BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08060.1
Length=6554
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470861 jgi|Araly1|470861|fgenesh2_kg.1__815__AT1G08060.1 7563 0.0
Ahg913105 jgi|Araly1|913105|Al_scaffold_0001_3359 518 3e-145
> Ahg470861 jgi|Araly1|470861|fgenesh2_kg.1__815__AT1G08060.1
Length=6510
Score = 7563 bits (4095), Expect = 0.0
Identities = 4932/5316 (93%), Gaps = 137/5316 (3%)
Strand=Plus/Plus
Query 1103 TTGGTGAAACTAGTTTAGAAAAAG-AATATCCACAAAAGTTTCAAGATGATAACACAGAT 1161
|||||||||||||||||| | ||| |||||||||||||||||||||||| ||||||||||
Sbjct 1101 TTGGTGAAACTAGTTTAG-AGAAGAAATATCCACAAAAGTTTCAAGATGGTAACACAGAT 1159
Query 1162 TGTCTACCACCTGCAAATGCAGAATCAAA-AAGGCTGCCAGTTGGCGAAACTAGTTTAGA 1220
||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||
Sbjct 1160 TGTCTACCACCTGCAAATGCAGAATCAAAGAA-GCTGCCAGTTGGCCAAACTAGTTTAGA 1218
Query 1221 AAAGGACACTGATTTTCCTTTGAAATCAACT-ACGGAGACTGGAAAGATGGTTCTTTATG 1279
|||||||||||||||||||||||||||| | |||||||| | |||||||||||||||||
Sbjct 1219 CAAGGACACTGATTTTCCTTTGAAATCAA-TAACGGAGACCGAAAAGATGGTTCTTTATG 1277
Query 1280 CATCCCCCATAGTTGAAACTAGGGATGACAGCGTTATATG-TTCACCATCT-ACAAATTT 1337
||||||||||||| |||||||||||||||||||||||| | |||||||||| | ||||||
Sbjct 1278 CATCCCCCATAGTCGAAACTAGGGATGACAGCGTTATA-GCTTCACCATCTGA-AAATTT 1335
Query 1338 AGAAACCCAAAAG-CTTCTTGTCAGTAAAACTGGCTTAGAAACCGACATAGTTTTGCCTT 1396
||||||||||||| ||| |||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1336 AGAAACCCAAAAGCCTT-TTGTCAGTAAAACTGGTTTAGAAACCGACATAGGTTTGCCTT 1394
Query 1397 TGAAAAGAAAAAGAGACACTGCAGAAATTGAGCTGGATGCATGTGCTACAGTTGCAAATG 1456
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1395 TGAAAAGAAAAAGAGACACTGCAGGAATTGAGCTGGATGCATGTGCCACAGTTGCAAATG 1454
Query 1457 GAGATGATCACGTTATGAGTTCTGATGGGGTCATTCCATCTCCATCTGGGTGCAAAAATG 1516
||||||| || |||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1455 GAGATGACCATGTTATGAGTTCTGATGGGGTCAATCCATCTCCATTTGGGTGCAAAAATG 1514
Query 1517 ATAATCGACCTGAAATGTGCAACACGTGTAAAAAACGGCAAAAGGTCAACGGTGATTGTC 1576
|||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||| ||
Sbjct 1515 ATAATCAACCTGAAATGTGCAACACATGTAAAAAACGGCAAAAGGTCAATGGTGATTTTC 1574
Query 1577 AAAATAGGAGTGTTTGCTCCTGCATTGTCCAGCCAGTTGAAGAATCTGATAACGTGACAC 1636
||||| |||||||||||||||||||| |||||||||||||||||||||| || ||||||
Sbjct 1575 AAAATCTGAGTGTTTGCTCCTGCATTGCCCAGCCAGTTGAAGAATCTGATCACTTGACAC 1634
Query 1637 AGGATATGAAAGAAACTGGACCAGTTACGAGCAGAGAATATGAGGAGAACGGGCAAATAC 1696
|||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||| |
Sbjct 1635 AGGATATGAAGGAAACTGGACCAGCTACGAGCAGGGAATATGAGGAGAACGGGCAAATGC 1694
Query 1697 AACATGGTAAATCAAGTGATCCCAAATTCTATTCTTCGGTGTACCCAGAGTATTGGGTTC 1756
|||| |||||||||||||| |||||||| ||||||||| |||||||||||||||||||||
Sbjct 1695 AACACGGTAAATCAAGTGAACCCAAATTGTATTCTTCGATGTACCCAGAGTATTGGGTTC 1754
Query 1757 CTGTGCAGCTATCAGATGTACAGCTGGAGCAATACTGTCAGACTCTCTTCTCCAAATCCT 1816
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1755 CTGTGCAGCTATCAGACGTACAGCTGGAGCAATACTGTCGGACTCTCTTCTCCAAATCCT 1814
Query 1817 TATCTCTTTCTTCACTTTCGAAGATTGATCTTGGAGCTCTAGAAGAAACTCTCAATTCTG 1876
|||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1815 TATCTCTTTCTTCACTGTCGAAGATTGATCTTGGAACTCTCGAAGAAACTCTCAATTCTG 1874
Query 1877 TAAGAAAAACCTGTGACCATCCATACGTTATGGATGCATCTTTGAAACAACTGCTCACCA 1936
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1875 TAAGGAAAACCTGTGACCATCCATACGTTATGGATGCATCTTTGAAACAACTGCTCACCA 1934
Query 1937 AGAATCTGGAGTTGCATGAAATCCTGGATGTAGAAATTAAAGCGAGCGGGAAACTTCACC 1996
||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||| |
