BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G08570.1 Length=1417 Score E Sequences producing significant alignments: (Bits) Value Ahg470920 jgi|Araly1|470920|fgenesh2_kg.1__874__AT1G08570.1 2017 0.0 Ahg905234 jgi|Araly1|905234|Al_scaffold_0003_2362 363 3e-99 Ahg345747 jgi|Araly1|345747|fgenesh1_pg.C_scaffold_4002089 346 3e-94 > Ahg470920 jgi|Araly1|470920|fgenesh2_kg.1__874__AT1G08570.1 Length=1372 Score = 2017 bits (1092), Expect = 0.0 Identities = 1265/1345 (94%), Gaps = 25/1345 (2%) Strand=Plus/Plus Query 42 GAAAGCGAAACTTCGCTGGCGACTAAAGATTGCTGAGAAGACACGTCGTCTCTGTGAGAA 101 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17 GAAAACGAAACTTCGCTGGCGACTAAAGATTGCTGAGAAGACACGTCGTCTCTGTGAGAA 76 Query 102 CTTTTTCTTTTTCTTCTGGTATATTCT-G-GAGACAGATATTGT-TTTTTCTTCTGATT- 157 | ||||||||||||||||||| ||||| | |||| ||||||||| ||||||||| | || Sbjct 77 C-TTTTCTTTTTCTTCTGGTAAATTCTGGAGAGAGAGATATTGTATTTTTCTTC-G-TTC 133 Query 158 AGAGAATAATATGACGGAAGTGATTAGCAAAACGAGTTTGTTCTTAGGAGCTTGT-GG-- 214 |||||| |||| ||||||||||||||||||||||||||||| ||||||||| || Sbjct 134 GGAGAAT--TATGGCGGAAGTGATTAGCAAAACGAGTTTGTTCACCGGAGCTTGTGGGAA 191 Query 215 TAATCATCACCGTGTTGATGATTTCTCTTTCTCTCCGGTGAGTTTTGGTGGGTTTGGTTT 274 | |||||||||||||||||||||||||||| || |||||||||||||||||||||||| | Sbjct 192 TCATCATCACCGTGTTGATGATTTCTCTTTGTCCCCGGTGAGTTTTGGTGGGTTTGGTCT 251 Query 275 GAAAAAGAGTTTCTCTTGTCTGAAGCTTAAGAGTCAGAAGCCTCTTAGAAGTGTATTTTA 334 |||||||||||||||||||| |||||| |||| ||| |||||||||| ||||| ||| | Sbjct 252 GAAAAAGAGTTTCTCTTGTCAGAAGCTGAAGAATCAAAAGCCTCTTACAAGTGAATTCCA 311 Query 335 CGGAAAACAGATCGTTTTCGGAGATTCTCAAGACGAGAGCTTCAGAA-GATCATCA-GCT 392 |||||||||||||||||||| ||| ||||||||||||||||||||| || | | | | | Sbjct 312 TGGAAAACAGATCGTTTTCGGTGATGCTCAAGACGAGAGCTTCAGAAGGAGC-TTATG-T 369 Query 393 ATCACAGCT-CAGACAACTTTGAGGATTGGGACAGCTCAGAAGTGGTGGGAGAAAGGTCT 451 | | | | |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 370 GT-AAATTTGCAGACAACTTTGAGGATTGGAACAGCTCAGAAGTGGTGGGAGAAAGGTCT 428 Query 452 GAAAGATAACATGAGAGAGATCTCTTCAGCTCAAGAGCTCGTTGATTCTCTTACTAACGC 511 |||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||||| Sbjct 429 GAAAGAAAACATGAGAGAGATCTCTTCAGCTCAAGAACTCGTTGACTCTCTCACTAACGC 488 Query 512 TGGTGATAAGCTTGTTGTTGTTGATTTCTTCTCACCTGGCTGTGGTGGCTGCAAGGCTCT 571 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 489 TGGTGATAAGCTTGTTGTTGTTGATTTCTTCTCACCTGGCTGTGGCGGCTGCAAGGCTCT 548 Query 572 CCATCCTAAGATATGTCAGTTTGCAGAGATGAACCCGGATGTGCAGTTTCTTCAGGTGAA 631 |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 549 TCATCCTAAGATATGTCAGTTGGCAGAGATGAACCCTGATGTGCAGTTTCTTCAGGTGAA 608 Query 632 TTACGAGGAGCATAAGTCCATGTGTTATAGTCTTGGTGTCCATGTTCTCCCTTTTTTCCG 691 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 609 TTACGAGGAGCATAAGTCCATGTGTTATAGCCTCGGTGTCCATGTTCTCCCTTTTTTCCG 668 Query 692 ATTCTACCGTGGCTCTCAGGGTCGTGTTTGCAGCTTTAGCTGTACCAATGCCACGATCAA 751 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 669 ATTCTACCGAGGCTCTCAGGGTCGTGTTTGCAGCTTTAGCTGTACCAATGCCACGATCAA 728 Query 752 GAAATTCAGAGATGCCTTGGCAAAGCATGGTCCAGATAGGTGCAGCCTCGGACCGACCAA 811 ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || Sbjct 729 GAAATTCAGAGATGCATTGGCAAAGCATGGTCCAGATAGGTGCAGCCTTGGACCGACTAA 788 Query 812 AGGCCTTGAAGAGAAAGAGCTTGTGGCACTTGCAGCCAACAAAGAACTCAACTTTACTTA 871 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 789 AGGCCTTGAAGAGAAAGAGCTTGTGGCACTTGCAGCCAACAAAGAACTCAACTTTACTTA 848 Query 872 CACACCAAAGCCTGTACCAGTTGAGAAAGAAGCAGCCACTCCTGATTCAAACCCAAGTCT 931 |||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| Sbjct 849 CACACCAAAGCCTGTACCGGTTGAGAAAGAAGCAGCCACTCCTAAATCAAACCCAAGTCT 