BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08250.1
Length=1445
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484876 jgi|Araly1|484876|fgenesh2_kg.5__868__AT3G44720.1 497 7e-140
Ahg941770 jgi|Araly1|941770|scaffold_602314.1 453 2e-126
Ahg919568 jgi|Araly1|919568|scaffold_100849.1 370 2e-101
Ahg919569 jgi|Araly1|919569|scaffold_100850.1 326 4e-88
> Ahg484876 jgi|Araly1|484876|fgenesh2_kg.5__868__AT3G44720.1
Length=1356
Score = 497 bits (269), Expect = 7e-140
Identities = 717/931 (77%), Gaps = 40/931 (4%)
Strand=Plus/Plus
Query 376 ACGGATCTCTCGCCGGCTCCGATGCACGGATCTAATCTACGCGTCGCTTATCAAGGTGTT 435
|||||||| || ||||| ||| |||| || |||| |||||| || |||||||||||||||
Sbjct 410 ACGGATCTATCTCCGGCACCGTTGCATGGTTCTAGTCTACGTGTAGCTTATCAAGGTGTT 469
Query 436 CCCGGTGCTTACTCTGAAGCAGCCGCTGGTAAAGCTTATCCTAATTGTCAA-GCTATACC 494
|||||||||||||| || |||||||| || ||||||||||| ||||| | | ||||| ||
Sbjct 470 CCCGGTGCTTACTCGGAGGCAGCCGCCGGAAAAGCTTATCCCAATTG-CGATGCTATTCC 528
Query 495 TTGCGATCAATTTGAGGTTGCGTTTCAAGCGGTGGAGCTTTGGATCGCAGATCGTGCTGT 554
||| || || || || ||||| ||||| |||||||||||||||||||| ||| | |||||
Sbjct 529 TTGTGACCAGTTCGACGTTGCTTTTCAGGCGGTGGAGCTTTGGATCGCTGATAGAGCTGT 588
Query 555 T-TTACCGGTGGAGAACTCTCTCGGCGGTTCTATCCACCGTAATTACGATCTCCTCCTCC 613
|| |||||||||||||| ||||| ||||| || || || || || |||||||||||||
Sbjct 589 GCTT-CCGGTGGAGAACTCACTCGGTGGTTCCATTCATCGGAACTATGATCTCCTCCTCC 647
Query 614 GTCACCGTCTTCATATAGTCGGCGAAGTTCA-ACTCCCTGTTCATCACTGTTTACTGGCT 672
|||||||||||||||| || || |||||||| | ||| ||||| || || | || ||
Sbjct 648 GTCACCGTCTTCATATTGTTGGAGAAGTTCAGATTCCG-GTTCACCATTGCCTCCTTGCA 706
Query 673 CTTCCCGGC-GTTCGTAAAG-AGTT-TCTCACACGTGTGATCTCACACCCTCAAG-GTCT 728
|| ||||| || || || | | || | | | || |||||||| ||||| |||| | ||
Sbjct 707 CT-CCCGGGAGTCCG-AACGGA-TTGTGTTTCGCGGGTGATCTCTCACCCGCAAGCG-CT 762
Query 729 CGCTCAGTGTGAGCACACGCTCACAAAGCTCGGACTT-A-ATGTCG-CACGTGAGGCAGT 785
|| || || ||| | ||| | | || ||| | ||| || | |||||||| |
Sbjct 763 AGCCCAAACAGAACACTCCCTCG-AT-GTTCTCACTCCACATG-CGGCGCGTGAGGCT-T 818
Query 786 TG-ATGACACCGCAGGA-GCCGCTGAGTTCATCGCCTCTAACAACCTCCGCGACACAGCC 843
| | ||||| || || || || || | |||||| ||||| |||| | ||||| ||
Sbjct 819 TCCACGACACAGC-GGCTGCTGCGGAATACATCGCAGCTAACGACCTACATGACACGGCG 877
Query 844 GCTATCGCGAGTGCACGCGCCGCCGAGATATACGGGTTGGAGATTTTGGAAGATGGGATT 903
||| | || || ||||||||||| ||| | ||| | |||| || | ||||| |||
Sbjct 878 GCTGTAGCCAGCGCACGCGCCGCTGAGCTCTACAACCTCCAGATATTAGCTGATGGAATT 937
