BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08890.1
Length=1675
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470961 jgi|Araly1|470961|fgenesh2_kg.1__915__AT1G08890.1 2292 0.0
Ahg470964 jgi|Araly1|470964|fgenesh2_kg.1__918__AT1G08900.2 1511 0.0
> Ahg470961 jgi|Araly1|470961|fgenesh2_kg.1__915__AT1G08890.1
Length=1529
Score = 2292 bits (1241), Expect = 0.0
Identities = 1372/1436 (96%), Gaps = 6/1436 (0%)
Strand=Plus/Plus
Query 25 AGATGGAATCTGGAAGTATGAAAACACCTCTGGTGAAT-A--ATCAAGAAGAAGCAAGAA 81
||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||
Sbjct 1 AGATGGAATCTGGAAGTATCAAAACACCTCTGGTGAATAATGATCAAGAAGAAGCAAGAA 60
Query 82 GCTCTTCTTCCATCACTTGTGGTCTTCTTCTTAGTACCTCCGTCGCTGTCACTGGCTCTT 141
||||||||||||||||| |||||||||||| ||||||||||||||| ||||||| || |
Sbjct 61 CCTCTTCTTCCATCACTTCTGGTCTTCTTCTCAGTACCTCCGTCGCTATCACTGGATCCT 120
Query 142 TCGTTTATGGCTGCGCTATGTCATATTCATCGCCTGCTCAGTCCAAAATCATGGAAGAAC 201
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 121 TCGTTTATGGCTGCGCTATGTCATATTCGTCGCCTGCTCAATCCAAAATCATGGAAGAAC 180
Query 202 TGGGACTTTCCGTTGCAGATTATTCGTTTTTCACATCGGTAATGACATTGGGAGGAATGA 261
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 181 TGGGACTTTCCGTGGCAGATTATTCGTTTTTCACATCGGTCATGACATTAGGAGGAATGA 240
Query 262 TTACGGCCGCGTTTAGTGGAAAAATTGCTGCAGTTATTGGTCGTCGACAGACAATGTGGA 321
| || |||||| ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 241 TAACAGCCGCGCTTAGTGGAAAAATCGCTGCAATTATTGGTCGTCGACAGACAATGTGGA 300
Query 322 TCGCGGATGTTTTCTGCATCTTTGGTTGGCTCGCTGTAGCCTTTGCACATGATAAAATGC 381
|| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 301 TCTCGGATGTTTTCTGCATCTTCGGTTGGCTTGCTGTAGCCTTTGCACATGATAAAATGC 360
Query 382 TGTTAAATATTGGTCGAGGCTTCTTGGGGTTTGGGGTTGGTCTCATTAGTTATGTGGTTC 441
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 TGCTAAATATTGGACGAGGCTTCTTGGGGTTTGGGGTTGGTCTCATTAGTTATGTGGTAC 420
Query 442 CTGTATATATAGCAGAAATTACGCCCAAAGCATTTCGTGGAGGATTCTCTTTTTCCAATC 501
|||| ||||||||||||||||| || |||||||||||||||||||| |||||||||||||
Sbjct 421 CTGTGTATATAGCAGAAATTACACCTAAAGCATTTCGTGGAGGATTTTCTTTTTCCAATC 480
Query 502 AACTTCTACAAAGTTTTGGGATATCGCTCATGTTCTTCACCGGAAACTTTTTTCATTGGA 561
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 481 AACTTCTACAAAGTTTTGGAATTTCGCTCATGTTCTTCACCGGAAACTTTTTTCATTGGA 540
Query 562 GAACATTAGCTCTTTTAAGTGCAATCCCATGTGGTATCCAAATGATATGTTTATTTTTTA 621
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 GAACATTAGCTCTTTTAAGTGCAATCCCATGTGGTGTCCAAATGATATGTTTATTTTTTA 600
Query 622 TTCCTGAATCACCTAGATGGCTGGCTATGTATGGTAGAGAACGAGAGCTTGAGGTTACTT 681
