BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08380.1
Length=703
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470899 jgi|Araly1|470899|fgenesh2_kg.1__853__AT1G08380.1 1014 0.0
> Ahg470899 jgi|Araly1|470899|fgenesh2_kg.1__853__AT1G08380.1
Length=685
Score = 1014 bits (549), Expect = 0.0
Identities = 649/695 (93%), Gaps = 16/695 (2%)
Strand=Plus/Plus
Query 4 AATAAAAATCTATTTCTTGTGTTTGTGTTGTATTTACTTaaaaaaaTAAAGGAGATCAGT 63
||||||||||||||||||| ||||||| | | | | || |||||||||||||||||||
Sbjct 1 AATAAAAATCTATTTCTTGCGTTTGTG-T-T-TGT-GTT--AAAAATAAAGGAGATCAGT 54
Query 64 TTGGGAGAAAGCAGCAAAG-A-AGAAAAATGGCAGCAACATTTGCAACACCATCGACGGT 121
||||||||||| ||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 55 TTGGGAGAAAGAAGCAAAGAACAAAAAAATGGCAGCAACATTTGCAACACCATCGACGGT 114
Query 122 GATAGGCCTCGGAGGATCATCCATCACCACCAAACCCTTCTCTTCATCCTTTTTAAAACC 181
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 115 GATAGGCCTCGGAGGATCATCCATCACCACCAAACCCTTCTCTTCATCCTTTCTAAAACC 174
Query 182 AACATTAAGCGCCAAGAACCCTTTGAGACTCGCCGGTGCATCGGGAGGAAGAGTCACTTG 241
|||||||||||||||||||||| | ||||||||||| |||||||| ||||||||||||||
Sbjct 175 AACATTAAGCGCCAAGAACCCTCTAAGACTCGCCGGGGCATCGGGTGGAAGAGTCACTTG 234
Query 242 CTTTGAGAGGAACTGGTTGAGGAGAGATTTGAACGTGGTAGGATTTGGGCTGATCGGATG 301
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 235 CTTTGAGAGGAACTGGTTGAGGAGAGATTTGAACGTGGTGGGATTTGGGCTGATCGGATG 294
Query 302 GCTAGCTCCGTCGAGCATTCCAGCGATAAATGGGAAGAGCCTGACGGGTCTCTTCTTCGA 361
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 295 GCTAGCTCCGTCGAGTATTCCAGCGATAAACGGGAAGAGCCTGACGGGTCTCTTCTTCGA 354
Query 362 TAGCATCGGAACTGAGCTCGCTCACTTCCCGACTCCTCCAGCTC-TCACTTCACAGTTCT 420
|||||| ||||||||||| ||||||||||| ||||||||||| | |||||||||||||||
Sbjct 355 TAGCATAGGAACTGAGCTGGCTCACTTCCCAACTCCTCCAGC-CGTCACTTCACAGTTCT 413
Query 421 GGTTGTGGTTGGTTACGTGGCACTTAGGCCTCTTCCTCTGCCTCACTTTCGGACAAATCG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GGTTGTGGTTGGTTACGTGGCACTTAGGCCTCTTCCTCTGCCTCACTTTCGGACAAATCG 473
Query 481 GATTCAAGGGCAGGACTGAAGATTACTTCTAAGGATAACTATTCTTGTTTTCGTTTGTAC 540
||||||||||||||||||| |||||||||||||||||||||||| | || | |||||||
Sbjct 474 GATTCAAGGGCAGGACTGAGGATTACTTCTAAGGATAACTATTCCTCTTC-CATTTGTAC 532
Query 541 TATATG--CTCTCTCTTGGTTATGTGTAATATTATCAA-TCAAAACAAAGCTTTCTTTGC 597
|||||| |||||||||||||||||||||| ||||||| ||||| |||||||||||||||
Sbjct 533 TATATGTTCTCTCTCTTGGTTATGTGTAATGTTATCAAATCAAACCAAAGCTTTCTTTGC 592
Query 598 TATTTGATGTTTCATTCTATATCTCGACAAGTCTTTCTTATATGATCTTGATTTTAAGAA 657
|||||||||||||||||||||| ||||| |||||||| || ||||||||| |||||| ||
Sbjct 593 TATTTGATGTTTCATTCTATATATCGACTAGTCTTTCGTA-ATGATCTTGCTTTTAAAAA 651
Query 658 TGTCTGTCAGTCTAACTAAAGTATTAAATGTTAAA 692
|||| ||||||||||||||||| | ||||||||||
Sbjct 652 TGTC-GTCAGTCTAACTAAAGTGTAAAATGTTAAA 685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25847337726
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5