Sbjct 1935 AGAATCTGGAGTTGCATAAAATCCTGGATGTAGAAGTTAAAGCTAGCGGGAAACTTCAGC 1994
Query 1997 TCCTTGATAAAATGCTTACTCATATAAAAAAGAATGGTTTAAAAGCAGTTGTCTTCTACC 2056
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1995 TCCTTGATGAAATGCTTACTCATATAAAAAAGAATGGTTTAAAAGCAGTTGTCTTCTACC 2054
Query 2057 AGGCAACACAAACCCCTGAAGGGCTTCTGCTTGGTAATATTCTCGAAGATTTTGTGGGTC 2116
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2055 AGGCAGCACAAACTCCTGAAGGGCTTCTGCTTGGTAATATTCTCGAAGATTTTGTGGGTC 2114
Query 2117 AAAGATTTGGTCCAAAATCTTATGAGCATGGGATATATTCCTCAAAGAAGAACTCCGCTA 2176
| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2115 ACAGATTTGGTCCAAAATCTTATGAGCATGGGATCTATTCCTCAAAGAAGAA---CGCTA 2171
Query 2177 TAAACAATTTCAACAAGGAGAGTCAATGCTGTGTTCTGCTGTTGGAAACACGTGCCTGCA 2236
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2172 TAAACAATTTCAACAAGGAGAGTCAATGCTGTGTTCTGCTGTTGGAAACACGTGCTTGCA 2231
Query 2237 GTCAAACCATTAAACTCTTGCGAGCTGATGCGTTTATTCTTTTTGGAAGCAGCTTGAATC 2296
|||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||
Sbjct 2232 GTCAAACCATTAAACTCTTGCGGGCTGAAGTGTTTATTCTTTTTGGAAGCAGCTTGAATC 2291
Query 2297 CATCGCATGATGTTAAGCACGTAGAGAAGATAAAAATCGAGTCATGTTCTGAAAGAACTA 2356
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2292 CATCGCATGATGTTAAGCACTTAGAGAAGATAAAAATCGAGTCATGTTCTGAAAGAACTA 2351
Query 2357 AGATATTCCGATTGTACTCAGTATGTACAGTTGAAGAAAAAGCCCTGATTCTGGCTAGGC 2416
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2352 AGATATTCCGGTTGTACTCAGTTTGTACAGTTGAAGAAAAAGCCCTGATTCTGGCTAGGC 2411
Query 2417 AAAATAAGCGGCAAAATAAAGCTGTAGAGAACCTAAACCGCTCTCTCACGCACGCACTGC 2476
||||||||||||| |||| |||||||||||||||| ||| ||||||||||| |||||||
Sbjct 2412 AAAATAAGCGGCACCATAAGGCTGTAGAGAACCTAAGCCGTTCTCTCACGCATGCACTGC 2471
Query 2477 TCATGTGGGGGGCGTCATACTTATTTGATAAACTGGATCATTTTCACAGCAGTGAAACTC 2536
|||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||| |
Sbjct 2472 TCATGTGGGGGGCGACATACTTATTTGATAGGCTGGATCATTTTCACGGCAGTGAAACCC 2531
Query 2537 CAGATTCAGGAGTTTCATTTGAACAATCTATTATGGACGGCGTGATTCATGAATTCTCGT 2596
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2532 CACATTCAGGAGTTTCATTTGAACAATCTATTATGGACGGTGTGATTCATGAATTCTCGT 2591
Query 2597 CCATACTTTCTTCCAAAGGTGGAGAAGAAAATGAAGTCAAGCTGTGTCTACTTTTGGAGG 2656
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2592 CCATACTTTCTTCCAAAGGTGGAGAAGAAAATGAAGTCAAGCTGTGTCTACTTTTGGAAG 2651
Query 2657 CCAAGCATGCTCAGGGAACTTACAGCAGTGATTCTACTCTATTTGGTGAAGACCATATTA 2716
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2652 CCAAGCATGCTCAGGGAACTTACAGCACTGATTCTACTCTATTTGGTGAAGACCATATTA 2711
Query 2717 AGTTGTCAGATGAAGA--G--A--GTCCAAATATATTTTGGTCAAAGCTGTTGGGGGGAA 2770
||||||||||||| || | | ||||||||||||||||| ||||||||||||||||||
Sbjct 2712 AGTTGTCAGATGACGATAGTCATAGTCCAAATATATTTTGGACAAAGCTGTTGGGGGGAA 2771
Query 2771 AAAATCCTATGTGGAAATACCCTTCAGATACTCCCCAAAGGAATCGAAAACGAGTTCAGT 2830
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2772 AGAATCCTATGTGGAAATACCCTTCAGATACTCCCCAAAGGAATCGAAAAAGAGTTCAGT 2831
Query 2831 ATTTTGAGGGTTCTGAAGCGAGTCCCAAAACTGGCGATGGTGGAAATGCAAAGAAGCGAA 2890
|||||||||| ||||||| ||||||||||| ||||||||| |||||||||||||||||||
Sbjct 2832 ATTTTGAGGGCTCTGAAGAGAGTCCCAAAATTGGCGATGGCGGAAATGCAAAGAAGCGAA 2891
Query 2891 AGAAGGCTTCTGATGATGTCACTGATCCCCGGGTCACTGATCCGCCAGTAGATGATGATG 2950
|||||||||||||||||||||||||||||| | || | || | ||||||||
Sbjct 2892 AGAAGGCTTCTGATGATGTCACTGATCCCC----C--TG-T-----AG-A--TGATGATG 2936
Query 2951 AAAGAAAGGCCTCTGGGAAGGATCACATGGGGGCTTTGGAGTCACCAAAAGTCATAACAC 3010
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 2937 AAAGAAAGGCCTCTGGGAAGGATCACATAGGGGCTTTGGAGTCACCAAAAGTCATAGCAC 2996
