BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G08160.1 Length=917 Score E Sequences producing significant alignments: (Bits) Value Ahg470877 jgi|Araly1|470877|fgenesh2_kg.1__831__AT1G08160.1 1271 0.0 > Ahg470877 jgi|Araly1|470877|fgenesh2_kg.1__831__AT1G08160.1 Length=846 Score = 1271 bits (688), Expect = 0.0 Identities = 798/848 (94%), Gaps = 20/848 (2%) Strand=Plus/Plus Query 6 AATCTTTGCTCTCTATCCTTTCCAAGCAATTAACT-GAAGTCCATCAAAACCTTCTCTGA 64 |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| Sbjct 1 AATCTTTGCTCTCTATCCTTTCCAAGAAATTAACTAGAAGTCCATCAAAATCTTCTCTGA 60 Query 65 CAATGGTGCCTCCAAACCCAGCCCACCAACCGGCTCGGCGAACGCAACCGCAACTGCAAC 124 ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 61 CAATGGTGCCTCCAAACCCAGCCCACCAACCGGCTCGGCGAACGCAACCGC-A--GCAA- 116 Query 125 CCCAATCGCAACCTCGAGCACAACCCCTGCCGGGCAGGCGTATGAACCCCGTCCTATGCA 184 || ||| | | | | |||||||| ||||||||||||||||||||||||||||||| Sbjct 117 -CC--TCG--A-C-C--G--CAACCCCTTCCGGGCAGGCGTATGAACCCCGTCCTATGCA 165 Query 185 TCATCGTCGCCCTCGTCCTCTTGGGACTCCTCGTGGGTCTCGCCATATTGATCACATACC 244 ||||||| |||||||||||||||||||| || ||||||||||||||||| |||||||||| Sbjct 166 TCATCGTTGCCCTCGTCCTCTTGGGACTACTTGTGGGTCTCGCCATATTAATCACATACC 225 Query 245 TCACACTCAGGCCAAAGCGACTCATCTACACGGTAGAAGCCGCGTCGGTCCAAGAGTTTG 304 ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 226 TCACACTTAGGCCAAAACGACTCATCTACACGGTAGAAGCCGCGTCGGTCCAAGATTTTG 285 Query 305 CTATAGGCAACAATGACGATCACATCAACGCAAAATTCAGCTACGTGATCAAATCATACA 364 ||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| Sbjct 286 CTATAGGCAACAATGACGATCACATTACCGCAAAATTCAGCTATGTGATCAAATCATACA 345 Query 365 ACCCGGAGAAACATGTCTCCGTAAGATACCACTCCATGCGTATCTCCACGGCTCATCATA 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 346 ACCCGGAGAAACATGTCTCCGTAAGATACCACTCCATGCGTATCTCCACGGCTCATCATA 405 Query 425 ACCAGTCCGTGGCTCACAAAAATATCTCTCCTTTCAAGCAACGTCCTAAGAACGAGACTA 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 406 ACCAGTCCGTGGCTCACAAAAATATCTCTCCTTTCAAGCAACGTCCTAAGAACGAGACTA 465 Query 485 GGATTGAGACGCAGCTTGTGTCCCACAATGTGGCACTGTCTAAGTTCAATGCCAGGGACT 544 ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 466 GGATTGAGACGCAGCTTGTGTCCAAGAATGTGGCACTGTCTAAGTTCAATGCCAGGGACT 525 Query 545 TAAGGGCTGAAAAATCAAAAGGGACGATCGAAATGGAAGTGTATATAACGGCTAGAGTGA 604 | |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 526 TGAGGGCTGAAAAATCAAAAGGAACGATCGAAATGGAAGTGTATATAACAGCTAGAGTGA 585 Query 605 GCTACAAGACGTGGATTTTCCGGTCGAGAAGACGTACGTTGAAGGCTGTGTGTACGCCGG 664 |||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| | Sbjct 586 GCTACAAGACGTGGATTTTCTGGTCGAGGAGACGTACTTTGAAGGCTGTGTGTACGCCTG 645 Query 665 TAATGATCAACGTTACATCAAGCTCGTTGGATGGATTCCAGAGAGTGTTATGCAAAACTC 724 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 646 TAATGATCAACGTTACATCAAGCTCGTTGGATGGATTCCAGAGAGTCTTATGCAAAACTC 705 Query 725 GTCTTTAGTTTGATTTATCCTCATCTTGAATTGGTTTCATTTGTGTGCAAAATTTGCTAT 784 ||||||||||||| |||| | |||||| ||||||||||||||||||||||||||||||| Sbjct 706 GTCTTTAGTTTGAATTATTATTATCTTGTATTGGTTTCATTTGTGTGCAAAATTTGCTAT 765 Query 785 ATGTGACATTGATTGATtgtgtgtgtgtttttcctttt-taaatttcct-ctttggtttt 842 ||||| | ||||||||||||||||||||||||| |||| |||||||| | |||||||||| Sbjct 766 ATGTGCCCTTGATTGATTGTGTGTGTGTTTTTC-TTTTCTAAATTTC-TGCTTTGGTTTT 823 Query 843 gttctttt 850 |||||||| Sbjct 824 GTTCTTTT 831 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34005641964 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5