BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07450.1
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470767 jgi|Araly1|470767|fgenesh2_kg.1__721__AT1G07450.1 1219 0.0
Ahg481846 jgi|Araly1|481846|fgenesh2_kg.4__906__AT2G29310.1 270 1e-71
Ahg481843 jgi|Araly1|481843|fgenesh2_kg.4__903__AT2G29290.2 147 2e-34
> Ahg470767 jgi|Araly1|470767|fgenesh2_kg.1__721__AT1G07450.1
Length=900
Score = 1219 bits (660), Expect = 0.0
Identities = 849/934 (91%), Gaps = 38/934 (4%)
Strand=Plus/Plus
Query 2 CCAACCATTAAGCTTATCATTCTAACTGATTATACTTGTGGCTATAGTGACTAAGTGTCG 61
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
Sbjct 1 CCAACCATTAAGCTTATCATTCTAACTGATTATATTTGTGGCTATAGTGACTAA--AT-G 57
Query 62 Tcacacacacaa--cacaacaATGGATATTAACAGGTGGAGTCTTCAAGGTATGACTGCT 119
|||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 58 TCACACACACAAGTCACAACGATGGATATTAACAGGTGGAGTCTTCAAGGAATGACTGCT 117
Query 120 CTTGTAACCGGTGGATCAAAGGGAATTGGGTATGCAATAGTGGAGGAACTTGTAGGCTTT 179
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 118 CTTGTAACCGGTGGAGCAAAGGGAATTGGGTATGCGGTAGTGGAGGAACTTGTAGGCTTT 177
Query 180 GGTGCAAGAGTTCACATCTGTGACATAGACGAAACTCTGCTAAACGAATGCTTAAGTGGA 239
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
Sbjct 178 GGTGCAAGAGTTCACATCTGTGACAGAGACCAAACTCTGCTAAACGAATGCTTAAGTGAA 237
Query 240 TGGCATGCAAAAGGGTTTGAAGTGAGTGGTTCAATCTGTGATGTTTCCTCTCGACCTCAG 299
||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 238 TGGCAAGCAAAAGGGTTTGAAGTCAGTGGTTCGGTCTGTGATGTTTCCTCTCGACCTCAG 297
Query 300 AGAGTGCAATTGATGCAGACTGTTTCTTCTCTATTTGGTGCCAAACTCAACATCCTTATA 359
|||| ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 298 AGAGAGCAATTGATACAGACTGTTTCTTCTCTATTCGGTGCCAAACTCAACATTCTTATA 357
Query 360 AACAATGTTGGCAAGTACATATTAAAGCCAACTTTAGAAAGTACAGCTGAAGATTTCTCA 419
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 358 AACAATGTTGGCAAGTATATATTAAAGCCAACTTTAGAAAGTACAGTTGAAGATTTCTCA 417
Query 420 AGTTTAATGGCTACCAATTTGGAATCTGCTTACTACATCTCCCAATTGGCACATCCTTTA 479
||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct 418 AGTTTAATGGCTACCAATTTGGAATCTGCTTACCATATCTCCCAATTGGCACATCCGTTA 477
Query 480 CTTAAAGCCTCGGGAAATGGGAATATCGTGTTTATTTCCTCGGTAACGGGGGTTGTCTCT 539
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 478 CTTAAAGCCTCGGGATATGGGAATATCGTGTTTATTTCCTCGGTATCGGGGGTTGTCTCT 537
Query 540 GGCACATC-TACCATATATGGTGTAACAAAAGGAGCCTTGAATCAACTGGCAAGAGATTT 598
|||| ||| | |||||||||||| ||||||||||||||| ||||||||||||| | | ||
Sbjct 538 GGCATATCCT-CCATATATGGTGCAACAAAAGGAGCCTTAAATCAACTGGCAAAAAACTT 596
