BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07480.1
Length=1972
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470774 jgi|Araly1|470774|fgenesh2_kg.1__728__AT1G07470.1 2104 0.0
Ahg470771 jgi|Araly1|470771|fgenesh2_kg.1__725__AT1G07480.2 1953 0.0
Ahg919473 jgi|Araly1|919473|scaffold_100754.1 424 2e-117
> Ahg470774 jgi|Araly1|470774|fgenesh2_kg.1__728__AT1G07470.1
Length=1453
Score = 2104 bits (1139), Expect = 0.0
Identities = 1368/1473 (93%), Gaps = 38/1473 (3%)
Strand=Plus/Plus
Query 9 CTCTCGATCTCTGATCTCCCTGTCTTCTGTCTACGCTTCGTCGCCGGCCGATTTCTCCCA 68
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 CTCTCGATCTCTGATCTCTCTGTCTTCTGTCTACGCTTCGTCGCCGGCCGATCTCTCCCA 60
Query 69 GACT-CGTCTTACCGCCTCCGGTCGAAACCCTAGATTCCCGGAGGACGAAATTCGTTTTT 127
|||| ||||||||| ||| | ||||| | |||||||||||||||| |||| | ||||
Sbjct 61 GACTCCGTCTTACCTCCT-C---CGAAA-TC-AGATTCCCGGAGGACG-AATTTGGTTTT 113
Query 128 TCGCCGGA-ACTAAATTAAGGAGATTTGAGAGGCT------ATGGGTACAACAACGACAA 180
|||||||| | |||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 114 TCGCCGGAGATTAAATTAAGGAGATTTGAGAGGCTGAGAAGATGGGTACAACTACGACAA 173
Query 181 CAAGCGCTGTGTATATCCATGTTATCGAGGATGTCGTCAACAAAGTTCGTGAGGAGTTCA 240
| || ||||||||||| ||||||||||||||||||||||||||||| || |||||||| |
Sbjct 174 CGAGTGCTGTGTATATTCATGTTATCGAGGATGTCGTCAACAAAGTCCGAGAGGAGTTTA 233
Query 241 TTAACAACGGAGGTCCTGGCGAGAGTGTTCTCAGCGAGCTTCAAGGAATTTGGGAGACGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 TTAACAACGGAGGTCCTGGCGAGAGTGTTCTCAGCGAGCTTCAAGGAATTTGGGAGACGA 293
Query 301 AGATGATGCAAGCCGGAGTCTTGAATGGACCAATAGAGAGGTCATCGGCTCAGAAGCCAA 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 AGATGATGCAAGCTGGAGTCTTGAATGGACCAATAGAGAGGTCATCGGCTCAGAAGCCAA 353
Query 361 CACCTGGTGGTCCACTGACTCATGATTTGAATGTTCCTTATGAAGGTACAGAGGAGTACG 420
||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 354 CACCTGGAGGTCCATTGACTCATGATTTGAATGTTCCCTATGAAGGTACAGAGGAGTATG 413
Query 421 AGACTCCCACTGCTGAAATGCTCTTCCCTCCTACACCATTGCAGACTCCCCTTCCAACGC 480
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 414 AGACTCCCACTGCTGAAATGCTCTTTCCTCCGACACCATTGCAGACTCCCCTTCCAACGC 473
Query 481 CGCTTCCCGGTACTGCTGATAACTCATCCATGTATAACATCCCTACCGGCTCAAGTGATT 540
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 CGCTTCCGGGTACTGCTGATAACTCATCCATGTATAACATCCCTACCGGCTCAAGTGATT 533
Query 541 ATCCCACTCCTGGAACTGAGAATGGAGTCAACATTGATGTTAAAGCAAGACCTAGTCCTT 600
|| | ||||||||||||||||||||||||||| |||||||||||| |||||| |||||||