Query 3011 TCCAGTCATCATGTAAATCT--T-CTGGTACAGATGGTACATTGGATGGAAATGATGCTT 3067
|||||||||||||||||||| | ||||| || ||||| || ||| |||||||||| |||
Sbjct 2997 TCCAGTCATCATGTAAATCTACTTCTGGTGCACATGGTTCACTGGCTGGAAATGATACTT 3056
Query 3068 TTGGCTTGTATTCTATGGGCAGCCATATCTCTGGAATCCCAGAGGATATGTTAGCTAGTC 3127
||||||||||||||||||| | |||||||||||||| ||||||| |||||||||| |||
Sbjct 3057 ATGGCTTGTATTCTATGGGCGGTCATATCTCTGGAATTCCAGAGGGTATGTTAGCTGGTC 3116
Query 3128 AAGATTGGGGGAAAATACCGGATGAATCACAGAGGAGGCTCCACACTGTTTTAAAGCCGA 3187
| |||||| | |||||||||| |||||||||||||||||||||| |||||||||||| ||
Sbjct 3117 ATGATTGGAGAAAAATACCGGGTGAATCACAGAGGAGGCTCCACGCTGTTTTAAAGCTGA 3176
Query 3188 AGATGGCAAAACTTTGCCAAGTTTTGCATCTTTCAGATGCTTGCACAAGCATGGTCGGAA 3247
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3177 AGATGGTAAAACTTTGCCAAGTTTTGCATCTTTCAGATGCTTGCACAAGCATGGTCGAAA 3236
Query 3248 ATTTTCTCGAATATGTTATTGAAAATCACCGAATCTACGAAGAGCCAGCCACTACTTTTC 3307
||||||| |||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 3237 ATTTTCTTGAATATGTTATTGAAAATCACCGAATCTACGAAGAGCCAGCCACCACATTGC 3296
Query 3308 AGGCATTCCAGATAGCCCTGAGTTGGATTGCAGCCTTGTTGGTAAAGCAAATTCTTAGCC 3367
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3297 AGGCATTCCAGTTAGCCCTGAGTTGGATTGCAGCCTTGTTGGTAAAGCAAAATCTTAGCC 3356
Query 3368 ACAAAGAATCTCTGGTCCGTGCAAATTCTGAATTAGCTTTCAAATGCTCTAGAGTAGAGG 3427
|||||||||||||||||| |||||| ||||||||||||||| | ||||||||||||||||
Sbjct 3357 ACAAAGAATCTCTGGTCCCTGCAAAATCTGAATTAGCTTTCGATTGCTCTAGAGTAGAGG 3416
Query 3428 TGGATTATATTTATTCGATATTGTCCTGCATGAAGAGTCTGTTCCTGGAGCATACACAAG 3487
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3417 TGGATTATATATATTCGATATTGTCCTGCATGAAGAGTCTGTTCCTGGAGCGCACACAAG 3476
Query 3488 GTTTGCAGTTCGATTGCTTTGGTACTAATTCTAAACAGTCAGTGGTTAGCACAAAACTAG 3547
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 3477 GTTTGCAGTTCGATTGCTTTGGTACTAATTCTAAACAGTCAATGGTTAGCACACAACTAG 3536
Query 3548 TAAATGAAAGTCTCTCAGGGGCTACAGTGCGTGACGAAAAGATTAATACGAAGTCGATGC 3607
| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 3537 TGAATGAAAGTCTCTCAGGGGCTACAGTGCGTGAGGAAAAGAACAATACGAAGTCGATGC 3596
Query 3608 GAAATAGCTCAGAGGATGAAGAGTGCATGACTGAGAAGAGATGTAGCCATTATAGCACAG 3667
| ||||| |||| ||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 3597 GTAATAGTTCAGTGGATGAAGAATGCATTCCTGAGAAGAGATGTAGCCATTATAGCACAG 3656
Query 3668 CAACAAGAGATATCGAAAAGACTATTAGTGGCATAAAAAAGAAATACAAGAAGCAAGTGC 3727
|||||| |||| |||||||||||||||| | |||| ||||||||| |||||||||||||
Sbjct 3657 CAACAAAAGATGTCGAAAAGACTATTAGCGACATAGAAAAGAAATGGAAGAAGCAAGTGC 3716
Query 3728 AAAAGCTTGTACAAGAGCATGAGGAAAAGAAAATGGAGCTGTTAAATATGTATGCAGACA 3787
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 3717 AAAAGCTTGTACAAGAGCACGAGGAAAAGAAACTGGAGCTGTTAAATATGTATGCAGACA 3776
Query 3788 AGAAGCAGAAACTTGAAACTAGTAAAAGTGTGGAAGCAGCAGTAATTCGTATTACCTGTT 3847
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 3777 AGAAGCAGAAACTTGAAACTAGGAAAAATGTGGAAGCAGCAGTAATTCGTATTACCTGTT 3836
Query 3848 CACGGACCAGTACTCAAGTGGGTGATCTCAAACTGCTGGATCATAA-TTATGAAAGAAAG 3906
||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| |
Sbjct 3837 CACGGACCAGTACTCAAGTGGATGATCTCAAACTGCTGGATCATAAGTT-TGAAAGAATG 3895
Query 3907 TTTGATGAAATCAAAAGTGAGAAAAATGAATGCCTCAAAAGTCTGGAGCAAATGCACGAT 3966
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3896 TTTGATGAAATCAAAAGTGAGAAAAATGAATGCCTCAAAAGTCTGGAGCAAATGCACGAG 3955
Query 3967 GTTGCAAAGAAGAAGTTGGCTGAGGATGAAGCCTGTTGGATTAATCGGATAAAGAGCTGG 4026
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3956 GCTGCAAAGAAGAAGTTGGCTGAGGATGAAGCCTGTTGGATTAATCGGTTAAAGAGCTGG 4015
