BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07720.1
Length=1799
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470802 jgi|Araly1|470802|fgenesh2_kg.1__756__AT1G07720.1 2375 0.0
Ahg933324 jgi|Araly1|933324|scaffold_401312.1 1020 0.0
> Ahg470802 jgi|Araly1|470802|fgenesh2_kg.1__756__AT1G07720.1
Length=1683
Score = 2375 bits (1286), Expect = 0.0
Identities = 1396/1450 (96%), Gaps = 3/1450 (0%)
Strand=Plus/Plus
Query 37 AAAACACAATAATGGATCTTCTTGTTATGCTCCT-CTCTCTTCTCGTCTCTTATCTCATC 95
|||| |||||||||||||||||||||||||| || |||||||||| |||| |||||||||
Sbjct 3 AAAA-ACAATAATGGATCTTCTTGTTATGCT-CTCCTCTCTTCTCATCTCCTATCTCATC 60
Query 96 TTCAAGATCTGGAAACGCATAGACTCCAAGAGAGACCAAAACTGCTACATCTTGGACTAC 155
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 TTCAAGATCTGGAAACACATAGACTCCAAGAGAGATCAAAACTGCTACATCTTGGACTAC 120
Query 156 CAATGTCACAAACCTTCCGACGATCGTATGGTGAACACTCAATTCAGCGGTGATATCATC 215
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||
Sbjct 121 CAATGTCACAAACCTTCCGATGATCGTATGGTGAGCACTCAATTCAGCGGTGATGTCATC 180
Query 216 CTTCGAAACAAACACCTTCGGCTCAACGAGTACAAGTTCCTCCTCAAAGCCATCGTTAGT 275
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTCGAAACAAACACCTTCGTCTCAACGAGTACAAGTTCCTCCTCAAAGCCATCGTTAGT 240
Query 276 TCCGGTATCGGAGAGCAAACTTACGCACCAAGGCTCTTCTTTGAGGGCCGTGAACAGCGT 335
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 TCCGGTATCGGAGAGCAAACTTACGCACCAAGGCTCTTCTTCGAGGGCCGTGAACAGCGT 300
Query 336 CCTACGCTACAGGATGGGCTCTCGGAGATGGAAGAGTTTTACATAGACACCATCGAGAAA 395
||||||||||| |||||| ||||||||||||||||||||||||||||||| || ||||||
Sbjct 301 CCTACGCTACAAGATGGGATCTCGGAGATGGAAGAGTTTTACATAGACACAATTGAGAAA 360
Query 396 GTCCTTAAGAGAAACAAAATTTCACCTTCGGAGATTGACATCCTCGTAGTCAACGTCTCA 455
|||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 361 GTCCTTGAGAGAAACAAAATCTCACCTTCGGAGATTGACATCCTCGTGGTCAACGTCTCA 420
Query 456 ATGCTCAATTCAACGCCTTCACTATCTGCAAGAATCATTAACCATTACAAAATGAGAGAA 515
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 ATGCTCAATTCAACGCCTTCACTATCTGCAAGAATCATTAAACATTACAAAATGAGAGAG 480
Query 516 GACATAAAAGTCTTCAACTTGACGGCGATGGGATGTAGCGCGAGTGTTATCTCCATAGAT 575
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 GACATAAAAGTCTTCAACTTGACGGCGATGGGATGTAGCGCGAGTGTTATCTCTATAGAT 540
Query 576 ATTGTCAAAAACATCTTCAAAACATACAAGAACAAGCTTGCTCTTGTCGTGACCTCAGAG 635
