BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G08230.2 Length=1461 Score E Sequences producing significant alignments: (Bits) Value Ahg910527 jgi|Araly1|910527|Al_scaffold_0001_781 1989 0.0 > Ahg910527 jgi|Araly1|910527|Al_scaffold_0001_781 Length=1356 Score = 1989 bits (1077), Expect = 0.0 Identities = 1269/1362 (93%), Gaps = 12/1362 (1%) Strand=Plus/Plus Query 45 atgggtggagaa--gaga-gatcaggagatggagaaaaaagaggggaagaagTAGTTGAT 101 |||||||| ||| || | |||||||||| ||||||||||||||||| | | ||||| Sbjct 1 ATGGGTGGGGAAGGGATATCATCAGGAGATATAGAAAAAAGAGGGGAAG-A-T-GTTGAC 57 Query 102 GCTGGTTCTCTCTTCGTCCTTAAATCCAAAGGGACATGGTGGCACTGCGGATTCCACTTG 161 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 58 GCTGGTTCTCTCTTCGTCCTTAAATCCAAAGGGACGTGGTGGCACTGCGGATTCCACTTG 117 Query 162 ACGACGTCTATAGTGGCGCCTGCGCTACTGAGTCTACCGTACGCCTTCAAGTTCTTAGGA 221 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 118 ACGACGTCTATAGTGGCGCCGGCGCTACTGAGTCTACCGTACGCTTTCAAGTTCTTAGGA 177 Query 222 TGGGCTGCCGGGATATCTTGTCTGGTCGGAGGAGCAGCCGTTACTTTCTACTCGTACACT 281 |||| |||||| ||||| |||||||| |||||||||||||| ||||||||||||||||| Sbjct 178 TGGGTTGCCGGAATATCCTGTCTGGTGGGAGGAGCAGCCGTCACTTTCTACTCGTACACC 237 Query 282 CTTCTTTCTCTT-ACTCTCGAACACCACGCTTCTCTCGGCAACCGTTACCTCCGCTTCCG 340 ||||||||| || || ||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 238 CTTCTTTCT-TTAACACTCGAACACCACGCTTCCCTCGGCCACCGTTACCTCCGCTTCCG 296 Query 341 TGACATGGCTCATCACATCCTCAGTCCGAAATGGGGAAGGTACTACGTTGGACCAATACA 400 |||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 297 TGACATGGCTCACCACATCCTCGGTCCGAAATGGGGGAGGTACTACGTTGGACCAATACA 356 Query 401 AATGGCGGTGTGCTATGGTGTGGTTATTGCCAATGCGCTCTTGGGAGGGCAATGCCTAAA 460 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 357 AATGGCGGTGTGCTATGGTGTGGTTATTGCGAATGCGCTCTTGGGAGGGCAATGCCTTAA 416 Query 461 GGCAATGTACTTGGTAGTGCAGCCAAATGGGGAAATGAAACTCTTTGAGTTTGTGATTAT 520 ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 417 GGCAATGTATTTGGTAACGCAGCCAAATGGGGAAATGAAACTCTTTGAGTTTGTGATTAT 476 Query 521 TTTTGGATGCTTACTTTTGGTTTTGGCACAATTCCCATCCTTTCACTCTCTACGATACAT 580 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 TTTTGGATGCTTACTCTTGGTTTTGGCACAATTCCCATCCTTTCACTCTCTACGATACAT 536 Query 581 CAACTCACTGTCTCTCCTCCTCTGCCTCCTCTACAGTGCTTCTGCCGCTGCTGCATCCAT 640 ||||||| | ||||| ||||| ||||| ||||| |||||||| ||||| |||||||| || Sbjct 537 CAACTCATTTTCTCTGCTCCTATGCCTGCTCTATAGTGCTTCCGCCGCAGCTGCATCGAT 596 Query 641 CTACATTGG-AAAAGAACCAAATGCACCAGAGAAGGACTATACTATAGTTGGTGATCC-A 698 ||||||||| ||||| | |||| |||||||||||||||||||||||||||||||| || | Sbjct 597 CTACATTGGAAAAAG-ATCAAACGCACCAGAGAAGGACTATACTATAGTTGGTGA-CCAA 