Sbjct 534 ATACAACTCCTGGAACTGAGAATGGAGTCAACCTTGATGTTAAAGGAAGACCCAGTCCTT 593
Query 601 ATATGCCACCGCCTTCTCCGTGGACAAATCCTAGACTTGATGTCAATGTTGCTTATGTGG 660
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 594 ATATGCCACCGCCTTCTCCGTGGGCAAATCCTAGACTTGATGTCAATGTTGCTTATGTGG 653
Query 661 ATGGCCGTGATGAGCCTGAGAGAGGAAACTCTAACCAGCAGTTTACGCAGGATTTATTTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 ATGGCCGTGATGAGCCTGAGAGAGGAAACTCTAACCAGCAGTTTACGCAGGATTTATTTG 713
Query 721 TGCCATCCTCTGGGAAACGAAAACGTGATGATTCTTCTGGACATTATCAAAATGGTGGAT 780
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 714 TGCCATCCTCTGGGAAACGAAAACGTGACGATTCTTCTGGACATTATCAAAATGGTGGAT 773
Query 781 CTATACCTCAACAGGATGGTGCAGGCGATGCTATCCCTGAGGCAAACTTTGAGTGTGATG 840
||||||||||||||||||||||| ||||| |||| ||| ||||||||||||||||||||
Sbjct 774 CTATACCTCAACAGGATGGTGCAAGCGATACTATTCCTAAGGCAAACTTTGAGTGTGATA 833
Query 841 CATTCCGCATAACCTCTATTGGCGATAGAAAGGTACCACGAGACTTCTTCAGCTCATCAT 900
|| |||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||
Sbjct 834 CACTCCGCATAACCTCTGTTGGCGATAGAAAGGTCCCACGAGACTTCTTCTGCTCATCAT 893
Query 901 CGAAGATTCCTCAGGTTGATGGGCCAATGCCTGACCCTTATGATGAAATGCTCTCTACAC 960
| ||||||||||| |||||||||||||||||||||||||||||||||||||| || || |
Sbjct 894 CCAAGATTCCTCAAGTTGATGGGCCAATGCCTGACCCTTATGATGAAATGCTGTCCACCC 953
Query 961 CAAATATATATAGTTATCAAGGACCCAGTGAAGAGTTTAACGAGGCCAGAACTCCTGCTC 1020
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 954 CAAATATATACAGTTATCAAGGACCCAGTGAAGACTTTAACGAGGCCAGAACTCCTGCTC 1013
Query 1021 CAAACGAGATCCAAACGAGCACTCCTGTTGCTGTACAAAACGATATCATTGAAGATGATG 1080
||||||| |||||||| |||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 1014 CAAACGACATCCAAACAAGCACTCCTGTTACTGTACAAAACAATATCGTTGAAGATGATG 1073
Query 1081 AAGAGCTGTTGAACGAAGATGATGATGATGACGAGTTGGACGACCTAGAAAGTGGCGAGG 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 AAGAGCTGTTGAACGAAGATGATGATGATGACGAGTTGGACGACCTAGAAAGTGGCGAGG 1133
Query 1141 ATATGAACACACAACACCTGGTTTTAGCTCAATTTGACAAGGTGACGCGCACAAAGAGCA 1200
|||||||||| ||||| |||||| ||||||||||||| |||||||| |||||||||||||
Sbjct 1134 ATATGAACACGCAACATCTGGTTCTAGCTCAATTTGATAAGGTGACTCGCACAAAGAGCA 1193
Query 1201 GGTGGAAGTGCAGTCTGAAAGACGGGATCATGCATATAAACGATAAGGACATTCTCTTCA 1260
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 GGTGGAAGTGCAATCTGAAAGACGGGATCATGCATATAAACGATAAGGACATTCTCTTCA 1253
Query 1261 ACAAAGCAGCAGGCGAGTTTGACTTCTGATCTTAACACTAGCAATGATGCTTCTAGGAAA 1320