Query 4027 GCA---GCTAAATTAAAAGTTTGTGTTCCCATTCAAAGTGGCAATAACAAGCATTTTAGT 4083
||| ||||| |||||||||| ||||||||| |||||| |||| ||||||||| |||||
Sbjct 4016 GCACAAGCTAATTTAAAAGTTTTTGTTCCCATACAAAGTCGCAACAACAAGCATCTTAGT 4075
Query 4084 GGT-T---C--ATCAAACATTTCCCAAAATGCTCCTGATGTACAAATTTGCAAT-A-ATG 4135
||| | | ||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 4076 GGTCTATGCTCATCAAACATTTCCCAAAATGCTCCTGATGTACAAATTTGCAATGATATG 4135
Query 4136 CTAACGTTGAAGCTACTTACGCTGATACGAATTGCATGGCTTCCAAGGTTAATCAAGTGC 4195
|||||||||| |||||| ||||||||||||| || | | | | || |
Sbjct 4136 --AACGTTGAAGGTACTTATGCTGATACGAATT---TG-C--C-A-G---AA----G--- 4175
Query 4196 CAGAAGCAGAAAACACATTAGGAACCATGTCGGGTGGCAGCACTCAACAAGTTCATGAAA 4255
| | | | ||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 4176 -A-A-G-A-AAA-CACATTAGCAACCATGTCGGGTGGCAGCACTCAACAAGTTCATGAAA 4229
Query 4256 TGGTGGATGTAAGAAATGACGAGACAATGGATGTCTCAGCTTTGTCTCGTGAACAGC-T- 4313
||| || ||||||||||||| |||| ||||||||||||| ||||| || || ||||| |
Sbjct 4230 TGGAGGCTGTAAGAAATGACAAGACGATGGATGTCTCAGATTTGTTTCATGGACAGCCTA 4289
Query 4314 ------T-A------CAAAGAGCCAGTCCAATGAGCACGCTTCTATCACTGTGCCTGAGA 4360
| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4290 CAAAGATTATGGTTACAAAGAGCCAGTCCAATGAGCACGCTTCTATCACTGTGCCTGAGA 4349
Query 4361 TTTTGATTCCTGCTGACTGTCAAGAGGAATTTGCGGCCTTGAACGTGCATTTGTCAGAAG 4420
||||| ||||||||| |||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 4350 TTTTGGTTCCTGCTGGCTGTCAAGAGGAATTTGCGGCCGTGAACATGCATTTGTCAGAAA 4409
Query 4421 ACCAGAATTGTGACAGAATAACATCTGCGGCATCAGATGAAGATGTTTCATCAAGGGTGC 4480
|||||||||||||||||||||| ||||||| | |||||||||||||||| ||||||||||
Sbjct 4410 ACCAGAATTGTGACAGAATAACGTCTGCGGGACCAGATGAAGATGTTTCGTCAAGGGTGC 4469
Query 4481 CAGAGGTATCCCAGTCACTCGAAAATCTT------TCTGCCTCCCCCGAGTTTTCTCTAA 4534
||||||||||||||||||| ||||||||| ||||||||||||||||||||| | |
Sbjct 4470 CAGAGGTATCCCAGTCACTTGAAAATCTTGCAAAGTCTGCCTCCCCCGAGTTTTCTTTGA 4529
Query 4535 ATAGAGAGGAGGCTTTGGTTACAACAGAAAATAGA-AGAACAAGTCATGTGGGTTT-TGA 4592
||||||||||||||||||||||||||||||||| | |||||||||||||||| ||| |||
Sbjct 4530 ATAGAGAGGAGGCTTTGGTTACAACAGAAAATA-ATAGAACAAGTCATGTGG-TTTCTGA 4587
Query 4593 TACTGATAACATTTTGGACCAGCAGAATAGAGAAGATTGTTCTCTTGACCAAGAGATTCC 4652
||||||||||||||| |||||||||||||| |||| |||||||||||||||||| |||||
Sbjct 4588 TACTGATAACATTTTTGACCAGCAGAATAGGGAAGCTTGTTCTCTTGACCAAGATATTCC 4647
Query 4653 TGACGAGTTAGCGATGCCTGTGCAACATCTTGCGTCTGTGGTAGAGACTAGGGGTGCTGC 4712
||||||||||||| ||||| ||| ||||| |||||||||||||||||||||| ||||| |
Sbjct 4648 TGACGAGTTAGCGTTGCCTATGCCACATCCTGCGTCTGTGGTAGAGACTAGGAGTGCTAC 4707
Query 4713 TGAATCTGATCAGTATGGTCAAGATATATGTCCTATGCCTTCTTCACTGGCTGGAAAGCA 4772
||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 4708 TGAATCTGATCAGGATGGTCAAGATATATCTCCTATGCCTTCTTCTCTGGCTGGAAAGCA 4767
Query 4773 ACCTGACCCAGCAGCAAACAC--TGAGAGCGAAAATCTTGAAGAAGCAATTGAGCCTCAG 4830
||||||||||||||||||||| || | || |||||||||||| ||||||||||| ||||
Sbjct 4768 ACCTGACCCAGCAGCAAACACCCTG-G-GCCAAAATCTTGAAGCAGCAATTGAGCTTCAG 4825
Query 4831 TCTGCTGGTTCAGAAACAGTAGAGACTACTGATTTTGCTGCATCACATCAGGGTGATCAA 4890
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 4826 TCTGCTGGATCAGAAACAGTAGAGACCACTGATTTTGCTGCATCACATCAGGGTGATCAA 4885
Query 4891 GTTACATGTCCTTTGCTATCTTCACCGACTGGAAATCAGCCTGCGCCAGAAGCAAATATT 4950
|||||||||||||||| |||||||||| |||||||||||||||| ||||||||||| |||
Sbjct 4886 GTTACATGTCCTTTGCCATCTTCACCGGCTGGAAATCAGCCTGCACCAGAAGCAAACATT 4945
Query 4951 G-AAGGCCAAAATATCAACACATCAGCTGAGCCCCATGTAGCGGGTCCAGATGCAGTAGA 5009
