BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G07590.1 Length=2361 Score E Sequences producing significant alignments: (Bits) Value Ahg470785 jgi|Araly1|470785|fgenesh2_kg.1__739__AT1G07590.1 3277 0.0 > Ahg470785 jgi|Araly1|470785|fgenesh2_kg.1__739__AT1G07590.1 Length=2297 Score = 3277 bits (1774), Expect = 0.0 Identities = 2159/2336 (92%), Gaps = 62/2336 (3%) Strand=Plus/Plus Query 1 GAAATCACAAAAGCATCATAAGAAGAAGAAGAAACTACAATAGTTAATCAATCAAAGAGA 60 |||||||||||||||||| ||||||||||||||| ||||| | ||||||||||||||| Sbjct 1 GAAATCACAAAAGCATCAGAAGAAGAAGAAGAAAGTACAA-A---AATCAATCAAAGAGA 56 Query 61 AGTAAGAGAAATGGCAGATTCTAACTGTGGATGTGGCTCCTCCTGCAAATGTGGTGACTC 120 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 57 AGTAAGAGAAATGGCAGGTTCTAACTGTGGATGTGGCTCCTCCTGCAAATGTGGTGACTC 116 Query 121 TTGCAGTTGCGAGAAGAACTACAACAAGGAGTGCGACAACTGTAGCTGTGGATCAAACTG 180 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 117 TTGCAGTTGCGAGAAGAACTACAACCAGGAGTGCGACGACTGTAGCTGTGGATCAAACTG 176 Query 181 CAGCTGTGGGTCAAACTGTAACTGTTGATGAAATTATTATGGTCTAAAATCATATATATG 240 |||||||||||||||||||||||||||||| || |||| || || ||||||| Sbjct 177 CAGCTGTGGGTCAAACTGTAACTGTTGATG-AA--ATTA---TC----AT--TATATATC 224 Query 241 GCAGAAAAATTGGGGAAAATA-TGTGTTTTATGCTAAGAGATG-TGTGTGTGTTGTTGGA 298 |||||||||||||||||| | ||||||||||||||||||||| |||||||| ||||||| Sbjct 225 CCAGAAAAATTGGGGAAAA-ACTGTGTTTTATGCTAAGAGATGTTGTGTGTG-TGTTGGA 282 Query 299 ATAAAGACGTGACCGTTGTGTTGCGT--ATCAACTCTCTTAAGCTTTGAC-TTTTCCCAG 355 ||||||| |||||||||||||||||| || ||||||||||||||||||| |||| |||| Sbjct 283 ATAAAGATGTGACCGTTGTGTTGCGTAAAT-AACTCTCTTAAGCTTTGACTTTTTTCCAG 341 Query 356 CTTTGTATTTTCC--TATGT-ATGGTAATGGTGTGATTGTGTAATGTTTTCATATGT-AA 411 ||||||||||||| ||||| |||| ||||||||||| |||||||||||||||| | || Sbjct 342 CTTTGTATTTTCCTATATGTGGTGGTGATGGTGTGATTATGTAATGTTTTCATAT-TCAA 400 Query 412 CGTaaaaaaaaTATTTATGTGACATTGACTTTTGTGACTACTAAGATTTGTATATGTCTC 471 ||| ||||||||||||||||| ||||||||||||||||| |||||||||| | | ||| Sbjct 401 CGT-AAAAAAATATTTATGTG-TATTGACTTTTGTGACTATTAAGATTTGTCTGTCTCTG 458 Query 472 CTCCGTTTT-TTATTTAGGATTTAAGTTCAATCAGCTAAATTAATCATAAACAATTTAAG 530 |||| |||| ||||||||||| |||| |||||||||| |||||||||| ||||||||| | Sbjct 459 CTCC-TTTTCTTATTTAGGATATAAGCTCAATCAGCT-AATTAATCATGAACAATTTAGG 516 Query 531 TAAATATTCATATGAGAAGAAGTCAACCA--TA-TT-CTTATCGGGCCTTATATGTTAAT 586 |||||||| || | | | |||| ||||| || || |||||||||||||| | | | Sbjct 517 TAAATATT-AT-T-A-TATAAGTAAACCATGTACTTACTTATCGGGCCTTA-A-G----T 566 Query 587 GTTAAAAGGTTACGGGCCAGTAAGGTCCCAAAAAAGAAGAAGAGATGAGATCCATTATTG 646 ||| |||| |||||||||||||||||||| ||||||||||||| |||||||| || |||| Sbjct 567 GTTGAAAGTTTACGGGCCAGTAAGGTCCC-AAAAAGAAGAAGAAATGAGATCTATAATTG 625 Query 647 C-TCTCATGAGGCAACGAGAATATTTCGTTCAGGCAATTCGTCGAACAACTTGCGTGGC- 704 | | | ||||||| ||||||| ||||||| ||||||| |||||||||||||||||| | Sbjct 626 CGT-TGGTGAGGCAGCGAGAATGTTTCGTTGAGGCAATACGTCGAACAACTTGCGTGCCA 