Query 599 GGCGTGTGAATGGGCCAGTGACAACATAAGGGCTAACTCTGTAGCTCCTTGGGTCACTGC 658
||||||||||||||| |||||||||||||||||||||||||||||||||||| | | | |
Sbjct 597 GGCGTGTGAATGGGCTAGTGACAACATAAGGGCTAACTCTGTAGCTCCTTGG-T-A-T-C 652
Query 659 AACTTCTCTTGTCCAAAAATATCTTGAAGACGAGATATTTGCGGAAGCTATG-TTCTCAA 717
|| | || | | || || | || || ||||||||||| || ||||
Sbjct 653 ---TT-----G---AAGA----C--GA-GA--A-AT-TT-GCGGAAGCTATACTT-TCAA 688
Query 718 GAACCCCATTAGGACGTGCATGTGAGCCACGTGAGGTTGCGTCGCTGGTGACATTTCTCT 777
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
Sbjct 689 GAACCCCATTAGGACGTGTATGTGAGCCACGTGAGGTTGCGTCGTTGGTGACATTTCTTT 748
Query 778 GTCTCCCTGCAGCTTCTTATATAACAGGACAAACCATTTGTATTGATGGTGGTTTCACTG 837
|||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 749 GTCTCCCTGCGGCTTCTTATATAACAGGACAAACCATTTGTATCGATGGAGGTTTCACTG 808
Query 838 TTAATGGATTCTCCTATAAGCCATAGGGTCAAACCCTAGAAAACACTTCTACAATTAACA 897
||||||| ||||||||||||||||||| |||||||||||||| ||||| || |||||||
Sbjct 809 TTAATGGCTTCTCCTATAAGCCATAGGCTCAAACCCTAGAAA-CACTTGTATAATTAACT 867
Query 898 ATTTCTATGATGTATGAACATTTGGTCAAGTTTT 931
|| ||||||||||||||||||| ||||||||||
Sbjct 868 CTT-CTATGATGTATGAACATTTAGTCAAGTTTT 900
> Ahg481846 jgi|Araly1|481846|fgenesh2_kg.4__906__AT2G29310.1
Length=809
Score = 270 bits (146), Expect = 1e-71
Identities = 605/818 (74%), Gaps = 66/818 (8%)
Strand=Plus/Plus
Query 80 AATGGATATTAACAGGTGGAGTCTTCAAGGTATGACTGCTCTTGTAACCGGTGGATCAAA 139
|||||||| || || |||||||||||| |||||||||||||||| ||||||||| | |
Sbjct 8 AATGGATA--AA-AGATGGAGTCTTCAATGTATGACTGCTCTTGTGACCGGTGGAGC-CA 63
Query 140 G-GGAATTGGGTATGCAATAGTGGAGGAACTT-G-TAGGCTTTGGTGCAAGAGTTCACAT 196
| |||||||| ||||| ||||| |||| | || | || | ||||| || ||| | || |
Sbjct 64 GCGGAATTGGTTATGCCATAGTAGAGG-AGTTAGCTA-GTTTTGGAGCTAGAATCCATGT 121
Query 197 CTGTGACATAGAC-GAAACTCTGCT-AAACGAATGCTTAAGTGGATGGCATGCA-AAAGG 253
|||||||| | |||||||| || || | || | ||||||| |||| | | |||||
Sbjct 122 ATGTGACAT-CTCTGAAACTCTTCTCAATC-AAAGTTTAAGTGAATGGGA-AAAGAAAGG 178
Query 254 GTTTGAAGTGAGTGGTTCAATCTGTGATGTTTCCTCTCGACCTC-AGAGAGTGCAATTGA 312
|||| |||||||||||||| |||||||||| | ||||| || | | |||| || |||
Sbjct 179 GTTTCAAGTGAGTGGTTCAGTCTGTGATGTAACTTCTCGTCC-CGATAGAGAAAAACTGA 237
Query 313 TGCAGACTGTTTCTTCTCTATTTGGTGCCAAACTCAACATCCTTATAAACAATGTTGGCA 372
|||| || ||||| || || |||| || |||||||||||| ||| |||||||||||||
Sbjct 238 TGCAAACCGTTTCCTCGCTGTTTGATGGCAAACTCAACATTCTTGTAAACAATGTTGG-- 295
Query 373 AGTACAT--ATTAAAGCCAACTTTAGAA-AGTACAGCTGAAGATTTCTCAAGTTT-A-AT 427
|||| | |||| ||| ||| | | || || |||||||| ||| | ||
