BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G08920.2 Length=1917 Score E Sequences producing significant alignments: (Bits) Value Ahg470966 jgi|Araly1|470966|fgenesh2_kg.1__920__AT1G08920.2 2730 0.0 > Ahg470966 jgi|Araly1|470966|fgenesh2_kg.1__920__AT1G08920.2 Length=1842 Score = 2730 bits (1478), Expect = 0.0 Identities = 1755/1881 (93%), Gaps = 49/1881 (3%) Strand=Plus/Plus Query 1 GTGACACAAAAGAAAAGATTGGGGAAGCTGACCTCTGCCTTTCCTCCTCCATTAATCAAG 60 |||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||| Sbjct 1 GTGACACAAAAGAAAAGA-T-GGGAAGCTGACCTCTGGCTTTCCTCCTCCATTAATCAAG 58 Query 61 GAATATAAATCAGCTTTAAACTCAGTCCTCTTATGGAAGACAAAAAAGCAAATATTTATT 120 |||||||||| |||||||||||||||||||| |||||| ||||||||||||||| |||| Sbjct 59 GAATATAAATGAGCTTTAAACTCAGTCCTCTAATGGAACCCAAAAAAGCAAATATATATT 118 Query 121 CGTAAATATAACTTCAGAACCCTTTCAACAAAACTCTCTCTGTTCT-TTCTCCGTGGAGA 179 |||||||||||||||| || ||||| || |||| | |||||||| | || |||| ||||| Sbjct 119 CGTAAATATAACTTCAAAAACCTTT-AAGAAAATTATCTCTGTTATCTT-TCCGAGGAGA 176 Query 180 AGTT--A-AAGATGACGATGTCGGAGAACTCAAGAAACTTGGAAGCTGGTTTGCTACTGA 236 |||| | |||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 177 AGTTAAAGAAGATGACTATGTCGGAGAACTCAAGAAACTTGGAAGCTGGTTTGTTACTGA 236 Query 237 GGAAGAACCAAAACGACATCAACGAATGTCGTATCACTGCTGTTGTACTTTTCAGTACTT 296 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 237 GGAAGAACCAAAACGACATCAACGAATGTCGTATCACTGCTGTTGTACTTTTCAGCACTT 296 Query 297 TCGTTTCTGTTTGTGGCTCTTTCTGCTTCGGTTGTGCGGCAGGTTATTCATCAGTTGCTC 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 297 TCGTTTCTGTTTGTGGCTCTTTCTGCTTCGGTTGTGCGGCAGGTTATTCATCAGTTGCTC 356 Query 357 AAACAGGGATCATAAATGATTTAGGTCTCTCTGTTGCACAATACTCCATGTTTGGTTCAA 416 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 357 AAACAGGGATCATAAATGATTTAGGCCTCTCTGTTGCACAATACTCCATGTTTGGTTCAA 416 Query 417 TCATGACTTTTGGAGGAATGATTGGTGCCATCTTCAGCGGGAAAGTTGCAGATCTCATGG 476 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 417 TCATGACTTTTGGAGGAATGATTGGTGCCATCTTCAGCGGGAAAGTCGCAGATCTCATGG 476 Query 477 GTCGAAAAGGGACTATGTGGTTTGCTCAAATTTTCTGCATCTTCGGTTGGGTTGCAGTAG 536 |||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 477 GTCGCAAAGGGACAATGTGGTTTGCTCAAATTTTCTGCATCTTCGGTTGGCTTGCAGTAG 536 Query 537 CATTAGCAAAAGACTCCATGTGGCTTGATATTGGAAGACTATCCACAGGATTTGCAGTTG 596 |||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 537 CATTTGCAAATGACTCCATGTGGCTTGATATAGGAAGACTATCCACAGGATTTGCAGTTG 596 Query 597 GTTTATTAAGCTATGTGATACCAGTTTACATTGCAGAAATAACACCAAAACATGTTCGAG 656 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 597 GTTTATTAAGCTATGTGATACCAGTTTATATTGCAGAAATAACACCAAAACATGTTCGAG 656 Query 657 GAGCGTTTGTATTTGCTAATCAGCTGATGCAGAGTTGTGGATTGTCTTTATTCTACGTCA 716 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 657 GAGCGTTTGTATTTGCTAATCAGCTGATGCAGAGTTGTGGGTTGTCTTTATTCTACGTCA 716 Query 