684 Query 705 -C-TCACCTGCGTTGAATCAAACTAACTTCCAAGCTTCGAGCTTTCTCACTACCCTAATA 762 | || |||||| ||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 685 TCTTCGCCTGCGGTGAATCAAACTAATTTCCAAGCTTCAAGCTTTCTCACTACCCTAATC 744 Query 763 TCTTCGAAGAAATCTCCGGAAGAG--A-CATGTATCGGATCGGAGGAAGAAGAAGAGGAG 819 |||||||||||||||||||||||| | ||||| |||| ||||| | ||||||||| ||| Sbjct 745 TCTTCGAAGAAATCTCCGGAAGAGACATCATGTCTCGGGTCGGATGTAGAAGAAGAAGAG 804 Query 820 CCCAACAAGTGTTTGTCTTTGAGAATCGAGAAGCTTCCGAAGGGCGTAACTGTTGGGTCT 879 |||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||| Sbjct 805 CCCAACAAGTGTTTGTCTGTGAGAATCGAGAAGCTCCCAAAGGGCGTAACTGTTGGGTCT 864 Query 880 GCTTTACAGAGCTGGATGGGTGATGGGTTTCCAGTTCATGGTGGAGATGTTTATCACGCC 939 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 865 GCGTTACAGAGCTGGATGGGTGATGGGTTTCCAGTTCATGGTGGAGATGTTTATCACGCT 924 Query 940 ATTAATCGATTGAGGAAACTCGGACGAAACAAACGTGCCCTTGAGTTGATGGAGTGGATA 999 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 925 ATTAATCGATTGAGGAAGCTCGGACGAAATAAACGTGCCCTTGAGTTGATGGAGTGGATA 984 Query 1000 ATCAGGGAAAGACCTTACCGTCTTGGTGAGCTAGAGTACTCTTACTTGCTCGAATTTACA 1059 |||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||| ||| Sbjct 985 ATCAGGGAAAGACCTTACCGTCCCGGTGAGCTAGAATACTCATACTTGCTGGAATTCACA 1044 Query 1060 GTCAAACTTCATGGCGTCTCGCAAGGAGAAAAGCTATTTACCCGTGTCCCTCAAGAGTTT 1119 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 1045 GTCAAACTTCATGGCGTCTCGCAAGGCGAAAAGCTTTTTACCCGTGTCCCTCAAGAGTTT 1104 Query 1120 CAGAACGAGCTTCTTTACAACAACCTTGTGATTGCTTGTTTAGACCAAGGTGTCATAAGG 1179 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1105 CAGAACGAGCTTCTTTACAATAACCTTGTGATTGCTTGTTTAGACCAAGGTGTCATAAGG 1164 Query 1180 CTTGCGCTAGAGTATATGAAGAAGATGAGAGAACTCGGTTACCGTACTTCCCATTTGGTC 1239 ||||| |||| |||||||||||||||||| ||||| ||||| ||||| |||||||||||| Sbjct 1165 CTTGCACTAGCGTATATGAAGAAGATGAGGGAACTTGGTTATCGTACATCCCATTTGGTC 1224 Query 1240 TACAACCGTCTTATAATTCGCAACTCTGCTCCCGGACGAAGAAAGCTAATAGCAAAAGAC 1299 |||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| Sbjct 1225 TACAACCGTCTTATAATTCGCAACTCAGCTCCCGGACGAAGAAAGCTAATCGCGAAAGAC 1284 Query 1300 CTTGCGCTCATGAAAGCTGACAAGGCGACTCCTCATGTCTCAACGTATCATATCTTGATG 1359 |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 1285 CTTGCGCTCATGAAAGCTGACAAGGCCACTCCTCATGTCTCAACATATCATATCTTGATG 1344 Query 1360 AAGCTTGAGGCTAATGAACATAACATCGATGGGGTGCTGAAGGCTTTTGATGGTATGAAG 1419 ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||| Sbjct 1345 AAGCTTGAGGCTAATGAACATAACATCGACGGGGTGCTAAATGCTTTTGATGGTATGAAG 1404 Query 1420 AAAGCGGGAGTTGAGCCAAATGAGGTGTCTTACTGTATATTGGCTATGGCACATGCTGTT 1479 ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 1405 AAAGCTGGAGTTGAGCCGAATGAGGTTTCTTACTGTATATTGGCTATGGCACATGCTGTT 1464 Query 1480 GCGAGATTGTATACAGTTGCAGAAGCCTATACCGAGGAAATAGAAAAATCTATCACAGGG 1539 ||||| |||||||||||||| |||||||||||||||||||||||||||||| |||| ||| Sbjct 