Query 904 CAGGACGACGTGAGTAACGTGACGCGCTTCGTGATGCTGGCGCGTGAGCCAATCATACCT 963
|| |||||| | | ||||| ||||||||| | ||| | ||||||||||| || || ||
Sbjct 938 CAAGACGACCCGGGGAACGTCACGCGCTTCCTAATGTTAGCGCGTGAGCCGATAATCCC- 996
Query 964 A-GAACAGATAGACCGTTCAAGACTAGCATTGTCTTTGC-GCAC--GAG-A-AA-GGAAC 1016
| | || || | || |||||||||||||| |||||||| || | ||| | || |||||
Sbjct 997 ACGCACGGACCGGCCATTCAAGACTAGCATAGTCTTTGCTGCCCAAGAGCACAAAGGAAC 1056
Query 1017 CAGCGTGCTTTTCAAGGTGCTCTCTGCTTTCGCCTTCAGAGACATTAGCTTGACGAAGAT 1076
|| || || ||||| || ||||| || ||||| ||||||||||||||| |||| |||||
Sbjct 1057 TAGTGTTCTCTTCAAAGTCCTCTCGGCCTTCGCTTTCAGAGACATTAGCCTGACCAAGAT 1116
Query 1077 CGAATCGAGGCCGAATCACAACCGTCCGA-TCAGGGTCGT-GGATGATGCCAA-TGTCGG 1133
||| || |||| |||||||||| || | |||||||||| || ||| | | | ||||
Sbjct 1117 CGAGTCCCGGCCTCATCACAACCGCCC-ACTCAGGGTCGTTGG-TGACGGGAGCT-TCGG 1173
Query 1134 GACGGCGAAGCATTTTGAGTACATGTTTTATGTTGACTTCGAGGCCTCGATGGCGGAGGC 1193
||| ||||| | || |||||||||||||| || || || || || |||||||||||| |
Sbjct 1174 GACATCGAAGAACTTCGAGTACATGTTTTACGTGGATTTTGAAGCGTCGATGGCGGAGCC 1233
Query 1194 GCGTGCTCAGAACGCGCTTGCCGAGGTTCAGGAGTTTACATCGTTCTTGCGGGTGCTTGG 1253
|||||| |||||||||||||| |||||||| |||| || |||||| | ||||| ||||
Sbjct 1234 GCGTGCACAGAACGCGCTTGCGGAGGTTCAAGAGTACACGTCGTTCCTAAGGGTG-TTGG 1292
Query 1254 GA-GTTATCCCATGGATATGACTCCTTGGTC 1283
|| |||| |||||||||||||| || |||||
Sbjct 1293 GAAGTTACCCCATGGATATGACACCATGGTC 1323
> Ahg941770 jgi|Araly1|941770|scaffold_602314.1
Length=1347
Score = 453 bits (245), Expect = 2e-126
Identities = 714/935 (76%), Gaps = 54/935 (6%)
Strand=Plus/Plus
Query 379 GATCTCTCGCCGGCTCCGAT-GCACGGATCTAATCTACGCGTCGCTTATCAAGGTGTTCC 437
||||| || ||||| ||| | || ||||||| ||| || || || || ||||| |||||
Sbjct 391 GATCTATCTCCGGCGCCG-TCTCATGGATCTACTCTCCGTGTAGCGTACCAAGGAGTTCC 449
Query 438 CGGTGCTTACTCTGAAGCAGCCGCTGGTAAAGCTTATCCTAATTGTCAAGCTATACCTTG 497
||| ||||| || ||||||||||| || |||||||| || || | | ||||||| |||||
Sbjct 450 CGGCGCTTATTCCGAAGCAGCCGCCGGAAAAGCTTACCCGAACTCTGAAGCTATTCCTTG 509
Query 498 CGATCAATTTGAGGTTGCGTTTCAAGCGGTGGAGCTTTGGATCGCAGATCGTGCTGTTTT 557
||||| || || ||||||||||| |||||||||||||||||||| |||||||||||| |
Sbjct 510 TGATCAGTTCGACGTTGCGTTTCAGGCGGTGGAGCTTTGGATCGCCGATCGTGCTGTTCT 569
Query 558 ACCGGTGGAGAACTCTCTCGGCGGTTCTATCCACCGTAATTACGATCTCCTCCTCCGTCA 617
|| || |||||||||||||| ||||| || || | |||||||||||||||||||||||
