAGCCCTGG-AGGG 1011
||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| |||
Sbjct 950 CTGAAAGTCGTCACTACAGAAGGTACAGGTCGGTATCGAGAAGCGTAAGCCCTGGGAGG- 1008
Query 1012 AGAAGCATGTCACGTAGCATATCCCCAAGGAAGGGAAGGAAAGAGAGCAGAAGCAAGTCT 1071
|||||||||||| | |||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1009 AGAAGCATGTCATGGAGCACATCCCCAAAGAAGGGAAGGAAAGAGAGCAGAAGCAAGTCT 1068
Query 1072 CGGAGGCACGACAGGCAATCTTCAATGTGTCATTCGAGGAGCGCAAGATCAAGCACCTCC 1131
|| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1069 CGCAGGCGCGACAGGCAATCTTCAATGAGTCATTCGAGGAGCGCAAGATCAAGCACCTCC 1128
Query 1132 AGATCCGTCAGCCCATAACAGTCTCTACTTACTTGAAGTTGACATCAATCACTCACGTCT 1191
||||||||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct 1129 AGATCCGTCAGCCCATAACAGTCTCTA-------G---TTGACATCAATCGCTCACGTCT 1178
Query 1192 GTTGTTGTATTAAGCATTTTGGGACTTGTCTATTCCTTGTATTTG 1236
||||||||||||| |||||||||| || |||||||||||||||
Sbjct 1179 GTTGTTGTATTAAATATTTTGGGACACGTGTATTCCTTGTATTTG 1223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54469050350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5