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 601 TTCCTGAATCACCTAGATGGCTGGCTATGTATGGTAGAGAACGAGAACTTGAAATTACTT 660
Query 682 TGAAGAGGCTAAGAGGAGAAAATGGTGATATTCTCGAAGAAGCAGCTGAAATCAGAGAAA 741
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGAAGAGACTAAGAGGAGAAAATGGTGATATTCTCGAAGAAGCAGCTGAAATCAGAGAAA 720
Query 742 CAGTGGAAACCTCTAGAAGAGAATCTCGAAGTGGACTAAAAGATTTGTTCAATATGAAAA 801
| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 721 CGGTGGAAACCTCCAGAAGAGAATCTCGAAGTGGACTAAGAGATTTGTTCAATATGAAAA 780
Query 802 ACGCACATCCGTTAATCATTGGATTGGGCCTAATGCTCTTGCAACAATTTTGTGGGAGTT 861
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ACGCACATCCGTTGATCATTGGATTGGGCCTAATGCTCTTGCAACAATTTTGTGGGAGTT 840
Query 862 CGGCGATAAGTGCTTATGCTGCTCGTATTTTCGACACAGCCGGTTTTCCAAGCGACATAG 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CGGCGATAAGTGCTTATGCTGCTCGTATTTTCGACACAGCCGGTTTTCCAAGCGACATAG 900
Query 922 GAACATCCATCCTTGCAGTTATTTTGGTACCGCAATCTATTATTGTCATGTTTGCCGTCG 981
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 901 GAACATCCATCCTTGCAGTTATTTTGGTACCGCAATCTATAATTGTCATGTTCGCCGTCG 960
Query 982 ACCGATGTGGACGCCGACCACTTTTGATGAGCTCTTCTATCGGTCTGTGCATATGTTCAT 1041
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 961 ACCGATGTGGACGCCGACCACTTCTGATGAGCTCTTCTATCGGTCTGTGCATATGTTCAT 1020
Query 1042 TTTTAATTGGCCTCTCTTACTATCTTCAGA---ACCATGGTGATTTTCAAGAGTTTTGTT 1098
|||| |||||||| || |||||||||||| |||||||||||||||| ||||||||||
Sbjct 1021 TTTTTATTGGCCTTTCATACTATCTTCAGGTTTACCATGGTGATTTTCAGGAGTTTTGTT 1080
Query 1099 CCCCTATCTTAATCGTCGGTTTAGTGGGTTATGTCTTATCCTTTGGCATTGGTCTAGGTG 1158
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1081 CCCCTATGTTAATCGTCGGTTTAGTGGGTTATGTCTTATCCTTTGGCATTGGTTTAGGTG 1140
Query 1159 GACTACCATGGGTTATTATGTCTGAGGTGTTTCCGGTGAATGTGAAAATTACCGCCGGTA 1218
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1141 GACTACCATGGGTTATAATGTCTGAGGTGTTTCCGATGAATGTGAAAATTACCGCTGGTA 1200
Query 1219 GTCTTGTAACAGTGTCAAACTGGTTTTTCAGTTGGATTATCATTTTCAGTTTTAATTTCA 1278
| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GCCTTGTAACAGTATCTAACTGGTTTTTCAGTTGGATTATCATTTTCAGTTTTAATTTCA 1260
Query 1279 TGATGCAATGGAGTGCTTTCGGAACATATTTCATATTTGCTGGAGTTTCTCTGATGTCAT 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TGATGCAATGGAGTGCTTTCGGAACATATTTCATATTTGCTGGAGTTTCTCTGATGTCAT 1320
Query 1339 TCGTATTTGTATGGACTTTGGTGCCTGAGACGAAAGGCCGAACACTTGAAGATATTCAAC 1398
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TCGTATTTGTATGGACATTGGTGCCTGAGACGAAAGGCCGAACACTTGAAGATATTCAAC 1380
Query 1399 AATCACTAGGCCAACTTTCATAAATCCAAAGTTGATTCTTTACTCCACAATGCCAG 1454
|||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||