|||||||| |||||||||| ||||||||||||| ||||||| || |||||| ||| |||
Sbjct 1254 ACAAAGCAACAGGCGAGTTCGACTTCTGATCTTGACACTAG-AA--ATGCTTTTAGAAAA 1310
Query 1321 GTC-C--T--T-CAAATGTCCAGTGTCTTTCTTTTTACCTTATGATTTAAGACCGACCGA 1374
||| | | | ||||||| |||||||||||||||||||||| | |||| || ||| |
Sbjct 1311 GTCACAGTCCTTCAAATGTTCAGTGTCTTTCTTTTTACCTTACGGTTTA-GA--GAC--A 1365
Query 1375 GAGAGACATGAGTATTCATGGGAAAGTGTACTCTGGTTGGCTTGTTGTACAAAAAGAAAA 1434
|| | | | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 T-GAT---T-A-T-TT-ATGGGAAAGTGTACTCTGGTTGGCTTGTTGTACAAAAAGAAAA 1417
Query 1435 GTTTTTTC-TGTCGAAGAAGGCGTATCAACTTT 1466
| |||||| ||||||||||||||||||||||||
Sbjct 1418 GATTTTTCCTGTCGAAGAAGGCGTATCAACTTT 1450
> Ahg470771 jgi|Araly1|470771|fgenesh2_kg.1__725__AT1G07480.2
Length=1516
Score = 1953 bits (1057), Expect = 0.0
Identities = 1299/1411 (92%), Gaps = 36/1411 (3%)
Strand=Plus/Plus
Query 93 AAACCCTAGATTCCCGGAGGACGAAATTCGTTTTTTCGCCGGAACTAAATTAAGGAGATT 152
|||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 99 AAACTC-AGATTCCCGGAGGACGAAATTCGTTTTTTTGCCGGAACTAAATTAAGGAGATT 157
Query 153 TGAGAGGCT------ATGGGTACAACAACGACAACAAGCGCTGTGTATATCCATGTTATC 206
||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 158 TGAGAGGCTGAGAAGATGGGTACAACTACGACAACGAGCGCTGTGTATATCCATGTTATC 217
Query 207 GAGGATGTCGTCAACAAAGTTCGTGAGGAGTTCATTAACAACGGAGGTCCTGGCGAGAGT 266
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 218 GAGGATGTCGTCAACAAAGTCCGTGAGGAGTTTATTAACAACGGAGGTCCTGGCGAGAGC 277
Query 267 GTTCTCAGCGAGCTTCAAGGAATTTGGGAGACGAAGATGATGCAAGCCGGAGTCTTGAAT 326
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 278 GTTCTCAGCGAGCTTCAAGGAATTTGGGAGACGAAGATGATGCAAGCTGGAGTCTTGAAT 337
Query 327 GGACCAATAGAGAGGTCATCGGCTCAGAAGCCAACACCTGGTGGTCCACTGACTCATGAT 386
||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||
Sbjct 338 GGACCAATAGAGAGGTCATCGGCTCAGAAGCCAACACCTGGAGGTCCATTGACGCATGAT 397
Query 387 TTGAATGTTCCTTATGAAGGTACAGAGGAGTACGAGACTCCCACTGCTGAAATGCTCTTC 446
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 398 CTGAATGTTCCTTATGAAGGTACAGAGGAGTATGAGACTCCCACTGCTGAAATGCTCTTT 457
Query 447 CCTCCTACACCATTGCAGACTCCCCTTCCAACGCCGCTTCCCGGTACTGCTGATAACTCA 506
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 458 CCTCCGACACCATTGCAGACTCCCCTTCCAACGCCGCTTCCGGGTACTGCTGATAACTCT 517
Query 507 TCCATGTATAACATCCCTACCGGCTCAAGTGATTATCCCACTCCTGGAACTGAGAATGGA 566