1465 GCGAGGTTGTATACAGTTGCGGAAGCCTATACCGAGGAAATAGAAAAATCTGTCAC-GGG 1523 Query 1540 G-ATAATTGGTCGACCTTGGATATATTGATGATTCTATATGGGCGTTTAGGGAAAGAAAA 1598 | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1524 GAATAATTGGTCGACCTTAGATATATTGATGATTCTATATGGGCGTTTAGGGAAAGAAAA 1583 Query 1599 AGAGCTAGCGAGAACGTGGAATGTCATAAGAGGGTTTCATCATGTTAGATCCAAGAGTTA 1658 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1584 GGAGCTAGTAAGAACGTGGAATGTCATCAGAGGGTTTCATCATGTTAGATCCAAGAGTTA 1643 Query 1659 CTTACTGGCAACCGAAGCGTTTGCTCGAGTAGGGAACCTTGATAGAGCGGAAGAGCTCTG 1718 |||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1644 CTTACTGGCAACTGAAGCTTTTGCGCGAGTAGGGAACCTTGATAGAGCGGAAGAGCTCTG 1703 Query 1719 GTTAGAGATGAAAAACGTAAAAGGACTTAAAGAAACTGAGCAATTCAACTCTCTGCTCTC 1778 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 1704 GTTAGAGATGAAAAACGTAAGAGGACTCAAAGAAACTGAGCAATTCAACTCTCTGCTCTC 1763 Query 1779 GGTATACTGCAAGGACGGTTTGATAGAGAAGGCAATTGGTGTATTCCGCGAGATGACAGG 1838 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| || Sbjct 1764 GGTATACTGCAAAGACGGTTTGATAGAGAAGGCAATAGGTGTATTCCGCGAGATGATGGG 1823 Query 1839 AAACGGGTTTAAGCCTAATTCCATAACGTATAGACATCTTGCTCTTGGATGTGCTAAAGC 1898 | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1824 AGACGGGTTTAAGCCTAATTCCATAACGTATAGACATCTTGCTCTAGGATGTGCTAAAGC 1883 Query 1899 CAAACTGATGAAGGAAGCTCTCAAAAACATTGAGATGGGTTTGAATCTAAAGACGAGCAA 1958 ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct 1884 CAAACTGATGAAGGAAGCTCTCAAAAACATTGAAATGGGTTCGAATCTAAAGACGAGCAA 1943 Query 1959 AAGCATAGGAAGCTCAACGCCGTGGCTGGAGACGACTCTATCGATCATAGAGTGTTTTGC 2018 |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1944 TAGCATAAGAAGCTCAACGCCGTGGCTGGAGACGACTCTATCGATCATCGAGTGTTTTGC 2003 Query 2019 AGAGAAAGGTGATGTAGAGAACTCAGAGAAACTGTTTGAAGAGGTGAAGAATGCAAAGTA 2078 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2004 AGAGAAAGGTGATGTTGAGAACTCAGAGAAACTGTTTGAAGAGGTGAAGAATGCAAAGTA 2063 Query 2079 TAATAGGTATGCGTTTGTGTACAACGCTCTGTTCAAAGCTTATGTGAAGGCTAAAGTGTA 2138 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2064 TAATAGGTATCCGTTTGTGTACAACGCTCTGTTCAAAGCTTATGTGAAGGCTAAAGTGTA 2123 Query 2139 TGACCCTAATCTGTTCAAGAGGATGGTTCTAGGTGGAGCTAGGCCTGATGCTGAGTCATA 2198 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2124 TGACCCTAATCTGTTCAAGAGGATGGTTCTAGGCGGAGCTAGGCCTGATGCTGAGTCATA 2183 Query 2199 CAGTTTGTTGAAACTTGTCGAACAATATAAGCCCTGACACAATCAAGTCTGCTCCAAttt 2258 |||||||||||||||||| ||||||||||| ||||||| | ||||||||||||||| ||| Sbjct 2184 CAGTTTGTTGAAACTTGTTGAACAATATAACCCCTGACTCGATCAAGTCTGCTCCAGTTT 2243 Query 2259 ttttGATT-GATTGGATAGTTAGTGACTTGTGGGTTTAAGAAGTTGTTCGTAAAAG 2313 |||| ||| |||||||| | ||||||||||||||||||||||| |||| ||||||| Sbjct 2244 TTTT-ATTTGATTGGAT-GATAGTGACTTGTGGGTTTAAGAAGATGTTTGTAAAAG 2297 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88940722075 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5