908 Query 932 CCCTGTTCCTCTTCCTTCGATGAGCTCCAATGACGAAAAAACATTGGTCTCCGCAGGGAG 991 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 909 CCCTGTTCCTCTTCCTTCGATGAGCGCCAATGACGAAAAAACATTGGTCTCCGCAGGGAG 968 Query 992 ATGAGA-CTGAATAAACATTTCCCTGTATAGTTTGCGTGATAGTAGTAGTAG---CAGCA 1047 |||||| | ||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 969 ATGAGATC-GAATAAACATTTCCCTGTACAGTTTGCGTGATAGTAGTAGTAGTAGCAGCA 1027 Query 1048 GCTGGATATATTGCAGTACCTAAAGATGTCAGTTCTCGGAGCAGCCAGCCGGTTTAGTGG 1107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1028 GCTGGATATATTGCAGTACCTAAAGATGTCAGTTCTCGGAGCAGCCAGCCGGTTTAGTGG 1087 Query 1108 GGTTTAGttttttttCGGGTCCCCTGAGCAAAATCGGTTCTTGGCCTCTGGGTTTACCTA 1167 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1088 GGTTTAGTTTTTTTTTGGGTCCCCTGAGCAAAATCGGTTCTTGGCATCTGGGTTTACCTA 1147 Query 1168 GAGCAAAACCAGTTCCGATGGTTACTTGAGTTTTGCTCAGTTCTTATGGGATTG-GAGTG 1226 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1148 GAGCAAAACCAGTTCCGATGGTTACTTGAGTTTTGCTCAGTTCTTATGGGATTGAGAGTG 1207 Query 1227 GAAGGTCGTGCGCTCGGCAGCATGGAAGCTTTCTCCTTTCAATCAGCTTCAGTAGAgttt 1286 |||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||| Sbjct 1208 GAAGGTCGTGCGCTCGGCGGCATGGAAGCTTTCTCCTCTCAATCAGCTTCGGTAGAGTTT 1267 Query 1287 tggtttctttgtttgttttttatttgctttAAGAATTTAATGTAAATAAAAATCCAATGA 1346 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 1268 TGGTTTCTTTGTTTGTTTTT-ATTTGCTTTAAGATTTTAATGTAAATAAAAATCCAATGA 1326 Query 1347 GGATTATCATACAATGTCATGAAGG 1371 ||||||||||||||||||||||||| Sbjct 1327 GGATTATCATACAATGTCATGAAGG 1351 > Ahg905234 jgi|Araly1|905234|Al_scaffold_0003_2362 Length=369 Score = 363 bits (196), Expect = 3e-99 Identities = 210/217 (97%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 719 TTGCAGCTTTAGCTGTACCAATGCCACGATCAAGAAATTCAGAGATGCCTTGGCAAAGCA 778 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 102 TTGCAGCTTTAGCTGTACCAATGCCACGATCAAGAAATTCAGAGATGCATTGGCAAAGCA 161 Query 779 TGGTCCAGATAGGTGCAGCCTCGGACCGACCAAAGGCCTTGAAGAGAAAGAGCTTGTGGC 838 ||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| Sbjct 162 TGGTCCAGATAGGTGCAGCCTTGGACGGACTAAAGGCCTTGAAGAGAAAGAGCTTGTGGC 221 Query 839 ACTTGCAGCCAACAAAGAACTCAACTTTACTTACACACCAAAGCCTGTACCAGTTGAGAA 898 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 222 ACTTGCAGCCAACAAAGATCTCAACTTTACTTACACACCAAAGCCTGTACCAGTTGAGAA 281 Query 899 AGAAGCAGCCACTCCTGATTCAAACCCAAGTCTCCCT 935 |||||||||||||||| ||| |||||||||||||||| Sbjct 282 AGAAGCAGCCACTCCTAATTTAAACCCAAGTCTCCCT 318 > Ahg345747 jgi|Araly1|345747|fgenesh1_pg.C_scaffold_4002089 Length=369 Score = 346 bits (187), Expect = 3e-94 Identities = 207/217 (95%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 719 TTGCAGCTTTAGCTGTACCAATGCCACGATCAAGAAATTCAGAGATGCCTTGGCAAAGCA 778 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 102 TTGCAGCTTTAGCTGTACCAATGCCACGATCAAGAAATTCAGAGATGCATTGGCAAAGCA 161 Query 779 TGGTCCAGATAGGTGCAGCCTCGGACCGACCAAAGGCCTTGAAGAGAAAGAGCTTGTGGC 838 ||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| Sbjct 162 TGGTCCAGATAGGTGCAGCCTTGGACGGACTAAAGGCCTTGAAGAGAAAGAGCTTGTGGC 221 Query 839 ACTTGCAGCCAACAAAGAACTCAACTTTACTTACACACCAAAGCCTGTACCAGTTGAGAA 898 |||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||| Sbjct 222 ACTTGCAGCCAACAAAGATCTCAACTTTACTTACAGACCAAAGCATGTACCAGTTGAGAA 281 Query 899 AGAAGCAGCCACTCCTGATTCAAACCCAAGTCTCCCT 935 |||||||||||||||| ||| ||||||||| |||||| Sbjct 282 AGAAGCAGCCACTCCTAATTTAAACCCAAGCCTCCCT 318 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52983530795 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5