||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 518 TCCATATATAACATCCCTACCGGCTCAAGTGATTATCCAACTCCTGGAAATGAGAATGGA 577
Query 567 GTCAACATTGATGTTAAAGCAAGACCTAGTCCTTATATGCCACCGCCTTCTCCGTGGACA 626
|||||| |||||||||||| |||||||||||||||||||||||| ||||| |||||| ||
Sbjct 578 GTCAACCTTGATGTTAAAGGAAGACCTAGTCCTTATATGCCACCTCCTTCCCCGTGGGCA 637
Query 627 AATCCTAGACTTGATGTCAATGTTGCTTATGTGGATGGCCGTGATGAGCCTGAGAGAGGA 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 AATCCTAGACTTGATGTCAATGTTGCTTATGTGGATGGCCGTGATGAGCCTGAGAGAGGA 697
Query 687 AACTCTAACCAGCAGTTTACGCAGGATTTATTTGTGCCATCCTCTGGGAAACGAAAACGT 746
|||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 698 AACTCTAATCAGCAGTTTACGCAGGACTTATT------ATCCTCTGGGAAACGAAAACGT 751
Query 747 GATGATTCTTCTGGACATTATCAAAATGGTGGATCTATACCTCAACAGGATGGTGCAGGC 806
||||||||||||| ||| |||||||||||||||| ||||||||| |||||||||||| ||
Sbjct 752 GATGATTCTTCTGCACACTATCAAAATGGTGGATGTATACCTCAGCAGGATGGTGCAAGC 811
Query 807 GATGCTATCCCTGAGGCAAACTTTGAGTGTGA-TGCATTCCGCATAACCTCTATTGGCGA 865
|||||||||||| ||||||||||||| ||| | |||| |||| ||||||| | |||||||
Sbjct 812 GATGCTATCCCTAAGGCAAACTTTGAATGT-ACTGCACTCCGGATAACCTATGTTGGCGA 870
Query 866 TAGAAAGGTACCACGAGACTTCT-TCAGCTCATCATCGAAGATTCCTCAGGTTGATGGGC 924
|||||| | |||||||| || | || |||||||||||||||||||||| ||||||||||
Sbjct 871 TAGAAATATCCCACGAGATTT-TATCTGCTCATCATCGAAGATTCCTCAAGTTGATGGGC 929
Query 925 CAATGCCTGACCCTTATGATGAAATGCTCTCTACACCAAATATATATAGTTATCAAGGAC 984
||||||||||||| |||||||||||| | || |||||||||||||| |||||||||||||
Sbjct 930 CAATGCCTGACCCGTATGATGAAATGTTGTCCACACCAAATATATACAGTTATCAAGGAC 989
Query 985 CCAGTGAAGAGTTTAACGAGGCCAGAACTCCTGCTCCAAACGAGATCCAAACGAGCACTC 1044
||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 CCAATGAAGACTTTAATGAGGCCAGAACTCCTGCTCCAAACGAGATCCAAACGAGCACTC 1049
Query 1045 CTGTTGCTGTACAAAACGATATCATTGAAGATGATGAAGAGCTGTTGAACGAAGATGATG 1104
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
Sbjct 1050 CTGTTGCTGTACAAAACGATATCGTTGAAGATGATGAAGAGCTCTTGAACGAAGATGACG 1109
Query 1105 ATGATGACGAGTTGGACGACCTAGAAAGTGGCGAGGATATGAACACACAACACCTGGTTT 1164
||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 1110 ATGATGACGAGTTGGACGACCTAGAAAGTGGTGAGGATATGAACACGCAACATCTGGTTT 1169
Query 1165 TAGCTCAATTTGACAAGGTGACGCGCACAAAGAGCAGGTGGAAGTGCAGTCTGAAAGACG 1224
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1170 TAGCTCAATTTGACAAGGTGACTCGCACAAAGAGCAGGTGGAAGTGCAATCTGAAAGACG 1229
Query 1225 GGATCATGCATATAAACGATAAGGACATTCTCTTCAACAAAGCAGCAGGCGAGTTTGACT 1284