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 ATTGTCAAAAACATCTTCAAAACATACAAGAACAAGCTTGCTCTTGTCGTGACCTCCGAG 600
Query 636 TCACTTAGTCCTAACTGGTACAGCGGAAACAACCGGTCCATGATTCTTGCCAACTGTTTG 695
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||
Sbjct 601 TCACTTAGTCCTAACTGGTACAGCGGAAACAACAGGTCCATGATCCTTGCCAACTGCTTG 660
Query 696 TTCCGCTCTGGTGGCTGCGCTGTTCTCTTGACGAACAAGCGTAGTCTGAGCAGGAGAGCC 755
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 TTCCGCTCCGGTGGCTGCGCTGTTCTCTTGACGAACAAGCGCAGTCTGAGCAGGAGAGCC 720
Query 756 ATGTTCAAGCTAAGGTGTTTGGTAAGGACGCACCATGGAGCCAGAGACGATTCATTCAAC 815
|||||||||||||||||||||||||| || ||||||||||||||||||||||||| || |
Sbjct 721 ATGTTCAAGCTAAGGTGTTTGGTAAGAACACACCATGGAGCCAGAGACGATTCATACAGC 780
Query 816 GCCTGTGTCCAAAAAGAAGACGAGCTAGGACATATCGGTGTCCACTTAGACAAGACTCTT 875
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 781 GCTTGTGTCCAAAAAGAAGACGAGCTAGGCCATATCGGTGTCCACTTAGACAAGACTCTT 840
Query 876 CCAAAAGCAGCGACTCGTGCTTTCATAGACAACCTCAAAGTCATCACTCCCAAGATTCTT 935
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CCAAAAGCGGCGACTCGTGCTTTCATAGACAACCTCAAAGTCATCACTCCCAAGATTCTT 900
Query 936 CCGGTAACAGAGCTTTTAAGGTTTATGTTGTGTCTTCTTCTCAAGAAGCTTCGTAGCAGC 995
|| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 901 CCCGTAACCGAGCTCTTAAGGTTTATGTTGTGTCTTCTTCTCAAGAAGCTTCGTAGCAAC 960
Query 996 CCTAGCAAAGGCTCGACGAACGTGACTCAGGCAGCTCCAAAGGCAGGGGTTAAAGCAGGG 1055
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 961 CCTAGCAAAGGCTCAACGAACGTGACTCAGGCAGCTCCAAAGGCAGGGATTAAAGCAGGG 1020
Query 1056 ATTAACTTCAAGACCGGTATTGACCATTTCTGCATTCACACTGGAGGTAAAGCGGTTATC 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATTAACTTCAAGACCGGTATTGACCATTTCTGCATTCACACTGGAGGTAAAGCGGTTATC 1080
Query 1116 GACGCGATCGGTTACAGCCTCGACTTAAACGAGTACGATCTTGAACCGGCGAGGATGACG 1175
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1081 GACGCAATCGGTTACAGCCTCGACTTAAACGAGTACGATCTAGAACCGGCGAGGATGACG 1140
Query 1176 TTACACCGGTTTGGAAACACGTCAGCGAGTAGCTTGTGGTATGTTTTGGGGTATATGGAG 1235
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CTACACCGGTTTGGGAACACGTCAGCGAGTAGCTTGTGGTATGTTTTGGGGTATATGGAG 1200
Query 1236 GCAAAGAAGAGGCTGAAGAGAGGAGATAGAGTGTTCATGATCAGCTTTGGGGCAGGTTTC 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GCAAAGAAGAGGCTGAAGAGAGGAGATAGAGTGTTCATGATCAGCTTTGGGGCAGGTTTC 1260