| ||| |||||||||||| ||||||||||||||||||||||| ||| |||| ||||||||
Sbjct 4946 GGAAG-CCAAAATATCAATACATCAGCTGAGCCCCATGTAGCTGGTTCAGAGGCAGTAGA 5004
Query 5010 GAGTGGTGATTATGCAGTAAT-AGATCAGGAAACAATGGGTGCTCAGGATGCATGCTCTC 5068
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 5005 GAGTGGTGATTATGCAGTA-TCAGATCAGGAAACAATGGGTGCTCAGGATGCATGCTCTC 5063
Query 5069 TGCCATCTGGATCGGTTGGAACTCAGTCTGACCTAGGAGCAAACATTGAGGGTCAAAATG 5128
||||||||| |||||||||||||||||||||||| |||||||||| |||||| ||||||
Sbjct 5064 TGCCATCTGCATCGGTTGGAACTCAGTCTGACCTTGGAGCAAACAATGAGGGCCAAAATA 5123
Query 5129 TCACAACAGTGGCTCAACTTCCCACAGATGGATCAGATGCAGTTGTAACCGGTGGATCTC 5188
|||||||||||||||| |||||||||||||||||||||||||| | ||| ||||||||||
Sbjct 5124 TCACAACAGTGGCTCAGCTTCCCACAGATGGATCAGATGCAGTAGAAACTGGTGGATCTC 5183
Query 5189 CTGTATCAGATCAGTGTGCCCAGGATGCATCTCCTATGCCATTATCTTCGCCTGGAAATC 5248
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 5184 CTGTATCAGATCAGTGTGCTCAGGATGCATCTCCTATGCCATTATCTTCGCCTGGAAATC 5243
Query 5249 ACCCTGATACAGCAGTTAATATCGAGGGTTTAGATAACACATCAGTAGCTGAGCCTCATA 5308
||| ||||||||||||||| || ||||||||| |||||||| || ||||||| |||||||
Sbjct 5244 ACCTTGATACAGCAGTTAACATTGAGGGTTTAAATAACACAACAATAGCTGAACCTCATA 5303
Query 5309 TAAGTGGATCAGATGCATGTGAAATGGAAATTTCAGAACCTGGTCCCCAAGTAGAGCGGT 5368
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 5304 TAAGTGGATCAGATGCATGTGAAATGGAAATTGCAGAACCTGGTCCCCAAGTAGAGCGGT 5363
Query 5369 CAACCTTTGCAAATCTTTTCCATGAAGGTGGCGTGGAGCATTCAGCAGGTGTAACAGCTC 5428
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 5364 CAACCTTTGCAAATCTTGTCCATGAAGGTGGCGTGGAGCATTCAGCTGGTGTAACAGCTC 5423
Query 5429 TTGTTCCATCACTTCTTAACAATGGTACGGAACAGATTGCCGTTCAACCTGTTCCTCAAA 5488
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 5424 TTGTTCCATCACTTCTCAACAATGGTACGGAACAGAGTGCCGTTCAACCTGTTCCTCAAA 5483
Query 5489 TACCTTTCCCTGTGTTCAACGACCCGTTTCTGCATGAACTGGAGAAGTTGCGGAGAGAAT 5548
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 5484 TACCTTTCCCTGTGTTCAATGACCCGTTTCTGCATGAACTGGAGAAGTTGCGGAGAGAAT 5543
Query 5549 CAGAGAACTCAAAGAAGACTTTTGAAGaaaaaaaaTCAATCTTGAAAGCTGAACTCGAGA 5608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5544 CAGAGAACTCAAAGAAGACTTTTGAAGAAAAAAAATCAATCTTGAAAGCTGAACTCGAGA 5603
Query 5609 GGAAGATGGCTGAAGTACAAGCAGAGTTTCGAAGAAAATTTCATGAGGTAGAAGCCGAGC 5668
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 5604 GGAAGATGGCTGAAGTACAAGCAGAGTTTCAAAGAAAATTTAATGAGGTAGAAGCCGAGC 5663
Query 5669 ATAACACCAGAACGACAAAGATAGAGAAGGATAAGAATCTTGTTATAATGAACAAACTGT 5728
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 5664 ATAACACAAGAACGACAAAGATAGAGACGGATAAGAATCTTGTTATAATGAACAAACTGT 5723
Query 5729 TGGCGAATGCGTTCTTGTCCAAATGTACTGACAAGAAGGTATCTCCCTCAGGAGCTCCAA 5788
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 5724 TGGCGAATGCGTTCTTGTCCAAATGTACTGACAAGAAGGTATCTCCCTCAGCAGCTCCAA 5783
Query 5789 GGGGTAAAATTCAGCAGCTAGCACAGAGAGCAGCACAAGTGAGTGCACTGAGAAATTACA 5848
|||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 5784 GGGGTAGAATTCAGCAGCTAGCACAGAGAGCAACACAAGTGAGCGCACTGAGAAATTACA 5843
Query 5849 -T--T--G-CTCCTCAGCAGCTTCAGGCATCTTCTTTTCCTGCTCCTGCTCTGGTTTCGG 5902
| | | ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 5844 GTGCTTCGGCTCCTCAGCAGCTTCAGGCATCTTCTTTTCCTGCTCCTGCTCTGGTTCCGG 5903
Query 5903 CTCCTCTGCAACTTCAGCAATCATCATTTCCTGCTCCTGGTCCGGCTCCTCTGCAGCCTC 5962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5904 CTCCTCTGCAACTTCAGCAATCATCATTTCCTGCTCCTGGTCCGGCTCCTCTGCAGCCTC 5963
Query 5963 AGGCATCTTCGTTTCCTTCTTCAGTCTCTCGTCCATCAGCCCTTCTTCTGAATTTTGCGG 6022
|||||||||||||| |||||||||||||||||||||||||||||| |||||||| || |
