BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G08520.1 Length=2549 Score E Sequences producing significant alignments: (Bits) Value Ahg311903 jgi|Araly1|311903|fgenesh1_pm.C_scaffold_1000683 2095 0.0 > Ahg311903 jgi|Araly1|311903|fgenesh1_pm.C_scaffold_1000683 Length=2319 Score = 2095 bits (1134), Expect = 0.0 Identities = 1255/1311 (96%), Gaps = 17/1311 (1%) Strand=Plus/Plus Query 127 ATGGCGATGACTCCGGTCGCGTCATCATCTCCAGTTTCAACCTGCAGACTCTTTCGCTGC 186 ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| Sbjct 1 ATGGCGATGACTCCGGTCGCGTCATCATCTCCAGTGTCAACGTGCAGGCTCTTTCGCTGC 60 Query 187 AATCTCCTC-CCTGATCTCTTACCTAAGCCTCTGTTTCTCTCCCTCCCCAAACGAAACAG 245 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AATCTCCTCTCC-GATCTCTTACCTAAGCCTCTGTTTCTCTCCCTCCCCAAACGAAACAG 119 Query 246 AATTGCCTCGTGCCGCTTCACTGTACGTGCCTCCGCGAATGCTACCGTCGAATCCCCTAA 305 || ||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 120 AAGTGCGTCGTGCCGCTTCACTGTACGTGCCTCCGCGAATGCTACCGTCGAATCCCCAAA 179 Query 306 CGGTGTCCCTGCCTCCACATCAGATACGGATACGGAGACGGATACCACCTCCTATGGCCG 365 ||||||||||||||| ||||||| | | || | || | ||||||||||||||||| Sbjct 180 CGGTGTCCCTGCCTCGACATCAG--A--G--AC-G-GA--G--ACCACCTCCTATGGCCG 227 Query 366 ACAGTTTTTCCCTTTGGCCGCAGTTGTTGGCCAGGAAGGCATAAAAACTGCTCTTTTACT 425 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 228 ACAGTTTTTCCCTTTGGCCGCAGTTGTTGGCCAGGAAGGCATCAAAACTGCTCTTTTACT 287 Query 426 TGGCGCGGTTGATCGTGAAATCGGAGGGATTGCCATTTCAGGTCGTAGAGGCACTGCAAA 485 ||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 288 TGGTGCTGTTGATCGTGAAATCGGAGGGATTGCTATTTCAGGTCGTAGAGGCACTGCAAA 347 Query 486 AACAGTCATGGCGCGAGGGCTTCATGAAATCCTCCCTCCTATTGAAGTTGTTGTAGGCTC 545 |||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 348 AACAGTCATGGCACGAGGGCTCCATGAAATCCTCCCTCCTATAGAAGTTGTTGTAGGCTC 407 Query 546 AATATCAAATGCTGACCCAGCTTGTCCAGATGAGTGGGAAGATGACTTAGATGAGCGCAT 605 |||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| || Sbjct 408 AATATCAAATGCTGACCCGGCTTGCCCAGATGAGTGGGAAGACGACTTAGATGAGCGAAT 467 Query 606 AGAGTACAATGCTGACAATACCATTAAGACTGAGATTGTCAAATCTCCTTTCATTCAGAT 665 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 468 AGAGTACAATGCTGATAATACCATTAAGACTGAGATTGTCAAATCTCCTTTCATTCAGAT 527 Query 666 TCCACTAGGAGTTACAGAAGACAGACTCATTGGGTCTGTTGATGTTGAGGAGTCTGTGAA 725 ||| || || || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 528 TCCTCTTGGTGTCACAGAAGACAGACTCATTGGGTCTGTTGATGTTGAGGAGTCTGTGAA 587 Query 726 AAGGGGGACAACTGTTTTCCAACCTGGTCTTTTGGCTGAAGCCCATAGAGGAGTGTTGTA 785 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 588 AAGGGGGACAACTGTTTTCCAACCTGGTCTTTTGGCTGAAGCCCATAGAGGAGTGTTGTA 647 Query 786 TGTTGATGAAATAAATCTCTTAGATGAGGGAATTAGTAATTTGCTTCTCAATGTATTGAC 845 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 648 TGTTGATGAGATAAATCTCTTAGATGAGGGAATTAGTAATTTGCTTCTCAATGTATTGAC 