Sbjct 296 TGTACTTCGCGGGAAGCTAACAACGGAATA-TGTGGCAGATGATTTCTC--TTTTCACAT 352
Query 428 GGCTACCAATTTGGAATCTGCTTACTACA-TCT-CCCA-ATTGGCACATCCTTTACTTAA 484
| || ||||||||| |||||| | || | | ||| || |||||||| | |||||
Sbjct 353 CTCAACAAATTTGGAAGCTGCTT--TCCATTTTAGCCAGCTT-TCACATCCTCT-CTTAA 408
Query 485 A-GCCTCGGGAAATGGGAA-TATCGTGTTTATTTCCTCGGTAACGGGGGTTGTCTC--TG 540
| || || || | | |||| ||||| ||||| ||||| || || ||| |||| || |
Sbjct 409 AGGCTTCAGG-ATTTGGAAGCATCGTCTTTATGTCCTCTGTCACAGGGATTGTATCAGTT 467
Query 541 GCACATCT--A-CCATATATGGTGTAACAAAAGGAGCCTTGAATCAACTGGCAAGAGATT 597
| | || | | |||| |||||| |||| |||||||| |||||||| | | ||| |||
Sbjct 468 G-A-ATGTGGATCCATTTATGGTCTAACGAAAGGAGCTTTGAATCAGTTAACTAGAAATT 525
Query 598 TGGCGTGTGAATGGGCCAGTGACAACATAAGGGCTAACT-CTGTAGCTCCT--TG-GGTC 653
|||| ||||||||||| | || |||||| || || | |||| || ||| || |||
Sbjct 526 TGGCATGTGAATGGGCAAAAGATGGCATAAGAGCCAA-TGCTGTTGCACCTAATGTTGTC 584
Query 654 ACTGCAACTTCTCTTGTC-CAAAAATATCTTGAAGACG-AGATATTTGCGGAAGCTA-TG 710
| | ||| ||| |||| ||| ||||| || |||| | | || || || | ||
Sbjct 585 A-AG--ACTCCTC-TGTCTCAATCTTATCTCGAGGACGTCGGT-TTCAAGG-AGGGATTG 638
Query 711 TTCTCAAGAACCCCA-TTAGGACGTGCAT-GTGAGCCACGTGAGGTTGCGTCGCTGGT-G 767
|| ||||| ||| || || |||| | | |||||| ||| ||||| || || || |
Sbjct 639 TTGAGTAGAACTCCACTT-GGTCGTG-TTGGAGAGCCAAATGAAGTTGCATCACTAGTGG 696
Query 768 ACATTTC-TCTGTCTCCCTGCAGCTTCTTATATAACAGGACAAACCATTTGTATTGATGG 826
| ||| | ||||| ||||||||||||||||| || || ||||||||||||||||||||
Sbjct 697 TC--TTCTTGTGTCTACCTGCAGCTTCTTATATTACTGGTCAAACCATTTGTATTGATGG 754
Query 827 TGGTTTCACTGTTAATGGATTCTCCTATAAGCCATAGG 864
|||||||||||||||||||||||||||| ||||| |||
Sbjct 755 TGGTTTCACTGTTAATGGATTCTCCTATCAGCCACAGG 792
> Ahg481843 jgi|Araly1|481843|fgenesh2_kg.4__903__AT2G29290.2
Length=1329
Score = 147 bits (79), Expect = 2e-34
Identities = 219/286 (77%), Gaps = 12/286 (4%)
Strand=Plus/Plus
Query 81 ATGGATATTAACAGGTGGAGTCTTCAAGGTATGACTGCTCTTGTAACCGGTGGATCAA-A 139
||||||| | ||| ||||||||||||||||||||||||||||| || |||||| | |
Sbjct 33 ATGGATAACAGCAGATGGAGTCTTCAAGGTATGACTGCTCTTGTGACTGGTGGAGCGGGA 92
Query 140 GGGAATTGGGTATGCAATAGTGGAGGAACTTGTAGGCTTTGGTGC-AAGAGTTCACATCT 198
|| ||| ||| |||| ||||| ||||| || | || ||||| || || ||| || | |
Sbjct 93 GG-AATCGGGCATGCCATAGTAGAGGAGCTAGCCGGTTTTGGGGCCAA-AGTCCATGTAT 150
Query 199 GTGACATAGAC-GAAACTCTGCTAAACGAATGCTTAAGTGGATGGCATGCA-AAAGGGTT 256
| |||||| | ||||| ||||| ||| || | ||||| | |||| | | ||||||||
Sbjct 151 GCGACATAT-CTGAAACACTGCTCAACCAAAGTTTAAGAGAATGGGAAA-AGAAAGGGTT 208
Query 257 TGAAGTGAGTGGTTCAATCTGTGATGTTTCCTCTCGA-CCTCAGAGAGTG-CAATTGATG 314
