BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G07430.1 Length=1817 Score E Sequences producing significant alignments: (Bits) Value Ahg470764 jgi|Araly1|470764|fgenesh2_kg.1__718__AT1G07430.1 2026 0.0 Ahg900701 jgi|Araly1|900701|Al_scaffold_0004_1351 148 1e-34 > Ahg470764 jgi|Araly1|470764|fgenesh2_kg.1__718__AT1G07430.1 Length=1706 Score = 2026 bits (1097), Expect = 0.0 Identities = 1499/1681 (89%), Gaps = 76/1681 (5%) Strand=Plus/Plus Query 1 GATATTTATTCAACTGCGTGGTATAACCaaaaaaaaaaGAAACACTATTCGACTCttttt 60 ||||||||||||| ||| |||||||||| || |||||||||||||||| || | Sbjct 1 GATATTTATTCAATTGCATGGTATAACC--------AA-AAACACTATTCGACTC-TTCT 50 Query 61 ttgtttttGTAATAAACATAAAATAAATTTTGGAGAGAGATATTTCGTCGGAAATTAATT 120 || ||||||||||||| |||||||||| | ||||| ||||||||| |||||||||||| Sbjct 51 TT-TTTTTGTAATAAAAATAAAATAAAAATCGGAGACAGATATTTCACCGGAAATTAATT 109 Query 121 GACGTTCAAAAGATTCGTTACCGGAATATTTAGTAGAGGCGGCGATCGAGTTATGGCGGA 180 |||| |||| |||||||||||||||| || |||| || | |||||||||||||||||| Sbjct 110 GACGATCAACAGATTCGTTACCGGAAAATCTAGT---GGAGACGATCGAGTTATGGCGGA 166 Query 181 TATTTGTTATGAAGACGAGACGTCGGCTTGTGAATCAAGACCGTTGTGGTCTAGCCGGAA 240 ||||||||| |||||||||||||| ||||||||||| ||||||| ||||||||||||||| Sbjct 167 TATTTGTTACGAAGACGAGACGTCTGCTTGTGAATCGAGACCGTCGTGGTCTAGCCGGAA 226 Query 241 GTGGAGGATCGGTGTCCAGCGATTCAGGATGTCTCCGTCGGAGATGAATCCCACGGCGTC 300 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 227 GTGGAGGATCGGTGTTCAGCGATTCAGGATGTCTCCGTCGGAGATGAATCCCACGGCTTC 286 Query 301 GACGAC---GGAGGAGGAGGAT---AAATCTGAAGGGATTTATAATAAGCGAAATAAACA 354 |||| | ||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 287 GACGGCGGAGGAGGAGGAGGATAAGAAATCTGAGGGGATTTATAATAAGCGAAATAAACA 346 Query 355 AGAAGAGTACGATTTTATGAACTGTGCATCGTCGTCACCTTCTCAAAGCTCTCCTGAAGA 414 |||||||||||||||||||||||||||||| || ||||| | | | | || || Sbjct 347 AGAAGAGTACGATTTTATGAACTGTGCATCATCATCACC-AC-C--A-C-CTTCT----- 395 Query 415 AGAGAGTGTATCACTTGAAGACAGTGACGTCTCTATCTCCGATGGAAATTCATCGGTTAA 474 |||| | || | |||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 396 -CAGAG-CTCTC-C-TGAAGAGAGTGACGTCTCCGTCTCCGATGGAAATTCATCGGTTAA 451 Query 475 TGATGTTGCAGTTATTCCGT-CGAAGAAGACGGTTAAAGAGACGGATCTGAGGCCGAGAT 533 |||| || || ||||||| | | ||||||||||||||||||||||||||||||||||||| Sbjct 452 TGATATTACACTTATTCC-TGCTAAGAAGACGGTTAAAGAGACGGATCTGAGGCCGAGAT 510 Query 534 