Sbjct 570 CCCAGTTGAGAACTCTCTCGGTGGTTCGATTCATAGAAATTACGATCTCCTCCTCCGTCA 629
Query 618 CCGTCTTCATATAGTCGGCGAAGTTCA-ACTCCCTGTTCATCACTGTTTACTGGCTCTTC 676
|||||| || || ||||| |||||||| | |||| ||||| |||||| | || |||||||
Sbjct 630 CCGTCTCCACATCGTCGGAGAAGTTCAGA-TCCCGGTTCACCACTGTCTCCTTGCTCTTC 688
Query 677 CCGGCGTTCGTAAAGAGTTTC-TCACACGTGTGATCTCACACCCTCAAGGTCTCGCTCAG 735
|||| ||||||| || || | |||| || ||||| || || ||||||| ||| ||||||
Sbjct 689 CCGGAGTTCGTACGGA-TTGCATCACGCGAGTGATTTCGCATCCTCAAGCTCTGGCTCAG 747
Query 736 T-GTGA-GCACACGCTCA-CAAAGCTCGGACTT-AATGTCGCA-CG-T-GAGGCAGTTG- 787
| || | | |||||| |||| ||| ||| || ||| || | ||||| |||
Sbjct 748 ACG-GAAGGAT-CGCTCAACAAA-CTC--ACTCCAAAA--GCAGCGATTGAGGC-GTTTC 799
Query 788 ATGACACCGCAG-GAGCCGCTGAGTTCATCGCCTCTAACAACCTCCGCGACACAGCCGCT 846
| ||||| || | | || ||||| | |||||| | || ||||||| |||||| || ||
Sbjct 800 ACGACACAGCCGCG-GCGGCTGAATACATCGCGGCGAATAACCTCCACGACACGGCGGCG 858
Query 847 ATCGCGAGTGCACGCGCCGCCGAGATATACGGG-TTGGAGATTTTGGAAGATGGGATTCA 905
| ||||| ||| | || || ||| | ||||| || ||||| | | || ||||| ||
Sbjct 859 GTTGCGAGCGCAAGAGCAGCTGAGCTTTACGGACTTC-AGATTCTCGCCGACGGGATCCA 917
Query 906 GGACGACGTGAGTAA-CGTGACGCGCTTCGTGATGCTGGCGCGTGAGCCAATCATACCTA 964
||||||| || || ||| ||||||||| | ||||| |||||||| |||||||| ||
Sbjct 918 AGACGACGC-AGGAAACGTCACGCGCTTCCTTATGCTAGCGCGTGATCCAATCATCCCCC 976
Query 965 GAACAGATAGACCGTTCAAGACTAGCATTGTCTTT-GC-GCACGAGAA-A----GGAACC 1017
| || ||| | ||||| || || || || || ||| || || | |||| | |||||
Sbjct 977 GCACGGATCGTCCGTTTAAAACAAGTATCGT-TTTCGCCGCTCAAGAACATAAAGGAACT 1035
Query 1018 AGCGTGCTT-TTCAAGGTGCTCTCTGC-TTTCGCCTT-CAGAGACATTAGCTTGACGAAG 1074
||||| || ||||| ||||| || || ||| || || | || |||| |||||||||||
Sbjct 1036 AGCGTT-TTATTCAAAGTGCTTTCCGCGTTT-GCGTTTC-GAAACATCAGCTTGACGAAA 1092
Query 1075 ATCGAATCGAGGCCGAATCACAACCGTCC-GATCAGGGTCGT-GGATGATGCCAATGTCG 1132
||||||||| ||||| |||| || | || | | || ||||| || || | || || |
Sbjct 1093 ATCGAATCGCGGCCGCATCATAATTGCCCCGTT-AGAGTCGTCGGC-GACGAAAACGTAG 1150
Query 1133 GGACGGCGAAGCATTTTGAGTACATGTTTTATGTTGACTTCGAGGCCTCGATGGCGGAGG 1192
| || ||||||| |||||||||| || || || || ||||| || |||||||| ||||
Sbjct 1151 GAACATCGAAGCACTTTGAGTACACCTTCTACGTCGATTTCGAAGCGTCGATGGCAGAGG 1210
Query 1193 CGCGTGCTCAGAACGCGCTT-GCCGAGGTTCAGGAGTTTACATCGTTCTTGC-GGGTGCT 1250
||||||| || |||||| || || ||||| || |||| || || ||| | | |||||||
Sbjct 1211 CGCGTGCACAAAACGCG-TTAGCGGAGGTGCAAGAGTACACGTCATTCCT-CAGGGTGCT 1268