Sbjct 5964 AGGCATCTTCGTTTGCTTCTTCAGTCTCTCGTCCATCAGCCCTTCCTCTGAATTCCGCAG 6023
Query 6023 TCTGTCCAATGCCTCAGCCCAGACAGCCTCTCATATCCAACATAGCTCCAACTCCATCAG 6082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6024 TCTGTCCAATGCCTCAGCCCAGACAGCCTCTCATATCCAACATAGCTCCAACTCCATCAG 6083
Query 6083 TTACTCCTGCAACAAATCCAGGT-C---TGC--GT-T-C--TC-C-TGCACCACACCTAA 6130
|| | |||||| ||||||||| | | ||| || | | || | ||| ||||||||||
Sbjct 6084 TTTCCCCTGCAGCAAATCCAGTTGCCAGTGCAAGTCTGCGATCTCCTGCGCCACACCTAA 6143
Query 6131 ACTCATATAGACCATCCTCTTCAACTCCCGTCGCCACAGCTACTCCAACCTCGTCAGTGC 6190
|||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 6144 ACTCATATAGACAATCCTCTTCCACTTCCGTCGCCACAGCTACTCCAACCTCGTCAGTGC 6203
Query 6191 CTCCTCAAGCTTTGACATATTCAGCTGTGTCAATTCAG---CAGCAGCAAGAACAACAAC 6247
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
Sbjct 6204 CTCCTCAAGCTTTGACATATTCAGCTGTGTCAATTCAGAAGCAGCAGCAAGAAAAACAGC 6263
Query 6248 CGCAACAGAGCTTGAGCAGTGGA---TTGCAGA-GCAACAATGAAGTGGTTTGTCTTTCT 6303
|||||||||||||||| |||||| ||||||| | |||||||| |||||||||||||||
Sbjct 6264 CGCAACAGAGCTTGAGGAGTGGAGGATTGCAGATG-AACAATGACGTGGTTTGTCTTTCT 6322
Query 6304 GACGACGAGTGACCTAAGAGGAGAGATGGTTAGGGT 6339
|||||||||||| |||| |||||||||| |||||||
Sbjct 6323 GACGACGAGTGAGCTAATAGGAGAGATGTTTAGGGT 6358
Score = 1269 bits (687), Expect = 0.0
Identities = 980/1114 (88%), Gaps = 49/1114 (4%)
Strand=Plus/Plus
Query 84 CCGTACATAATCCTGCGAACCCAATTCTCGTCTTCTTCAAAC-T-CAGTTTTCCGAAACC 141
||||||||||| ||| ||||||| |||||||||||||||||| | | ||||||||||||
Sbjct 1 CCGTACATAATTCTGTGAACCCAGTTCTCGTCTTCTTCAAACTTAAAATTTTCCGAAACC 60
Query 142 CCAAACACCGCGAGGATTGCATGGCCTGAAGAACCACTTAATCGAGAATTGTGCTGGAAT 201
|||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 61 CCAAACACCGTGAGGATTGCATGGCCTGAAGAAGCGCTTAATCGAGAATTGTGCTGGAAT 120
Query 202 TCTC-A-----A-ATTTTCCCTCGCGTTTTTCTTTCACACTCTCGGAATCGGAAATTTCC 254
|||| | | ||||| ||||||| ||| ||||||||||||||||||||||||| ||
Sbjct 121 TCTCAATTTCCAGATTTTACCTCGCG--TTT-TTTCACACTCTCGGAATCGGAAATTGCC 177
Query 255 ACCAAGCTCCGTCAAGCGATAGATTCTGACAATTACACACTTTCGCGCAGTGAATATGAA 314
|||||||| ||| ||||||||||||||||| | | | ||||||||||||| |||||||||
Sbjct 178 ACCAAGCT-CGTGAAGCGATAGATTCTGACCA-T-CTCACTTTCGCGCAGAGAATATGAA 234
Query 315 GAAAGATGAAAAGATTGGTTTGACGGGGAGAACCATTTACACCAGATCCCTAGCAGCTTC 374
|||||||||||||| | ||| | ||||||||||||||| |||||||||||||||||||||
Sbjct 235 GAAAGATGAAAAGAATAGTTCGGCGGGGAGAACCATTTGCACCAGATCCCTAGCAGCTTC 294
Query 375 AATTCCTGCCTCAGTTGAACAAGAAACCCCTGGTTTGAGGAGGTCAAGCCGGGG-GACAC 433
||||||| |||||| ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 295 AATTCCTACCTCAGCTGAACAAGAAACCCCTGGTTTGAGGAGGTCAAGCCGGGGAG-CAC 353
Query 434 CATCTACGAAGGTAATAACTCCAGCTTCTGCTACTAGAAAGTCAGAGAGACTGGCTCCCT 493
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 CATCTACGAATCTAGTAACTCCAGCTTCTGCTACTAGAAAGTCAGAGAGACTGGCTCCCT 413
Query 494 CACCTGCTTCAGTTTCAAAAAAGTCCGGTGGAATCGTCAAGAATTCCACACCAAGTTCTT 553
|||||||||| ||| | | ||||||||||||||| | ||||||| |||||||||| ||
Sbjct 414 CACCTGCTTCTGTTGCGATAAAGTCCGGTGGAATGGAGAAGAATTACACACCAAGTCCTC 473
Query 554 TGCGAAGGTCCAATAGGGGGAAGACTGAAGTATCCTTGCAGAGTTCCAAAGGATCAGATA 613
||||||||||||||||||| |||| || |||||||||||||| |||||||||||||||||
Sbjct 474 TGCGAAGGTCCAATAGGGGAAAGAATGTAGTATCCTTGCAGAATTCCAAAGGATCAGATA 533
Query 614 ATTCTATCAGGAAAGGAGATACTTCACCGGATATTGAGCAGAGAAAGGATA---G----- 665
||||| |||||| | ||| |||||| |||||||||||||||| ||||||| |
Sbjct 534 ATTCTGGCAGGAACGCAGACACTTCATCGGATATTGAGCAGAGGAAGGATAAAAGGAAAA 593
Query 666 ----TGTTGAAGAGTCGACAGATAAGATCAA------G---CCTATAATGTCAGCCCGAA 712
|||||||||||||||| |||||||||| | ||| |||||||||||||||