ACGGCGTCGCATCGGTGTGCGGGAGAAGAAGAGATATGGAAGATGCGGTTGCG-TTACAT 592 ||||| ||||||||||||||||||||||||||||||||||||||||||| ||| || ||| Sbjct 511 ACGGCTTCGCATCGGTGTGCGGGAGAAGAAGAGATATGGAAGATGCGGTGGCGATT-CAT 569 Query 593 CCGTCTTTTGTACGGAAACAAACGGAGTTTTCTCGAACAAGATGGCACTATTTTGGTGTT 652 |||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct 570 CCGTATTTTGTACGGAGACAAACGGAGTTTTCTCGAACAAGATGGCATTATTTTGGTGTT 629 Query 653 TACGACGGCCATGGCTGTTCTCACGTTGCGGCT-AGGTGTAAAGAGAGACTTCACGAGTT 711 ||||||||||| ||||||||||||||||| | | |||||||||||||||||||||||||| Sbjct 630 TACGACGGCCACGGCTGTTCTCACGTTGC-GTTGAGGTGTAAAGAGAGACTTCACGAGTT 688 Query 712 AGTGCAAGAAGAAGCGT-TGTCGGATAAGAAAGAAGAATGGAAGAAGATGATGGAGCGTA 770 ||||||||||||||| | | |||||||||||||||||||||||||||| ||||||||||| Sbjct 689 AGTGCAAGAAGAAGC-TCTCTCGGATAAGAAAGAAGAATGGAAGAAGACGATGGAGCGTA 747 Query 771 GCTTCACACG-TATGGACAAAGAGGTTGTTCGTTGGGGTGAAACTGTGATGAGTGCTAAT 829 ||||||| || | ||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 748 GCTTCACGCGCT-TGGACAAGGAGGTTGTTCGTTGGGGTGAAACTGTGATGAGTGCTAAT 806 Query 830 TGTAGGTGTGAGCTTCAAACGCCGGACTGTGACGCTGTTGGATCCACCGCCGTTGTCTCC 889 || || |||||||||||||| || ||||||||||| |||||||||||||| || || ||| Sbjct 807 TGCAGATGTGAGCTTCAAACTCCTGACTGTGACGCCGTTGGATCCACCGCAGTGGTTTCC 866 Query 890 GTCATTACGCCGGAGAAGATCATTGTTGCGAATTGCGGTGACTCAAGAGCAGTTCTTTGT 949 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 867 GTCATTACGCCGGAGAAGATTATTGTTGCGAATTGTGGTGACTCAAGAGCAGTTCTTTGT 926 Query 950 AGGAATGGTAAAGCAGTACCTCTTTCTACAGATCATAAGCCTGATCGTCCGGATGAGCTG 1009 || |||||||||||||| |||||||| | |||||| ||||| |||||||||||||||||| Sbjct 927 AGAAATGGTAAAGCAGTGCCTCTTTCCATAGATCACAAGCCGGATCGTCCGGATGAGCTG 986 Query 1010 GATCGAATCCAAGAAGCAGGAGGACGAGTGATATACTGGGACGGTGCAAGAGTCTTAGGC 1069 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 987 GATCGAATCCAAGAAGCAGGAGGACGAGTGATATACTGGGACGGTGCAAGAGTCTTAGGC 1046 Query 1070 GTTTTAGCCATGTCACGAGCCATAGGAGACAATTATTTAAAACCGTACGTCACTTCGGAG 1129 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || Sbjct 1047 GTTTTAGCCATGTCACGAGCCATAGGAGACAACTATTTAAAACCGTACGTGACTTCCGAA 1106 Query 1130 CCGGAAGTGACGGTTACGGATCGGACTGAGGAAGATGAGTTTCTGATTCTAGCGA-CGGA 1188 ||||||||||| || |||||||||||||||||||||||||||||||||||||| | || | Sbjct 1107 CCGGAAGTGACCGTGACGGATCGGACTGAGGAAGATGAGTTTCTGATTCTAGCAAGCG-A 1165 Query 1189 CGGGCTATGGGACGTAGTGACGAACGAGGCAGCGTGTACGATGGTGCGCATGTGTCT-CA 