Sbjct 1381 AATCACTAGGCCAACTTTCATAAATCTAAAGTTGATTGTTTACGCCACAATGCCAG 1436
> Ahg470964 jgi|Araly1|470964|fgenesh2_kg.1__918__AT1G08900.2
Length=1377
Score = 1511 bits (818), Expect = 0.0
Identities = 1191/1368 (87%), Gaps = 38/1368 (3%)
Strand=Plus/Plus
Query 69 GAAGAAGCAAGAAG-CTCTTCTTCCATCACTTGTGGTCTTCTTCTTAGTACCTCCGTCGC 127
||| |||||||||| |||||||| |||||| ||||||| |||| || || |||||||
Sbjct 33 GAATAAGCAAGAAGAAGCTTCTTCCTTCACTTCTGGTCTTATTCTCAGCACATCCGTCGT 92
Query 128 TGTCACTGGCTCTTTCGT-TTATGGCTGCGCTATGTCATATTCATCGCCTGCTCAGTCCA 186
|||| |||| || ||| | |||||||||||| ||||||||||| ||||||||||| || |
Sbjct 93 TGTCGCTGGATCATTC-TCTTATGGCTGCGCCATGTCATATTCGTCGCCTGCTCAATCAA 151
Query 187 AAATCATGGAAGAACTGGGACTTTCCGTTGCAGATTATTCGTTTTTCACATCGGTAATGA 246
|||| ||||||||||||||||||| | | || |||||||||||| ||||||||||
Sbjct 152 AAATTATGGAAGAACTGGGACTTT-C--T-----TT-TTCGTTTTTCACTTCGGTAATGA 202
Query 247 CATTGGGAGGAATGATTACGGCCGCGTTTAGTGGAAAAAT-TGCTGC-AGTTATTGGTCG 304
|||| |||||||||||||||||||||||||| || ||||| | |||| | | |||||||
Sbjct 203 CATTAGGAGGAATGATTACGGCCGCGTTTAGCGGGAAAATAT-CTGCTA-TCGTTGGTCG 260
Query 305 TCGACAGACAATGTGGATCGCGGATGTTTTCTGCATCTTTGGTTGGCTCGCTGTAGCCTT 364
||||||||||||||||||| | ||||||| |||||| |||||||||||||||||||| |
Sbjct 261 TCGACAGACAATGTGGATCTCAGATGTTTGCTGCATTTTTGGTTGGCTCGCTGTAGCATA 320
Query 365 TGCACATGATAAAATGCTG-TTAAATATTGGTCGAGGCTTCTTGGGGTTTGGGGTTGGTC 423
||||||||||| | ||| || |||||||| ||| |||||||||||| ||||| ||||
Sbjct 321 TGCACATGATATTCTACTGCTT-AATATTGGACGACTCTTCTTGGGGTTCGGGGTCGGTC 379
Query 424 TCATTAGTTATGTGGTTCCTGTATATATAGCAGAAATTACGCCCAAAGCATTTCGTGGAG 483
|||||||||||||||||||||| ||||||||||||||||| |||||| ||||||| ||||
Sbjct 380 TCATTAGTTATGTGGTTCCTGTGTATATAGCAGAAATTACACCCAAAACATTTCGCGGAG 439
Query 484 GATTCTCTTTTTCCAATCAACTTCTACAAAGTTTTGGGATATCGCTCATGTTCTTCACCG 543
|||| |||| ||||||||| ||||||||| || ||||||| || |||||||| |||| |
Sbjct 440 GATTTTCTTATTCCAATCAGCTTCTACAATGTCTTGGGATTTCACTCATGTTTTTCATTG 499
Query 544 GAAACTTTTTT-CATTGGAGAACATTAGCTCTTTTAAGTGCAATCCCATGTGGTAT-CCA 601
| || |||||| |||||| ||||||||||||||||||||||||||||| ||| | | |||
Sbjct 500 G-AATTTTTTTCCATTGGCGAACATTAGCTCTTTTAAGTGCAATCCCAAGTGCT-TCCCA 557
Query 602 AATGATATGTTTATTTTTTATTCCTGAATCACCTAGATGGCTGGCTATGTATGGTAGAGA 661
| |||||||||||||||||||||||||||| ||||||||| |||| ||||||||| ||||
Sbjct 558 AGTGATATGTTTATTTTTTATTCCTGAATCTCCTAGATGGTTGGCGATGTATGGTCGAGA 617
Query 662 ACGAGAGCTTGAGGTTACTTTGAAGAGGCTAAGAGGAGAAAATGGTGATATTCTCGAAGA 721
| ||| ||||| |||||||||||||| |||| ||||||||| |||||||||| || ||
Sbjct 618 TCAAGAACTTGAAGTTACTTTGAAGAGATTAAGGGGAGAAAATAGTGATATTCTTGAGGA 677