Sbjct 594 ACAGTGTTGAAGAGTCGACAAATAAGATCAACAAACAGGGGCCTCTAATGTCAGCCCGAA 653
Query 713 GTTACAGGGCATTGTTTAGAGGGAAGCTCAAGGAATCTGAGGCATTAGTTGATGCTTCCC 772
||| ||| || ||||||||||||||||||||||| || |||||||||||||||| ||| |
Sbjct 654 GTTTCAGAGCGTTGTTTAGAGGGAAGCTCAAGGACTCCGAGGCATTAGTTGATGTTTCTC 713
Query 773 CAAATGAAGAGGAACTAGTAGTTGTTGGTTGTTCTCGCCGCATACCTGCAGGCAATGATG 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 CAAATGAAGAGGAACTAGTAGTTGTTGGTTGTTCTCGCCGCATACCTGCAGGCAATGATG 773
Query 833 ATGTTCAAGGTAAAACAGATTGTCCACCACCTGCAGATGCAGGATCAAAAAGGCTGCCAG 892
||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 774 ATGCTCAAGGTAAAACAGATTGTCCCCCACCTGCAAATGCAGGATCAAAAAGGCTGCCAG 833
Query 893 TTGACGAAACTAGTTTGGACAAGGGCACTGATTTTCCTTTGAAATC-AGTTACGGAGACC 951
||| ||||||||||||||| ||||||||||| |||||||||||||| | ||||||| |||
Sbjct 834 TTGGCGAAACTAGTTTGGAGAAGGGCACTGACTTTCCTTTGAAATCGA-TTACGGACACC 892
Query 952 GAGAAGATAGTGCTTGATGCATCCCCCATAGTTGAAACTGGGGATGACAGTGTTATAGGT 1011
|| || || |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 893 GAAAATATGGTGCTTGATGCATCCCCCATAGTTGAAACTGGGGATGACAGTGTAATTGGT 952
Query 1012 TCACCATCTGAGAATTTAGAGACACAAAAGCTTCAAGATGGTAAGACAGATTGTTCACCA 1071
|| |||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||
Sbjct 953 TCTCCATCTGAGAATTTAGAGACGCAAAAGCTTCAAGATGGTAACACAGATTGTCCACCA 1012
Query 1072 CCTGCAAATGCAGAATCGAAAACGCT-GCCAGTTGGTGAAACTAGTTT-AGAAAA-AGAA 1128
||||||||| ||||||| |||| ||| | | | ||| | | | | | |||| |||
Sbjct 1013 CCTGCAAATACAGAATCAAAAAGGCTCGTTA-TAGGTTCACC-A-TCTGAGAAGTTAGAG 1069
Query 1129 TATCCACAAAAGTTTCAAGATGATAACACAGATT 1162
| | ||||||| ||||||||| |||||||||||
Sbjct 1070 -A-C-ACAAAAGCTTCAAGATGGTAACACAGATT 1100
Score = 226 bits (122), Expect = 2e-57
Identities = 178/205 (87%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 1152 TAACACAGATTGTCTACCACCTGCAAATGCAGAATCAAAAAGGCTGCCAGTTGGCGAAAC 1211
||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 784 TAAAACAGATTGTCCCCCACCTGCAAATGCAGGATCAAAAAGGCTGCCAGTTGGCGAAAC 843
Query 1212 TAGTTTAGAAAAGGACACTGATTTTCCTTTGAAATCAACTACGGAGACTGGAAAGATGGT 1271
|||||| || |||| |||||| |||||||||||||| | |||||| || | ||| |||||
Sbjct 844 TAGTTTGGAGAAGGGCACTGACTTTCCTTTGAAATCGATTACGGACACCGAAAATATGGT 903
Query 1272 TCTTTATGCATCCCCCATAGTTGAAACTAGGGATGACAGCGTTATATG-TTCACCATCT- 1329
||| ||||||||||||||||||||||| |||||||||| || || || ||| ||||||
Sbjct 904 GCTTGATGCATCCCCCATAGTTGAAACTGGGGATGACAGTGTAAT-TGGTTCTCCATCTG 962
Query 1330 ACAAATTTAGAAACCCAAAAGCTTC 1354
| || |||||| || ||||||||||
Sbjct 963 AGAA-TTTAGAGACGCAAAAGCTTC 986
Score = 102 bits (55), Expect = 3e-20
Identities = 59/61 (97%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 1003 GTTATAGGTTCACCATCTGAGAATTTAGAGACACAAAAGCTTCAAGATGGTAAGACAGAT 1062
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1040 GTTATAGGTTCACCATCTGAGAAGTTAGAGACACAAAAGCTTCAAGATGGTAACACAGAT 1099
Query 1063 T 1063
|
Sbjct 1100 T 1100
> Ahg913105 jgi|Araly1|913105|Al_scaffold_0001_3359
Length=1440
Score = 518 bits (280), Expect = 3e-145
Identities = 567/695 (82%), Gaps = 62/695 (9%)
Strand=Plus/Plus
Query 5660 AAGCCGAGCATAACACC---A-GA-A--CGACAAAGATAGAGAAG-GA-TAAGAATCTTG 5710
||||||| ||||||||| | || | |||||||||||||| | || |||||||||||
Sbjct 769 AAGCCGAACATAACACCAGAACGACAGTCGACAAAGATAGAG--GCGAGTAAGAATCTTG 826
Query 5711 TTATAATGAACAAACTG-TTGGCG-AATGCGTTCTTGTCCAAATGTACTGACAAGAAGGT 5768
| ||||||||||||||| | | | | ||||||||||||||||||||| ||||||||||
Sbjct 827 TGATAATGAACAAACTGATAAGAGTATTGCGTTCTTGTCCAAATGTACCGACAAGAAGGC 886
Query 5769 ATCTCCCTCAGGAGCTCCAAGGGGTAAAATTCAGCAGCTAGCACAGAGAGCAGCACAAGT 5828