Query 1296 AAGTGCAATAGTTGCGTTTGGGAAGTTGTGAGAGATCTTAACGTTGGAGAAGCTGTAGGG 1355
||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||
Sbjct 1261 AAGTGCAATAGTTGCGTTTGGGAAGTTGTGAGAGATCTTAATGTTGGGGAAGCTCTAGGG 1320
Query 1356 AATGTGTGGAATCATTGCATTAATCAATACCCACCAAAATCGATTTTGAATCCGTTTTTC 1415
||||| ||||||||||||||| |||| |||||||||||||||||||||||||| |||||
Sbjct 1321 AATGTTTGGAATCATTGCATTGATCAGTACCCACCAAAATCGATTTTGAATCCATTTTTT 1380
Query 1416 GAGAAGTATGGTTGGATTCATGAAGAAGAAGATCCTGATACTTTCAAGATGCCCGAAGGA 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1381 GAGAAGTATGGTTGGATTCATGAAGAAGAAGATCCTGATACTTTCAAGATGCCTGAAGGA 1440
Query 1476 TTTATGTGAA 1485
||||||||||
Sbjct 1441 TTTATGTGAA 1450
Score = 167 bits (90), Expect = 3e-40
Identities = 139/159 (87%), Gaps = 18/159 (11%)
Strand=Plus/Plus
Query 1642 ttcttt-ttttctAATTGGATGGGAAAGAAAATATGAATGAC-AAAGATACTGCGATATA 1699
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1539 TTCTTTATTTTCTAATTGGATGGGAAAGAAAATATGAATGACAAAAGATACTGCG--ATA 1596
Query 1700 CTAGTTTTCTCTCAtttttttAAATAAATAA-TTCTTTGGGTGTAATAATCTATTTATTG 1758
|| | ||||||| ||||||||| || |||||||||||||||||||||||||
Sbjct 1597 -TA--------T--TTTTTTT-AATAAATAATTTTTTTGGGTGTAATAATCTATTTATTG 1644
Query 1759 TAT-CCTTTGGTAAATAATAATACCCCAAAAATTTTAAT 1796
||| ||||||||||||||||||||||| |||||||||||
Sbjct 1645 TATTCCTTTGGTAAATAATAATACCCCGAAAATTTTAAT 1683
> Ahg933324 jgi|Araly1|933324|scaffold_401312.1
Length=1476
Score = 1020 bits (552), Expect = 0.0
Identities = 1168/1455 (80%), Gaps = 84/1455 (6%)
Strand=Plus/Plus
Query 48 ATGGATCTTCT-TGTTATGC-TCCTCTCTCTTCTCGTCTCTTATCTCATCTTCAAGATCT 105
||||||||||| | || | | | ||||||||||| ||||||| ||| | ||||||||||
Sbjct 26 ATGGATCTTCTCT-TTCT-CTTTTTCTCTCTTCTCCTCTCTTACCTCTTTTTCAAGATCT 83
Query 106 GGAAACGCATAGACTCCAAGAGAGACCAAA-ACTGCTACATCTTGGACTACCAATGTCAC 164
|||||| ||||||||| |||| ||| ||| | |||||||| || ||||||||||||||
Sbjct 84 GGAAACTCATAGACTCAAAGAAAGA-TAAAGATTGCTACATTTTAGACTACCAATGTCAT 142
Query 165 AAACCTTCCGACGATCGTATGGTGAACACTCAATTCAGCGGTGATATCATCCTT--CGAA 222
|||||||| || ||||| ||||||| ||||||||||||||| || ||||| || ||||
Sbjct 143 AAACCTTCTGATGATCGAATGGTGAGCACTCAATTCAGCGGAGAGATCAT--TTACCGAA 200
Query 223 A-CAAACACCTTCGGCTCAA-CGAGTACAAGTTCCTCCTCAAAGCCATCGTTAGTTCCGG 280
