BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G07725.1 Length=2472 Score E Sequences producing significant alignments: (Bits) Value Ahg919501 jgi|Araly1|919501|scaffold_100782.1 2839 0.0 > Ahg919501 jgi|Araly1|919501|scaffold_100782.1 Length=1883 Score = 2839 bits (1537), Expect = 0.0 Identities = 1768/1881 (94%), Gaps = 10/1881 (1%) Strand=Plus/Plus Query 156 TTTCTTCAAACCCAAGAAACAATGGTGCTCTTGAAACCCACCACCTTATCAAAATCCTCT 215 |||||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||| Sbjct 1 TTTCTTCAAACCCAAGAAACGATGGTGCTCTTGAAACCCTCTGCCTTAACAAAATCCTCT 60 Query 216 AAGGTCGGGCCGCAACAGCAACAGGGCTTCTCCGAGTCTCTAATCGGCGATAGTGTGGAG 275 ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 61 AAGCTCGGGCCGCAACAGCAACAAGGCTTCTCCGAGTCTCTAATCGGCGATAGTGTGGAG 120 Query 276 GCAGCTGACGCCTTCATATGCCAATGGGTTACTCCACACCTCTGCGACTCTTCTTCTTCT 335 ||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 121 GCAGCTGACGCGTTCATATGCCAATGGGTTACTCCACACCTTTACGACTCTTCTTCTTCT 180 Query 336 TCATGCAGCCTCTCTTCCCTCTTCTCCGCTCAAAACCGCCTAGAAGGCAGACGCTTCCTC 395 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 181 TCATGCAGCCTCTCTTCCCTCTTCTCCGCACAAAACCGCCTAGAAGGCAGACGCTTCCTC 240 Query 396 GAGGTTCTCGGCAAGTTACAATACGCCATTCAGAGCACCGTTGCTATGAATCCGGACTCC 455 ||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 241 GAGGTTCTCGGCAGGTTACAATACACCATTCAGAGTACCGTTGCTATGAATCCGGACTCC 300 Query 456 GCTAAGCTTGCTAAAGGACAGGATTTGATGCGGAAAGCTATGAAGCATTTGGAGAAGGAG 515 ||||| || ||| |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GCTAAACTCGCTCAAGGGCAGGATTTGATGCGGAAAGCTATGAAGCATTTGGAGAAGGAG 360 Query 516 TTTTACCGGGTTTTGAAATCGAATCGCCGCTTTCTGAGTCCAGAATCCGTCTCTGGTTGG 575 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TTTTACCGGGTTTTGAAATCGAATCGCCGCTTTCTGAGTCCAGAATCCGTCTCTGGTTGG 420 Query 576 TCTTCTGAATCCAACATACCTTCGAGATCAAGTGGAACCGCTTCGGATTCTTCATCAGAT 635 || ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 421 TCATCTGAATCCAACACACCTTCGAGATCAAGTGGAACCGCTTCTGATTCTTCATCAGAT 480 Query 636 GGAGAGCTTTACTCTGAATCCTCATCGGAATTAGGTAAAGACATAGGAGGAGGAGGGAAT 695 ||||||||| | || ||||| ||||||||||||||||| |||| | ||||||| ||| Sbjct 481 GGAGAGCTTGATTCCGAATCTTCATCGGAATTAGGTAACGACA--G-AGGAGGA---AAT 534 Query 696 TCTGATGCTATTGTTGATTTGAAGATGATAGCAAATTGCATGATCTCCTCTGGTTACGAG 755 ||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 535 TCTGAAGCTATTGTGGATTTGAAGATGATAGCAAATTGCATGATCTCATCTGGTTACGAG 594 Query 756 AAGGATTGTGTTAAAATCTACAAGAAGTTTCGCAAAAAGATCATCGTCGACACATTGTCT 815 ||||||||||||||||| |||||||||||||| |||||||||||||||||| || ||||| Sbjct 595 AAGGATTGTGTTAAAATATACAAGAAGTTTCGAAAAAAGATCATCGTCGACGCACTGTCT 654 Query 816 CATCTAGGGTTCGAGAAGCTAACCTCTACACAGATGCAGAAACTGGAATGGGAGATTCTG 875 || |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 655 CAGCTAGGGCTCGAGAAGCTAACCTCTACGCAGATGCAGAAACTGGAATGGGAGATTCTG 714 Query 876 GAGAAGAAGATCAAAATATGGGTGATTGTTGCGAGAGTAGCAATCACCACTCTGTTCAAC 935 ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct 715 GAGAAGAAGATCAAAATATGGGTGAGGGTTGCGAGAGTAGCAATCAACACTCTGTTCAAC 774 Query 936 GGAGAACGAATCCTTTCCGATCACATTTTCTCCTCCTCCGTCGCTGAATCTTGCTTCGTT 995 || ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 775 GGCGAACGTATCCTTTCCGATCACATTTTCTCCTCCTCCGCCGCTGAATCTTGCTTCGTG 834 Query 996 GACATAACGCTACAGAGCGCGTTAAACCTCTTCATCTTCTCACTAACCGTAGCGAAATCC 1055 || || ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 835 GAGATTACGCTACAGAGCGCGTTAAACCTCTTCATCTTCTCACTAACAGTAGCAAAATCC 894 Query 1056 AGAAAAACTGCAGAGAAGATCTTCCCTACGCTTGACGTTTACCAGACGATCTTGCAACTG 1115 