Query 1251 TGGGA-GTTATCCCA-TGGATATGACTCCTTGGTC 1283
|||| |||| |||| |||||||||| || |||||
Sbjct 1269 -GGGAAGTTA-CCCAATGGATATGACGCCATGGTC 1301
> Ahg919568 jgi|Araly1|919568|scaffold_100849.1
Length=475
Score = 370 bits (200), Expect = 2e-101
Identities = 280/316 (89%), Gaps = 16/316 (5%)
Strand=Plus/Plus
Query 981 CAAGACTAGCATTGTCTTTGCGCACGAGAAAGGAACCAGCGTGCTTTTCAAGGTGCTCTC 1040
||||||||| || | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 67 CAAGACTAGTATCGACTTTGCGCACGAGAAAGGAACCAGCGTGCTTTTCAAAGTGCTCTC 126
Query 1041 TGCTTTCGCCTTCAGAG----ACATTAGCTTGACGAAGATCGAATCGAGGCCGAATCACA 1096
|||||||||||| || | ||||||| ||||||||||||||||| |||||||||||||
Sbjct 127 TGCTTTCGCCTTTAGGGGGGGACATTAGTTTGACGAAGATCGAATCAAGGCCGAATCACA 186
Query 1097 ACCGTCCGATCAGGGTCGTGGATGATGCCAATGTCGGGACGGCGAAGCATTTTGAGT-AC 1155
|||||||||||||| | || |||||||| |||||||||| | | | |||||||| ||
Sbjct 187 ACCGTCCGATCAGGCTTGTCGATGATGCAAATGTCGGGA-G-C-A----TTTTGAGTTAC 239
Query 1156 ATGTTTTATGTTGACTTCGAGGCCTCGATGGCGGAGGCGCGTGCTCAGAACGCGCTTGCC 1215
| |||||| || ||||||||| ||||||||| |||||||||||||||||||||||| ||
Sbjct 240 AAGTTTTACGTCAACTTCGAGGTCTCGATGGCAGAGGCGCGTGCTCAGAACGCGCTTACC 299
Query 1216 GAGGTTCAGGAGTTTACATCGTTC-TT---GCGGGTGCTTGGGAGTTATCCCATGGATAT 1271
|||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct 300 GAGGTTCAGGAGTTTACATCGTTCGTTCTTGCGGGTGCTGGGGAGTTATCCCATGGATAT 359
Query 1272 GACTCCTTGGTCACCA 1287
||||||||||||||||
Sbjct 360 GACTCCTTGGTCACCA 375
> Ahg919569 jgi|Araly1|919569|scaffold_100850.1
Length=292
Score = 326 bits (176), Expect = 4e-88
Identities = 192/200 (96%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 443 CTTACTCTGAAGCAGCCGCTGGTAAAGCTTATCCTAATTGTCAAGCTATACCTTGCGATC 502
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 CTTACTCTGAAGCAGCCGCCGGTAAAGCTTATCCTAACTGTCAAGCTATACCTTGCGATC 120
Query 503 AATTTGAGGTTGCGTTTCAAGCGGTGGAGCTTTGGATCGCAGATCGTGCTGTTTTACCGG 562
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 AATTTGAGGTTGCGTTTCAAGCGGTGGAGCTTTGGATCTCAGATCGTGCTGTTTTACCGG 180
Query 563 TGGAGAACTCTCTCGGCGGTTCTATCCACCGTAATTACGATCTCCTCCTCCGTCACCGTC 622
||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||
Sbjct 181 TGGAGAACTCTCTCGGCGGTTCTATTCACCGGAATTACGATCTTCTCCTCCGTCATCGTC 240
Query 623 TTCATATAGTCGGCGAAGTT 642
|||| |||||||||||||||
Sbjct 241 TTCACATAGTCGGCGAAGTT 260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54050057655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5