| |||| ||||| |||| || ||| ||||||||||| |||||||| || || || || ||
Sbjct 201 ACCAAA-ACCTT-GGCTTAACCGAATACAAGTTCCTTCTCAAAGCAATAGTAAGCTCAGG 258
Query 281 TATCGGAGAGCAAACTTACGCACCAAGGCTCT-TCTTTGAGGGCCGTGAACAGCGTCCTA 339
|| ||||| ||||| ||||| ||||| || | ||||||| || || ||| ||||| ||
Sbjct 259 GATTGGAGAACAAACCTACGCTCCAAGACT-TGTCTTTGAAGGTCGAGAAGAGCGTGCTT 317
Query 340 CGCTACAGGATGGGCTCTCGGAGATGGAAGAGTTTTACATAGACACCATC-GAGAAAGTC 398
|| |||| || ||| ||||||||||||||||||| ||| |||||| |||| || ||| ||
Sbjct 318 CGTTACAAGACGGGATCTCGGAGATGGAAGAGTTCTACGTAGACAGCATCGGA-AAACTC 376
Query 399 CTTAAGAGAAA-CAAAATTTCACCTTC-GGAGATTGACATCCTCGTAGTCAACGTCTCAA 456
|| ||||||| | ||||||| || || || || ||||||||||||||||||||||| |
Sbjct 377 CTGGAGAGAAATC-AAATTTCTCC-TCAAGACATAGACATCCTCGTAGTCAACGTCTCCA 434
Query 457 TGCTCAATTCAACGCCTTCACTATCTGCAAGAATCATTAACCATTACAAAATGAGAGAAG 516
||||| |||||| ||||| || || |||||||||| ||||||||||| |||||||| |
Sbjct 435 TGCTCTCTTCAACACCTTCTTTAGCTTCAAGAATCATAAACCATTACAAGATGAGAGACG 494
Query 517 ACATAAAAGTCTTCAACTTGA-CGGCGATGGGATGTAGCGCGAGTGTTATCTCCATAGAT 575
|| | |||||||||||||| | ||| ||||||||| ||||| ||| | |||||| ||||
Sbjct 495 ACGTCAAAGTCTTCAACTTAACCGG-GATGGGATGCAGCGCAAGTCTAATCTCCGTAGAC 553
Query 576 ATTGTCAAAAACATCTTCAA-AACATAC-AAGAACAAGCTT-GCTCTTGTCG-TGACCTC 631
|||||||| |||||||| || | | ||| | |||||| || |||||||| | | |||||
Sbjct 554 ATTGTCAAGAACATCTTTAAGAGC-TACGCA-AACAAG-TTAGCTCTTGTTGCT-ACCTC 609
Query 632 AGAGTCACTT-AGTCCTAACTGGTACAGCGGAAACAACCGGTCCATGATTCTT-GCCAAC 689
||||| || || ||||| ||||| ||||||||||||||||| |||| |||| ||||||
Sbjct 610 CGAGTC-TTTGAGCCCTAATTGGTATAGCGGAAACAACCGGTCGATGA-TCTTAGCCAAC 667
Query 690 TGTTTGTTCCGCTCTGGTGGCTGCGCTGTTCTCTTGACGAACAAGCGTAGTC-TG-AGCA 747
||||||||||| || ||||| || ||| |||||||||| ||||| ||||| | || || |
Sbjct 668 TGTTTGTTCCGGTCCGGTGGATGTGCTATTCTCTTGACTAACAAACGTAG-CTTGAAG-A 725
Query 748 GGAGA-GCCATGTTCAAGCT-AAGGTGTTTGGTAAGGACGCACCATGGAGCCAGAGACGA 805
|| | || ||||| ||||| || |||| ||||| |||| ||||||||||| ||||| ||
Sbjct 726 AGA-ATGCAATGTTTAAGCTCAA-GTGTATGGTACGGACTCACCATGGAGCTAGAGAGGA 783
Query 806 TTCATT-CAA-CGCCTGTGTCCAAAAAGAAGACGAGCTAGGACATATC-GGTGTCCACTT 862
|| || || | ||| ||||| |||||||| | ||| | | || ||| | ||||
Sbjct 784 GTC-TTATAATTG-TTGTATCCAAGCCGAAGACGAACAAGGCCGTGTCGGGT-TTTACTT 840
Query 863 AGACAAGACTCTTCCAAAAGCAGCGACTCGTGCTTTCATAGACAACCTCAAAGTCATCAC 922