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| Sbjct 895 AGAAAAACTGCAGAGAAAATCTTCCCTACGCTTGACGTTTACCAGACAATCTTGCATCTG 954 Query 1116 ACTCCCAAAATCGATCAGATTTTTAGCTACGATTCAACCGCTGCCGTTAGATTACAGGCG 1175 | |||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 955 ATTCCCAAAATCGATCAGATCTTCAGCTACGATTCAACCGCTGCCGTTAGATTACAGGCG 1014 Query 1176 AATGAATCTCTAGAGAAGCTATCGGAATCGGTGAATGCAATGATGACGGAGTTTCAATCG 1235 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 1015 AATGAATCTCTAGAGAAACTATCGGAATCGGTGAATGCGATGATGACGGAGTTTCAATCG 1074 Query 1236 TCGATTACGAAGGAATCGTCGAAATCGGCGATTTCTGGCGGCGGAGTTCATCAGCTCACG 1295 ||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||| Sbjct 1075 TCGATTACGAAAGAATCGTCGAAATCGGCGATATCTGGTGGCGGAGTTCACCAGCTCACG 1134 Query 1296 AGGTATGTGATGAACTTCATCGTCTTCCTCGCAGACTACAGCGATTCTCTCGCCACCATT 1355 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 1135 AGGTATGTGATGAACTTCATCGTCTTCCTCGCAGACTACAGCGATTCTCTCGCTACAATT 1194 Query 1356 CTCAAGGAGTCATCGTTACCTTTACCGGAGGATTACTTCAGTAGCAGCGGCGAAGAGAAT 1415 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| Sbjct 1195 CTCAAGGAGTCATCGTTACCTTTACCAGAGGATTACTTCAGCAGCAGCGGCGAAGAAAAT 1254 Query 1416 CCAGGATCCGGTGATCGTTCTCCGATGGCGGCGAGACTCGCGTGGTTGATTCTCGTCTTG 1475 ||||||||||||| ||| |||||||||||||||||||||||||||||||| || |||||| Sbjct 1255 CCAGGATCCGGTGGTCGGTCTCCGATGGCGGCGAGACTCGCGTGGTTGATACTGGTCTTG 1314 Query 1476 CTCTGTAAAATCGACGCCAAATCTCGGCTCTACAACGACTCGGCTCTATCGTATCTCTTC 1535 ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 1315 CTCTGCAAAATCGACGCCAAATCTCGGCTCTACAACGACTCTGCTCTCTCGTATCTCTTC 1374 Query 1536 CTAGCGAACAACCTCCATTACGTTGTGACCAAGGTCCGTACATCGAATCTCAGACTCGTA 1595 || || ||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 1375 CTCGCCAACAACCTCCATTACGTTGTGACCAAGGTCCGTACATCGAACCTCAGAGTCGTA 1434 Query 1596 CTCGGAGACGATTGGGTAGCGAATCACGAGGTTAAAGTGAATCAATACCTCGAGAAATAC 1655 |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 1435 CTCGGAGACGATTGGGTAGCGAATCACGAGGTTAAAGTGAGTCAGTACCTCGAGAAATAC 1494 Query 1656 GAAAAAATGGCCTGGGGGGATGTGAT-AGCGTCGCTCCCCGGTGATTCAACGGCGGGGAC 1714 || |||||||| ||||| || ||||| | ||||| ||||| | ||||||||||||| ||| Sbjct 1495 GAGAAAATGGCGTGGGGAGACGTGATTA-CGTCGATCCCCAGAGATTCAACGGCGGAGAC 1553 Query 1715 GGAG-GCGGAGGAGTCTCTGAGACGGTTCAACGAGGCGTTCGAAGAGGCTTACAAGAAGC 1773 |||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1554 GGAGAGAG-AGGAGTCTCTGAGACGGTTCAACGAGGCGTTCGAAGAGGCTTACAAGAAGC 1612 Query 1774 ACAAGACATGGGTCGTACCCGACCCGAACCTGAGAGACGAGATCCAAGCGTCCATAGCGA 1833 ||||||| |||||||||||||||||||||||||||| |||||||||||| ||| |||||| Sbjct 1613 ACAAGACTTGGGTCGTACCCGACCCGAACCTGAGAGGCGAGATCCAAGCCTCCGTAGCGA 1672 Query 1834 GAAAACTAATGCCCGGGTATACGGGTTTCTATAAGAAACACCCGGTCGGGTCATGCAATA 1893 |||| || |||||||||||||||||||||||||||||| |||||||||||||||| | | Sbjct 1673 GAAAGCTCATGCCCGGGTATACGGGTTTCTATAAGAAATACCCGGTCGGGTCATGTGAGA 1732 Query 1894 TTGTCAGATTTACCCCTGAAGATCTAAATAATTACATAACCGACCTATATGTTGGTTTAG 1953 ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||| Sbjct 1733 TTGTCAGATTTACCCCTGAAGATCTTAATAATTACATAACCGACCTCTATATTGGTTTAG 1792 Query 1954 GAAGATCCGTGCCCGTATCCAAAACTAAGAAGTATATGGTTAGCCCAAGCCATACGACGG 2013 |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 1793 AAAGATCCGTGCCCGTATCCAAAACTAAGAAGTATATGGTTAGCCAAAGCCATGCGACGG 1852 Query 2014 ATTTGAAGTAATAGCTCCATG 2034 ||||||||||||||||| ||| Sbjct 1853 ATTTGAAGTAATAGCTCTATG 1873 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 93168739270 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5