BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08630.1
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470930 jgi|Araly1|470930|fgenesh2_kg.1__884__AT1G08630.2 2143 0.0
> Ahg470930 jgi|Araly1|470930|fgenesh2_kg.1__884__AT1G08630.2
Length=1364
Score = 2143 bits (1160), Expect = 0.0
Identities = 1250/1294 (97%), Gaps = 3/1294 (0%)
Strand=Plus/Plus
Query 218 ACAAGCTTATTTCATAAGAAACTTCAAATTAGAATCAGAAACAAGAGCATCCTTCTTCAT 277
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 ACAAGCTTATTTAATAAGAAACTTCAAATTAGAATCAGAAACAAGAGCATCCTTCTTCAT 132
Query 278 TTACACAGGTAAATTAGGTGTAAAAATGGTGATGAGAAGTGTGGATCTACGATCAGATAC 337
||||| ||||||||| |||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 133 TTACAGAGGTAAATTTGGTGTAAAAATGGTGATGAGAAGTGTGGATTTACGATCTGATAC 192
Query 338 CGTTACTAGACCGACAGATGCGATGCGAGAAGCAATGTGTAACGCAGAGGTGGATGATGA 397
|||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 193 CGTTACTAAACCGACTGATGCGATGCGAGAAGCAATGTGTAGCGCAGAGGTGGATGATGA 252
Query 398 CGTCCTCGGATATGACCCAACGGCTAGACGTCTTGAAGAGGAGATGGCTAAGATGATGGG 457
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 253 CGTCCTCGGATACGACCCAACAGCTAGACGTCTTGAAGAGGAGATGGCTAAGATGATGGG 312
Query 458 GAAAGAGGCTGCTCTGTTCGTGCCATCCGGGACAATGGGGAATCTGATCAGCGTGATGGT 517
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 313 GAAAGAGGCTGCTCTGTTCGTGCCATCCGGGACAATGGGGAATCTCATCAGCGTGATGGT 372
Query 518 TCACTGCGACGTGAGAGGCAGCGAGGTGATTCTTGGCGACAATTGTCACATCCATGTTTA 577
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 373 TCACTGCGACGTGAGAGGCAGCGAGGTGATTCTTGGCGATAATTGCCACATCCATGTTTA 432
Query 578 CGAGAATGGAGGGATATCGACTATCGGGGGAGTGCATCCTAAGACAG-TCAAGAATGAAG 636
||||||||||||||||||||| ||||| ||||||||||| ||||| | ||||||||||||
Sbjct 433 CGAGAATGGAGGGATATCGACAATCGGAGGAGTGCATCCCAAGAC-GATCAAGAATGAAG 491
Query 637 AAGACGGGACCATGGACTTGGAGGCCATTGAAGCAGCTATTAGAGATCCTAAAGGAAGCA 696
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 492 AAGACGGGACCATGGACTTGGAGGCCATTGAAGCAGCCATTAGAGATCCTAAAGGAAGCA 551
Query 697 CGTTTTATCCATCAACAAGGTTGATTTGCTTGGAGAACACACATGCCAACTCTGGTGGGA 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 CGTTTTATCCATCAACAAGGTTGATTTGCTTGGAGAACACACATGCCAACTCTGGTGGGA 611
Query 757 GATGTTTGAGCGTGGAATACACTGAGAAAGTTGGAGAGATTGCGAAGAGACATGGCGTGA 816
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 612 GATGTTTGAGCGTGGAATACACTGAGAAAGTTGGAGAGATAGCCAAGAGACATGGCGTAA 671
Query 817 AGCTCCATATCGACGGAGCCCGTCTTTTCAATGCTTCCATTGCACTTGGAGTTCCAGTCC 876
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 672 AGCTCCATATCGACGGAGCCCGTCTTTTCAATGCTTCAATTGCACTTGGAGTTCCAGTCC 731
Query 877 ATAAGCTTGTTAAGGCTGCGGACTCCGTTCAGGTGTGTCTCTCTAAAGGTCTTGGAGCTC 936
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 732 ATAAGCTTGTTAAGGCTGCTGACTCCGTTCAGGTGTGTCTCTCTAAAGGTCTTGGAGCTC 791
Query 937 CGGTAGGATCTGTAATCGTTGGTTCGCAAAGCTTCATAGAGAAGGCGAAAACGGTTAGGA 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 CGGTAGGATCTGTAATCGTTGGTTCGCAAAGCTTCATAGAGAAGGCGAAAACGGTTAGGA 851
Query 997 AAACATTAGGTGGAGGAATGAGACAAATAGGTGTTCTGTGCGCAGCCGCTTTGGTCGCAC 1056
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 852 AAACATTAGGTGGAGGAATGAGACAAATAGGTGTACTGTGCGCAGCCGCTTTGGTCGCAC 911
Query 1057 TCCAAGAAAACCTCCCAAAGCTACAACATGACCACAAGAAGGCTAAGTTGTTAGCTGAAG 1116
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 912 TCCAAGAAAACCTCCCAAAGCTACAACATGACCACAGGAAGGCTAAGTTGTTAGCTGAAG 971
Query 1117 GGTTGAATCAAATGAAAGGGATTAGAGTAAATGTTGCAGCCGTGGAGACCAACATGATTT 1176
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 972 GGTTGAATCAAATGAAAGGGATTAGAGTAAATGTTGCAGCCGTGGAGACCAACATGATAT 1031
Query 1177 TCATGGATATGGAGGATGGTTCAAGACTTACGGCTGAGAAACTGCGGAAGAATCTAGAGG 1236
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1032 TCATGGATATGGAGGATGGTTCAAGACTTACGGCTGAGAAACTGCGGAAGAGTTTAGAGG 1091
Query 1237 AGAATGGCATTCTCCTTATCCGGGGAAACTCATCCCGGATCAGAATAGTTATACACCACC 1296
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1092 AGAATGGCATTCTCCTCATCCGGGGAAACTCATCCCGGATCAGAATGGTTATACACCACC 1151
Query 1297 AGATAACAACAAGTGATGTGCATTACACATTGTCTTGCTTTCAGCAAGCAATGCTAACGA 1356
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1152 AGATAACAACAAGTGATGTGCATTACACACTGTCTTGCTTTCAGCAAGCAATGCAAACGA 1211
Query 1357 TGCAGGAACCAAGCCGAACCTAATTTGGCGAAACCGAAATGCTTCTTCTTTTCTTTTCAA 1416
| |||||||||||||||| ||||| ||||||||| |||| ||||||||||||||||| ||
Sbjct 1212 TACAGGAACCAAGCCGAATCTAATATGGCGAAACGGAAAGGCTTCTTCTTTTCTTTTGAA 1271
Query 1417 CTTATTAAATATTGTTGTCTAAAGTACATTTTAATTAAAACTATAAGCATTTCAATGAAA 1476
|||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1272 CTTACTAAATATTGTTGTCTAA-GTACATTTTAATTAAAACTATAAGCATCTCAATGAAA 1330
Query 1477 TTGTCACCCTCATTCCTGGATGTTTGAGTTTTTA 1510
|||||||||||||||||| || ||||||||||||
Sbjct 1331 TTGTCACCCTCATTCCTGAATCTTTGAGTTTTTA 1364
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58658977300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5