|| |||| ||| |||||||| || ||||||||||| ||||||||||||| || || ||
Sbjct 841 AGGGAAGAATCTACCAAAAGCTGCCACTCGTGCTTTTGTAGACAACCTCAAGGTTATAAC 900
Query 923 TCCCAAGATTCTTCCGGTAACAGAGCTTTTAAGGTTTATGTT-GTGTCTTCTTC-TCAAG 980
|||||||||||||| |||| |||||||||||||| ||||| | |||| || |||||
Sbjct 901 ACCCAAGATTCTTCCTATAACCGAGCTTTTAAGGTTCATGTTAAAG-CTTC-TCATCAAG 958
Query 981 ------AAGCTTCGT-AGCAGCCCTAGCAAAGGCTCGACGAACGTGACTCAGGCAGCTCC 1033
||| ||||| | | ||||||||| || || ||||| | ||| | | ||
Sbjct 959 AAAATCAAGATTCGTCA-AAACCCTAGCAAGGGTTCCACGAA--T--CTC---C--CACC 1008
Query 1034 AAAGGCA-GGGGTTAAA-GCAGGGATTAACTTCAAGACCGGTATTGACCATTTCTGCATT 1091
|| | ||||| ||||| || |||||||||||||| || || ||||| ||||||
Sbjct 1009 --GGGGACTCCTTTAAAGGCAGGAATCAACTTCAAGACCGGGATCGAACATTTTTGCATT 1066
Query 1092 CACACTGGAGGTAAAGCGGTTATCGACGCGATCGGTTACAGCCTCGACTTAAACGAGTAC 1151
|| || ||||| ||||| || || || | ||| || | ||| | || |||||||||||
Sbjct 1067 CATACCGGAGGAAAAGCTGTGATTGATGGGATTGGACATAGCTTGGATTTAAACGAGTAT 1126
Query 1152 GATCTTGAACCGGCGAGGATGACGT-TACACCGGTTTGGAAACACGTCAGCGAGTAGCTT 1210
||| ||||||||||||||||||| | | ||||||||||| || || ||||||||||| ||
Sbjct 1127 GATATTGAACCGGCGAGGATGAC-TCTTCACCGGTTTGGGAATACTTCAGCGAGTAGTTT 1185
Query 1211 GTGGTATGTTTTGGGGTATATGGAGGCAAAGAAGAGGCTGAAGAGAGGAGATAGAGTGTT 1270
||||||||| |||| || |||||||| |||||||| ||||||||||||||||||||||
Sbjct 1186 GTGGTATGTGTTGGCTTACATGGAGGCCAAGAAGAGATTGAAGAGAGGAGATAGAGTGTT 1245
Query 1271 CATGATCAGCTTTGGGGCAGGTTTCAAGTGCAATAGTTGCGTTTGGGAAGTTGTGAGAGA 1330
||||| |||||||| || ||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1246 TATGATAAGCTTTGGAGCTGGTTTTAAGTGTAATAGCTGCGTTTGGGAAGTTGTGAGAGA 1305
Query 1331 TCTTAAC-GTTGGAGAAGCTGTAGGGAATGTGTGGAATCATTGCATTAATCAATACCCAC 1389
||||| | ||||| ||| | ||| ||||||||||||||||||||| || | || ||||
Sbjct 1306 TCTTA-CTGTTGGTGAATCAAAAGGAAATGTGTGGAATCATTGCATTGATGATTATCCAC 1364
Query 1390 CAAAATCGATTTTGAATCCGTT-TTTCGAGAAGTATGGTTGGATTCATGAAGAAGAAGAT 1448
||||||||||||||||||| || ||| ||||||| |||||||||||| | || ||||||
Sbjct 1365 CAAAATCGATTTTGAATCC-TTATTTGGAGAAGTTTGGTTGGATTCA--A-GATGAAGAT 1420
Query 1449 CCTGATACTTTCAAG 1463
||||| |||||||||
Sbjct 1421 CCTGACACTTTCAAG 1435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67534004385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5