654 Query 699 GAAACTAGAGTGTTTGGAATCTTTAATGCTATGGCTATTATTGCTACTACATACGGCAAT 758 ||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 655 GAAACTAAAGTGTTTGGAATCTTCAATGCTATGGCTATTATTGCCACTACATACGGCAAC 714 Query 759 GGCATTATACCTGAAATTCAGGCAACAATATCGGCACCAGTGAAAGGAAAAATGATGAAA 818 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 715 GGCATTATACCCGAAATTCAGGCAACAATATCGGCACCAGTGAAAGGAAAAATGATGAAA 774 Query 819 GGGTTGTGTATGTGTTACCTTGTAGTAATAATGACATTTTTCACAGTAGCCATCACAGGA 878 |||||||||||||||||||||||||| ||| |||||| |||||| ||||| ||||| ||| Sbjct 775 GGGTTGTGTATGTGTTACCTTGTAGTGATAGTGACATATTTCACTGTAGCAATCACCGGA 834 Query 879 TATTGGGCATTCGGTAAAAAAGCCAATGGACTTATCTTCACCAATTTCTTAAATGCCGAG 938 ||||||||||| ||||| |||||||||||| |||| |||||||||||||||||| ||||| Sbjct 835 TATTGGGCATTTGGTAACAAAGCCAATGGATTTATATTCACCAATTTCTTAAATACCGAG 894 Query 939 ACAAACCATTACTTTGTCCCTACTTGGTTTATTTTTCTCGTCAATCTCTTCACTGTCCTT 998 ||| |||||||||| || ||||||||||||||||||||||||||||||||||| || ||| Sbjct 895 ACAGACCATTACTTAGTTCCTACTTGGTTTATTTTTCTCGTCAATCTCTTCACCGTTCTT 954 Query 999 CAACTTTCGGCCGTTGCTGTGGTATACCTACAACCTATAAACGATATTTTGGAAAGTGTG 1058 ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 955 CAACTTTCGGCTGTTGCTGTGGTATACCTACAGCCTATAAACGATATTTTGGAAAGTGTA 1014 Query 1059 ATCAGCGATCCAACAAAGAAAGAATTCTCTATCCGCAATGTCATCCCTCGACTAGTTGTG 1118 ||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||| Sbjct 1015 ATCAGCGATCCAACAAAAAAAGAGTTCTCTATCCGCAATGCCATCCCTCGACTAGTTGTG 1074 Query 1119 CGTTCCCTCTTCGTCGTGATGGCTACAATCGTTGCGGCAATGCTTCCATTTTTTGGAGAT 1178 |||||||||||||||||| |||||||||| | || |||||||||||||||||||||||| Sbjct 1075 CGTTCCCTCTTCGTCGTGGCGGCTACAATCATAGCAGCAATGCTTCCATTTTTTGGAGAT 1134 Query 1179 GTAAACTCCTTGTTAGGCGCTTTCGGTTTTATACCTCTAGACTTCGTTCTTCCTGTAGTT 1238 ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 1135 GTAAACTCCTTGTTAGGTGCTTTCGGTTTTATACCTCTAGACTTCGTTCTACCTGTAGTG 1194 Query 1239 TTCTTCAACTTTACTTTCAAGCCGTCTaaaaaaaGTTTCATTTTTTGGATCAACACTGTG 1298 |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1195 TTCTTCAATTTTACCTTCAAGCCATCTAAAAAAAGTTTCATTTTTTGGATCAACACTGTG 1254 Query 1299 ATCGCCGTGGTTTTTTCGTGTTTAGGGGTGATTGCTATGGTAGCGGCGGTTAGACAGATT 1358 ||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||| Sbjct 1255 ATCGCCGTGGTTTTTTCGTGTTTAGGGGTGAGTGCTATGGTAGCAGCAGTTAGACAGATT 1314 Query 1359 ATAATAGATGCCAATACGTATAAGTTGTTTGCGGATGTATAA 1400 ||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1315 ATAATCGATGCCAATACATATAAGTTGTTTGCGGATGTATAA 1356 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54659501575 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5