1247 |||| |||||||||| ||||| |||||||| |||||| ||||||| | |||||| || || Sbjct 1166 CGGGTTATGGGACGTTGTGACAAACGAGGCGGCGTGTTCGATGGTTCACATGTG-CTTCA 1224 Query 1248 ACAGAAAAAGTGGTCGTGGAAGACGGCgaggagaaacacagactccggggaggaggagtg 1307 ||||||||||||| | |||||||||||||||||||| || || | | | | | | Sbjct 1225 ACAGAAAAAGTGGACACGGAAGACGGCGAGGAGAAACTCAAACACAG---ACTCCG-G-G 1279 Query 1308 aagaagaagggaaagaagaagaggagaaggtggtggggtcaagaaagaacgggaagagag 1367 || || || ||| ||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 1280 AACCAGGAGTGAA-GAAGAGGAGGAGAAGGTGGTGGGGTCAAGAAAGAACGGGAAGAAAG 1338 Query 1368 gagagaTCACGGACAAAGCATGTACGGAGGCGTCAGTATTGCTGACGAAGCTGGCGTTGG 1427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1339 GAGAGATCACGGACAAAGCATGTACGGAGGCGTCAGTATTGCTGACGAAGCTGGCGTTGG 1398 Query 1428 CAAAACACAGTAGTGACAACGTAAGCGTCGTCGTTATTGATCTCAGAAGAAGAAGAAAGA 1487 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1399 CAAAACACAGTAGTGACAACGTAAGCGTCGTCGTTATTAATCTCAGAAGAAGAAGAAAGA 1458 Query 1488 GACACGTTGCTTGACACTAATCTCCTCATCACTCTTACTCCACCGTTTTTTGTGTTGTTT 1547 |||||||||||||||||||||||| ||||||||||||||||| | |||||||| |||||| Sbjct 1459 GACACGTTGCTTGACACTAATCTCATCATCACTCTTACTCCAAC-TTTTTTGT-TTGTTT 1516 Query 1548 AAAATGATTCTTTTACCTTGGGACGAAGGTAGCTCAAATCTTTGAACCCaaaagagagaa 1607 |||||||||||||| |||| | | | | |||||||||||||||||||||| Sbjct 1517 AAAATGATTCTTTTTCCTT----C-A------C--A--TCTTTGAACCCAAAAGAGAGAA 1561 Query 1608 aaaaaaa-gcattaggtctaaaaaaaaaaC-CCCGGTTTACTGAAAGCGGTTAAACCGGG 1665 ||||||| | | | | ||||||||||| ||||||||| ||||||||||||||||||| Sbjct 1562 AAAAAAATGGGTGAA-T-TAAAAAAAAAATACCCGGTTTATTGAAAGCGGTTAAACCGGG 1619 Query 1666 T 1666 | Sbjct 1620 T 1620 > Ahg900701 jgi|Araly1|900701|Al_scaffold_0004_1351 Length=1146 Score = 148 bits (80), Expect = 1e-34 Identities = 101/111 (91%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 1372 gaTCACGGACAAAGCATGTACGGAGGCGTCAGTATTGCTGACGAAGCTGGCGTTGGCAAA 1431 |||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1017 GATCTCGGACAAGGCATGTACGGAAGCGTCAGTATTGCTGACGAAGCTGGCGTTGGCAAG 1076 Query 1432 ACACAGTAGTGACAACGTAAGCGTCGTCGTTATTGATCTCAGAAGAAGAAG 1482 ||||||||||||||||| || ||||| || |||||||||||||||| ||| Sbjct 1077 GCACAGTAGTGACAACGTCAGTGTCGTAGTGATTGATCTCAGAAGAA-AAG 1126 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68219628795 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5