| |||||||||||||||||||| |||| |||||||| || |||||| || | |||
Sbjct 209 TCAAGTGAGTGGTTCAATCTGTAATGTATCCTCTCGTTCCG-AGAGAGAAACACTC-ATG 266
Query 315 CAGACTGTTTCTTCTCTATTTGGTGCCAAACTCAACATCCTTATAA 360
|| || || || || || |||| || |||||| ||||| ||| |||
Sbjct 267 CAAACCGTCTCCTCGCTGTTTGATGGCAAACTGAACATTCTTGTAA 312
Score = 124 bits (67), Expect = 9e-28
Identities = 415/578 (72%), Gaps = 44/578 (8%)
Strand=Plus/Plus
Query 80 AATGGATATTAACAGGTGGAGTCTTCAAGGTATGACTGCTCTTGTAACCGGTGG-A-TCA 137
|||||||| || || ||||||||||||||||||||||||||||| |||||||| | | |
Sbjct 500 AATGGATA--AA-AGATGGAGTCTTCAAGGTATGACTGCTCTTGTGACCGGTGGCACT-A 555
Query 138 AAGGGAATTGGGTATGCAATAGTGGAGGAACT-TGTAGGCTTTGGTGCAAGAGTTCACAT 196
|||| ||| ||| | || | ||||||||||| | | ||| || |||| ||| ||||
Sbjct 556 AAGG-AATCGGGGAAGCTGTGGTGGAGGAACTATCAAT-CTTGGGAGCAATAGTCCACA- 612
Query 197 C-TGTGACATAGACGAAACTCTGCTA-AACGAATGCTTAAGTGGATGGCATGCAAAAGGG 254
| |||| || |||||| |||| ||| || ||| | || || |||||| | |||||||
Sbjct 613 CATGTGCCAGAGACGAGACTCAGCTTCAA-GAACGTTTGCTTGAATGGCAAGAAAAAGGG 671
Query 255 TTTGAAGTGAGTGGTTCAATCTGTGATGTTTCCTCT-CG--ACCT-CAGAGAGTGCAATT 310
||| | || | ||| |||| || ||||| ||| || ||| | ||||| || |
Sbjct 672 TTTCAGGTCACCACTTCTGTCTGCGACGTTTC-TCTGCGTGACCAAC-GAGAGA--AACT 727
Query 311 GAT-GCAGACTGTTTCTTCTCTATTTGGTGCCAAACTCAACATCCTTATAAACAATGTTG 369
|| | | || ||||| ||||| || | |||||||| ||||| ||||||||| |
Sbjct 728 CATCGAA-ACCGTTTCCTCTCTCTTCCAAGGAAAACTCAATATCCTCGTAAACAATGCAG 786
Query 370 GCAA-GTACATA-TTAAAGCCAACTTTAGAA-AGTACAGCTGAAGATTTCTCAAGTTTA- 425
| || || ||| |||| ||| || ||| | |||||| ||||| ||||| |||||
Sbjct 787 G-AACGTTTATACTTAA-GCCGACCACAGAGTA-TACAGCAGAAGAATTCTC--GTTTAT 841
Query 426 A-TGGCTACCAATTTGGAATCTGCTTACTACATCTCCCAATTGGCACATCCTTTACTT-A 483
| ||||||| ||| | || || |||| | | || || || | || || ||||| || |
Sbjct 842 AATGGCTACAAATCTCGAGTCAGCTTTCCATATTTCACAGCTAGCGCACCCTTTG-TTGA 900
Query 484 AAGCCTCGGGAA-ATGGGAATATCGTGTTTATTTCCTCGGTAACGGGGGTTGT-CTCTGG 541
||||||| || | |||| || ||| | || ||||| | | || || || | ||
Sbjct 901 AAGCCTCTGGCTCA-GGGAGCATTGTGCTCATGTCCTCAATTGCCGGAGTCGTGCA-TGT 958
Query 542 CACATCT---A-CCATATATGGTGTAACAAAAGGAGCCTTGAATCAACTGGCAAGAGATT 597
|| | | | |||| ||||| | ||| ||||||||| ||||||| ||||| ||| | |
Sbjct 959 CAG-TGTTGGATCCATCTATGGAGCAACCAAAGGAGCCATGAATCAGCTGGCTAGAAACT 1017
Query 598 TGGCGTGTGAATGGGCCAGTGACAACATAAGGGCTAAC 635
| || || |||||||| || ||||||||||| |||||
Sbjct 1018 TAGCTTGCGAATGGGCTAGCGACAACATAAGAACTAAC 1055
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36216771150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5