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1230 GGATCATGCATATAAATGATAAGGACATTCTCTTCAACAAAGCAACAGGCGAGTTCGACT 1289
Query 1285 TCTGATCTTAACACTAGCA-ATGATGCTTCTAGGAAAGTC-C--T--T-CAAATGTCC-A 1336
||||||||| |||||||| | |||||||||| |||||| | | | |||||||| |
Sbjct 1290 TCTGATCTTGACACTAGCGCA--ATGCTTCTAGAAAAGTCACAGTCCTTCAAATGTCGGA 1347
Query 1337 GTGTCTTTCTTTTTACCTTATGATTTAAGACCGACC---GAGAGAGA--CATGAGTATTC 1391
||||||||||| |||||||||||||| |||||||| |||||||| ||||| ||||
Sbjct 1348 -TGTCTTTCTTTCTACCTTATGATTTA-GACCGACCTTCGAGAGAGAGACATGATTATTT 1405
Query 1392 ATGGGAAAGTGTACTCTGGTTGGCTTGTTGTACAAAAAGAAAAGTTTTTTCTGTC-GAAG 1450
||| |||||||||||||||||||||||||||||||||||| || |||||||| | ||||
Sbjct 1406 ATGTCAAAGTGTACTCTGGTTGGCTTGTTGTACAAAAAGAACAGATTTTTCTGGCCGAAG 1465
Query 1451 AAGGCGTATCAACTTTCACCTTGTTTCATGA 1481
|||||||||||||||| || |||||||||||
Sbjct 1466 AAGGCGTATCAACTTTGAC-TTGTTTCATGA 1495
> Ahg919473 jgi|Araly1|919473|scaffold_100754.1
Length=461
Score = 424 bits (229), Expect = 2e-117
Identities = 308/345 (89%), Gaps = 10/345 (3%)
Strand=Plus/Minus
Query 1629 AATGCTAAAACCCTCACTGTGGATGATCTACAAGCAGGAACTTGGTCTGAAACATATTTA 1688
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 454 AATGCTAAAACCCTCACTGTGAATGATCTACAAGCAGGAACTTGGTCTGAAACATATTCA 395
Query 1689 AGAGACTCATCTGGTCACTGTGGTCGCCCTTAGCCGAATGTTGCCACTCTATT-TTGTGG 1747
||||||||||||||||||| |||||| ||||||||||||| |||||| || | ||||||
Sbjct 394 AGAGACTCATCTGGTCACTATGGTCGACCTTAGCCGAATGCTGCCACCCT-TCCTTGTGG 336
Query 1748 TCCATCGAAGGCTGAGATCCTTTCTTTTCAGTAAGACTCACCGGAAACGTAAAATCGTGC 1807
||||| |||||||||||||| ||||| ||| || || | || |||||||||||||||||
Sbjct 335 TCCATTGAAGGCTGAGATCCGTTCTTCTCACTATTACCCGCCCGAAACGTAAAATCGTGC 276
Query 1808 CCTTCTCTAGTGGGAGAAGCTTGCG-AGTTTGGATTTACT-TGCCCTTCTCTAG-GAAGA 1864
|||||||||| ||||||||| || | | ||||||||| | ||||||||| ||| | ||
Sbjct 275 CCTTCTCTAGAGGGAGAAGCGTGTGGA-TTTGGATTTG-TGTGCCCTTCTTTAGAGT-GA 219
Query 1865 GAAGAGTGCGAATTTGGAGACACAAAGAGAGGTGAAAGCAGAGGAATAGGTGCACCTGCA 1924
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 218 GAAGAGTGCGAATTTGGAGAGACAAAGAGAGGTGAAAGCAGAGGAATAGCTGCACCTGCA 159
Query 1925 ACCT-CATCACCAGACTGCTGCAGAAAGGGATTCTCGGGAACACG 1968
|| | |||||| ||||||||||| |||||||||||||| ||||||
Sbjct 158 AC-TGCATCACAAGACTGCTGCACAAAGGGATTCTCGGAAACACG 115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74123616770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5