Query 722 AGCAGCTGAAATCAGAGAAACAGTGGAAACCTCTAGAAGAGAATCTCGAAGTGGACTAAA 781
||||||||||||||||||||||||||||| || |||| ||| |||||||||||| |||
Sbjct 678 AGCAGCTGAAATCAGAGAAACAGTGGAAATATCCAGAAAAGAGTCTCGAAGTGGAATAAG 737
Query 782 AGATTTGTTCAATATGA-AAAACGCACATCCGTTAATCATTGGATTGGGCCTAATGCTCT 840
||| |||||| |||| | |||||||||| ||||||||||||| ||||| ||||||| |
Sbjct 738 AGACTTGTTCCATAT-AGGAAACGCACATTCGTTAATCATTGGCTTGGGATTAATGCTTT 796
Query 841 TGCAACAATTTTGTGGGAGTTCGGCGATAAGTGCTTATGCTGCTCGTATTTTCGACACAG 900
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 797 TGCAACAATTTTGTGGGAGTGCGGCGATAAGTGCTTATGCTGCTCGTATTTTCGACAAAG 856
Query 901 CCGGTTTTCCAAGCGACATAGGAACATCCATCCTTGCAGTTATTTTGGTACCGCAATCTA 960
| |||||||||||||||||||||||| ||| ||| ||||||||| || ||||||||||||
Sbjct 857 CAGGTTTTCCAAGCGACATAGGAACAACCACCCTCGCAGTTATTCTGATACCGCAATCTA 916
Query 961 TTA-TTGTCATGTTTGCCGTCGACCGATGTGGACGCCGACCACTT-TTGATGAGCTCTTC 1018
| | |||||||||| | |||||||| || |||||| |||||||| || |||| |||||
Sbjct 917 T-AGTTGTCATGTTAACTGTCGACCGCTGGGGACGCAGACCACTTCTT-ATGATTTCTTC 974
Query 1019 TATCGGTCTGTGCATATGTTCATTTTTAATTGGCCTCTCTTACTATCTTCAGAACCATGG 1078
||||||| |||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 975 TATCGGTATGTGCATATGCTCATTTTTAATTGGCCTTTCTTACTATCTTCAGAAGCATGG 1034
Query 1079 TGATTTTCAAGA-GTTTTGTTCCCCTATCTTAATCGTCGGTTTAGTGGGTTATGTCTTAT 1137
||| ||||| || |||||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 1035 TGAATTTCA-GAAGTTTTGTTCCGTTATGTTAATCGTCGGTTTAGTGGGTTATGTCTCAT 1093
Query 1138 CCTTTGGCATTGGTCTAGGTGGACTACCATGGGTTATTATGTCTGAGGTGTTTCCGGTGA 1197
| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1094 CTTTTGGCATTGGTCTAGGTGGACTACCATGGGTTATCATGTCTGAGGTATTTCCGGTGA 1153
Query 1198 ATGTGAAAATTACCGCCGGTAGTCTTGTAAC-AGTGTCAAACTGGTTTTTCAGTTGGATT 1256
|||||||||| ||||||||||| |||||||| | ||||||| |||||||| | ||||||
Sbjct 1154 ATGTGAAAATCACCGCCGGTAGCCTTGTAACGA-TGTCAAATTGGTTTTTTAATTGGATC 1212
Query 1257 ATCATTT-TCAGTTTTAATTTCATGATGCAATGGAGTGCTTTCGGAACATATTTCATATT 1315
||||||| | ||||| ||||||||||| || ||||| |||| ||||||||||||||||||
Sbjct 1213 ATCATTTAT-AGTTTCAATTTCATGATACAGTGGAGCGCTTCCGGAACATATTTCATATT 1271
Query 1316 TGCTGGAGTTTCTCTGATGTC-ATTCGTATTTGTATGGACTTTGGTGCCTGAGACGAAAG 1374
| ||||||||||| || || | || |||||| ||||||| |||||||||||||||||||
Sbjct 1272 TTCTGGAGTTTCTTTGGTGACGAT-CGTATTCATATGGACATTGGTGCCTGAGACGAAAG 1330
Query 1375 GCCGAACACTTGAAGATATTCAA-CAATCACTAGGCCAACTTTCATAA 1421
|||||||||| ||||| |||||| || ||| ||| || |||||| |||
Sbjct 1331 GCCGAACACTCGAAGAGATTCAAGCA-TCATTAGTCCGACTTTCGTAA 1377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62810814005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5