707 Query 846 GGATGGTGTTAATATAGTTGAAAGAGAAGGAATCAGCTTTAGGCACCCGTGCAAACCACT 905 ||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 708 GGACGGTGTTAATATAGTTGAAAGAGAAGGAATCAGTTTTAGGCACCCATGCAAACCACT 767 Query 906 TTTAATTGCAACCTATAACCCTGAAGAAGGTGCTGTTCGAGAGCACTTGCTAGACCGTGT 965 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 768 TTTAATTGCAACCTATAACCCTGAAGAAGGTGCTGTTCGAGAGCACTTGCTAGACCGTGT 827 Query 966 TGCCATTAATTTAAGTGCAGACCTACCTATGAGTTTTGAAGATCGTGTCGCAGCAGTTGG 1025 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 828 TGCCATTAATTTAAGTGCAGACCTTCCTATGAGTTTTGAAGATCGCGTCGCAGCAGTTGG 887 Query 1026 AATTGCCACACAGTTTCAGGAACGCTGTAATGAGGTTTTTAGAATGGTAAATGAAGAGAC 1085 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 888 AATTGCCACACAGTTTCAGGAACGCTGTAATGAGGTTTTTAAAATGGTAAATGAAGAGAC 947 Query 1086 AGAAACAGCAAAGACGCAGATTATATTGGCTAGAGAATATTTGAAAGATGTCAAGATAAG 1145 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 948 AGAGACAGCAAAGACGCAGATCATATTGGCTAGAGAATATTTGAAAGATGTCAAGATAAG 1007 Query 1146 TAGAGAGCAATTGAAGTATCTGGTTTTGGAAGCTGTCCGAGGTGGTGTCCAGGGACACCG 1205 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1008 TAGAGAGCAATTGAAGTATCTGGTTTTGGAAGCTGTCCGAGGTGGTGTTCAGGGACACCG 1067 Query 1206 CGCCGAATTGTATGCAGCTCGTGTGGCGAAGTGTTTAGCTGCAATTGAAGGACGAGAAAA 1265 ||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||| Sbjct 1068 CGCCGAATTGTATGCAGCTCGTGTGGCAAAGTGCTTAGCTGCAATTGAAGGAAGAGAAAA 1127 Query 1266 AGTCACAATCGATGACCTCAGAAAGGCCGTTGAGCTGGTCATTCTTCCTCGTTCATCACT 1325 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1128 AGTCACAATTGATGACCTCAGAAAGGCCGTTGAGCTGGTCATTCTTCCGCGTTCATCACT 1187 Query 1326 AGATGAGACTCC---ACCTGAACAACAAAACCAACCACCACCTCCTCCACCTCCTCCACA 1382 |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1188 AGATGAGACTCCTCCACCTGAACAACAAAACCAACCACCACCTCCACCACCTCCTCCACA 1247 Query 1383 AAATAGCGAATCTGGagaagaagaaaatgaagaagaacaagaagaagaaga 1433 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1248 AAATAGCGAATCTGGAGAAGAAGAAAATGAAGAAGAACAAGAAGAAGAAGA 1298 Score = 1683 bits (911), Expect = 0.0 Identities = 953/974 (98%), Gaps = 0/974 (0%) Strand=Plus/Plus Query 1436 aggatgaaagcaatgaagaaaatgaaaatgaGCAGCAACAGGACCAAATACCTGAAGAGT 1495 |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 1346 AGGATGAAAGCAATGAAGAAAATGAAAATGAGCAGCAACAAGACCAAATACCTGACGAGT 1405 Query 1496 TTATATTTGACGCTGAGGGCGGTCTGGTGGATGAGAAACTCCTCTTCTTTGCTCAACAAG 1555 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1406 TTATATTTGACGCTGAGGGTGGTCTGGTGGATGAGAAACTCCTCTTCTTTGCTCAACAAG 1465 Query 1556 CCCAGAAACGTCGGGGGAAAGCTGGCAGGGCGAAGAATGTCATATTCTCAGAAGATAGAG 1615 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1466 CCCAGAAACGTCGGGGGAAAGCTGGCAGAGCGAAGAATGTCATATTCTCAGAAGATAGAG 1525 Query 1616 GACGCTACATAAAGCCAATGCTTCCAAAGGGTCCAGTAAAAAGATTAGCTGTGGATGCAA 