||||||||||| |||||||| | | ||| |||||||||||||||||||||||
Sbjct 887 ATCTCCCTCAGCAGCTCCAA---G------T--GCACCTAGCACAGAGAGCAGCACAAGT 935
Query 5829 GAGTGCACTGAGAAATTACATTGCTCCT-CAGCAGCT--T-CAG----GCATCTTC--TT 5878
|| || ||||||||||||| ||||||| | | ||| | | | ||| |||| |
Sbjct 936 GAACGCGCTGAGAAATTACACTGCTCCTGCTCCTGCTCCTGCGGCTCTGCAGCTTCAGTC 995
Query 5879 TTC-CTG-CTCCTGCT-CTGGTTTCGGCTCCTCTGCAACTTCA-GCAATCATCATTTCCT 5934
|| || |||| || ||| | | ||||| |||||| ||||| || ||| ||||||||
Sbjct 996 ATCTTTGTTTCCTACTCCTGCTCT-GGCTCTTCTGCAGCTTCAGGC-ATCGTCATTTCC- 1052
Query 5935 GCTCCTGGTCCGGCTCCTCTGCAGCCTCAGGCATCTTCGTTTCCTTCTTCAGTCTCTCGT 5994
| | |||||||| | ||||||||||||||||||| ||| ||||||||||||| |||
Sbjct 1053 G-----GCTCCGGCTCTTTTGCAGCCTCAGGCATCTTCATTTACTTCTTCAGTCTCGCGT 1107
Query 5995 CCATCAGCCCTTCTTCTGAATTTTGCGGTCTGTCCAATGCCTCAGCCCAGACAGCCTCTC 6054
||||||| ||||| |||||||| | ||||||| |||||||||||||| |||||||| |||
Sbjct 1108 CCATCAGGCCTTCCTCTGAATTCTACGGTCTGCCCAATGCCTCAGCCAAGACAGCCACTC 1167
Query 6055 ATATCCAACATAGCTCCAACTCCATCAG-TTACTCCTG---C-AA-CAAA-T-CC-A-G- 6103
|||||||||| ||||||||||| |||| || |||||| | || |||| | || | |
Sbjct 1168 ATATCCAACACGGCTCCAACTCCGTCAGATT-CTCCTGCAACTAATCAAATTGCCAATGC 1226
Query 6104 --GTCTGCGTTCTCCTGCACCACACCTAAACTCATATAGACCATCCTCTTCAACTCCCGT 6161
|||| | |||||||||||| ||| ||| ||||||||| ||| || ||||| ||||||
Sbjct 1227 AAGTCTACATTCTCCTGCACCGCACTTAAGCTCATATAGGCCAGCCCCTTCAGTTCCCGT 1286
Query 6162 CGCCACAGCTACTCCAACCTCGTCAG-TGCCTCCTCAAGCTTTGACATATTCAGCTGTGT 6220
| ||||||||||| ||||| ||| | |||||||||||||||| |||||||||||||| |
Sbjct 1287 AGACACAGCTACTCTAACCTTGTC-GTTGCCTCCTCAAGCTTTAACATATTCAGCTGTAT 1345
Query 6221 CAATTCAGCAGCAGCAAGAACAACAACCGCAACAGAGCTTGAGCAGTGGATTGCAGAGCA 6280
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
Sbjct 1346 TAATTCAGCAGCAGCAAGAACAACAACCGCAACAAAGCTTGAGCAGTGGATTGCAGGGAA 1405
Query 6281 ACAATGAAGTGGTTTGTCTTTCTGACGACGAGTGA 6315
||||||| |||||||||||||||||||||||||||
Sbjct 1406 ACAATGATGTGGTTTGTCTTTCTGACGACGAGTGA 1440
Score = 270 bits (146), Expect = 8e-71
Identities = 174/187 (93%), Gaps = 4/187 (2%)
Strand=Plus/Plus
Query 5396 GTGGCGTGGAGCATTCAGCAGGTGTAACAGC-TCTTGTTCCATCACTTCTTAACAATGGT 5454
|||| ||||||| |||||||||||| ||||| || ||||||||||||||| |||||||||
Sbjct 467 GTGGTGTGGAGCTTTCAGCAGGTGTTACAGCTTC-TGTTCCATCACTTCTAAACAATGGT 525
Query 5455 AC-GGAACAGATTGCCGTTCAACCTGTTCCTCAAATACCTTTCCCTGTGTTCAACGACCC 5513
|| || ||||| |||||||||||||||||||||||||| ||||| ||||||| |||||||
Sbjct 526 ACTGG-ACAGAGTGCCGTTCAACCTGTTCCTCAAATACTTTTCCGTGTGTTCGACGACCC 584
Query 5514 GTTTCTGCATGAACTGGAGAAGTTGCGGAGAGAATCAGAGAACTCAAAGAAGACTTTTGA 5573
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 585 GTTTCTGCATGAACTGGAGAAGTTGCAGAGAGAATCAGAGAACTCAAAGAAGACTTTTGA 644
Query 5574 AGaaaaa 5580
|||||||
Sbjct 645 AGAAAAA 651
Score = 202 bits (109), Expect = 3e-50
Identities = 140/154 (91%), Gaps = 5/154 (3%)
Strand=Plus/Plus
Query 3784 GACAAGAAGCAGAAACTTGAAACTAG-TAAAAGTGTGGAAGCAGCAGTAATTCGTATTAC 3842
||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||| |
Sbjct 94 GACAAGAAGCAAAAACTTGAAACTAGAAAAAAGT-TGGAAGCAGCAGTAATTCGTATTTC 152
Query 3843 CTGTTCACGGACCAGTACTCAAGTGGGTGATCTCAAACTGCTGGATCAT-AATTATGAAA 3901
| ||||||||||| |||| ||||||| ||||||||||| ||||||| || |||| |||||
Sbjct 153 CAGTTCACGGACCGGTACCCAAGTGGATGATCTCAAACGGCTGGATGATGAATT-TGAAA 211
Query 3902 GAAAGTTTGATGAAATCAAAAGTGAGAAAAATGA 3935
|||||||||||||||||||||||||||||| |||
Sbjct 212 GAAAGTTTGATGAAATCAAAAGTGAGAAAA-TGA 244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 248401778971
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5