1675 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1526 GACGCTATATAAAGCCAATGCTTCCAAAGGGTCCAGTAAAAAGATTAGCTGTGGATGCAA 1585 Query 1676 CCCTTAGAGCAGCTGCACCATACCAGAAATTGCGCAGAGAGAAGGATATCTCAGGAACTA 1735 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1586 CCCTTAGAGCGGCTGCACCATACCAGAAATTGCGCAGAGAGAAGGATATTTCAGGAACTA 1645 Query 1736 GGAAAGTCTTTGTTGAGAAGACAGATATGAGGGCCAAAAGAATGGCAAGGAAAGCTGGAG 1795 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1646 GGAAAGTCTTTGTTGAGAAGACAGATATGAGGGCCAAAAGAATGGCAAGGAAAGCTGGAG 1705 Query 1796 CCCTGGTTATCTTTGTGGTTGATGCAAGTGGCAGTATGGCATTGAATCGTATGCAAAACG 1855 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1706 CCCTGGTTATCTTTGTGGTTGATGCAAGTGGCAGTATGGCATTGAATCGTATGCAAAACG 1765 Query 1856 CCAAAGGTGCTGCACTCAAACTACTGGCAGAGAGCTATACTAGCAGGGATCAGGTTTCGA 1915 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1766 CCAAAGGTGCTGCACTCAAACTACTGGCAGAGAGCTATACTAGCAGGGATCAGGTTTCGA 1825 Query 1916 TTATTCCTTTCCGAGGGGATGCTGCGGAAGTGCTCTTGCCCCCTTCTAGATCAATAGCAA 1975 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 1826 TTATTCCTTTCCGAGGAGATGCTGCGGAAGTGCTCTTGCCCCCTTCTAGATCAATTGCAA 1885 Query 1976 TGGCAAGGAATCGTCTTGAGAGACTTCCTTGTGGTGGTGGTTCTCCTCTTGCCCATGGTT 2035 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1886 TGGCAAGGAATCGTCTTGAGAGACTTCCTTGTGGTGGTGGTTCTCCTCTTGCCCATGGTT 1945 Query 2036 TAACAACGGCTGTAAGAGTAGGACTTAACGCAGAGAAGAGTGGTGATGTCGGGCGCATAA 2095 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 1946 TAACAACGGCTGTAAGAGTTGGACTTAACGCAGAGAAGAGTGGTGATGTCGGGCGCATTA 2005 Query 2096 TGATTGTTGCGATAACCGATGGTCGAGCCAACATTACACTGAAAAGATCAACTGATCCGG 2155 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2006 TGATTGTTGCAATAACCGATGGTCGAGCCAACATTACACTGAAAAGATCAACTGATCCGG 2065 Query 2156 AGTCTATTGCCCCAGATGCTCCTAGACCCACGTCCAAAGAATTGAAGGATGAGATTCTGG 2215 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2066 ACTCTATCGCCCCAGATGCTCCTAGACCCACGTCCAAAGAATTGAAGGATGAGATTCTGG 2125 Query 2216 AAGTTGCTGGGAAGATATACAAGGCAGGGATGTCTCTTCTAGTGATTGATACCGAGAACA 2275 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2126 AAGTTGCTGGGAAGATATACAAGGCAGGGATGTCTCTTCTAGTGATTGATACTGAGAACA 2185 Query 2276 AGTTTGTTTCAACTGGTTTTGCAAAGGAGATCGCAAGAGTTGCTCAAGGAAAATATTATT 2335 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 2186 AGTTTGTTTCAACTGGTTTTGCAAAGGAGATCGCTAGAGTTGCTCAAGGAAAATACTATT 2245 Query 2336 ACTTGCCAAATGCTTCGGATGCTGTAATCTCGGCCACCACTAGGGATGCACTATCTGATC 2395 ||||||||||||||||||| || || |||||||||||||| ||||||||||||||||||| Sbjct 2246 ACTTGCCAAATGCTTCGGACGCGGTCATCTCGGCCACCACGAGGGATGCACTATCTGATC 2305 Query 2396 TGAAGAATTCTTGA 2409 |||||||||||||| Sbjct 2306 TGAAGAATTCTTGA 2319 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96101688135 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5