717 TTGGAAATTTTGTTCATTGGCGTAACTTGGCCTTAATCGGTCTCATTCCATGTGCGTTGC 776 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 717 TTGGAAATTTTGTTCATTGGCGTAAATTGGCCTTAATCGGTCTCATTCCATGTGCTTTGC 776 Query 777 AAGTTGTGACTTTGTTCTTTATTCCAGAGTCCCCTAGACTACTGGGAAAATGGGGACATG 836 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | || Sbjct 777 AAGTTGTGACTTTGTTCTTTATTCCAGAGTCCCCTCGACTACTGGGAAAATGGGGGCGTG 836 Query 837 AAAAAGAATGTAGAGCTTCATTGCAAAGTCTTCGCGGAGATGATGCAGATATCTCTGAAG 896 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 837 AAAAAGAATGTAGAGCTTCATTGCAACGTCTTCGCGGAGATGATGCAGATATCTCTGAAG 896 Query 897 AAGCCAACACTATCAAAGAAACCATGATCTTGTTTGATGAAGGACCAAAATCGCGGGTTA 956 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 897 AAGCCAACACTATCAAAGAAACCATGATATTGTTTGATGAAGGACCAAAATCGCGGGTTA 956 Query 957 TGGATTTGTTTCAGAGAAGATATGCTCCATCTGTTGTTATTGGTGTGGGACTAATGCTTC 1016 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 957 TGGATTTGTTTCAGAGAAGATATGCTCCATCTGTTGTTATTGGTGTGGGACTAATGCTTC 1016 Query 1017 TACAACAACTCTCTGGAAGCTCAGGACTTATGTACTATGTCGGTAGCGTATTTGATAAAG 1076 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1017 TACAACAACTCTCTGGAAGCTCAGGACTTATGTACTATGTCGGTAGCGTATTTGACAAAG 1076 Query 1077 GAGGGTTTCCAAGCAGCATTGGCTCAATGATTCTTGCAGTGATCATGATACCAAAAGCTC 1136 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1077 GAGGATTTCCAAGCAGCATTGGCTCAATGATTCTTGCAGTGATCATGATACCAAAAGCTA 1136 Query 1137 TATTGGGTCTGATTTTGGTTGAGAAAATGGGACGAAGACCACTTCTATTGATGAATGATC 1196 | |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 1137 TTTTGGGTCTGATTCTGGTTGAAAAAATGGGACGAAGACCACTTCTATTGATGAATAATC 1196 Query 1197 TTTATTTAC-A--GGCCTCTACCGGTGGAATGTGCTTTTTCAGCTTGCTCCTCAGTTTTT 1253 ||| || || | ||||||||||||||||||||||||||||||||||||||| | | Sbjct 1197 TTT-TTAACCACAGGCCTCTACCGGTGGAATGTGCTTTTTCAGCTTGCTCCTTA-T---- 1250 Query 1254 CCTTCTGCTTTCGGTCATATGGCATGCTTGATGAGCTCACTCCGATTTTCACATGTATCG 1313 | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1251 C---------------ATATGGCATGCTTGATGAGCTCACTCCGATTTTCACATGTATCG 1295 Query 1314 GTGTAGTGGGTTTCATCTCTTCATTTGCCGTAGGCATGGGAGGCTTACCATGGATCATCA 1373 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1296 GTGTAGTGGGTTTCATCTCTTCATTTGCCGTAGGCATGGGAGGCTTACCATGGATCATCA 1355 Query 1374 TGTCTGAGATATTCCCAATGAATGTTAAAGTTTCTGCTGGGACTCTGGTTACCTTAGCCA 1433 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 1356 TGTCTGAGATATTCCCAATGAATGTTAAAGTTTCTGCTGGGACTCTGGTTACTTTGGCCA 1415 Query 1434 ACTGGTCCTTTGGTTGGATTGTTGCTTTCGCCTACAACTTCATGCTAGAGTGGAACGCAT 1493 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 1416 ACTGGTCCTTTGGTTGGATTGTAGCTTTTGCCTACAACTTCATGCTAGAGTGGAACGCAT 1475 Query 1494 CAGGAACGTTCTTGATCTTCTTTACTATATGTGGTGCGGGTATAGTCTTTATTTATGCGA 1553 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || | Sbjct 1476 CAGGAACGTTCTTGATCTTCTTTACTATATGCGGTGCGGGTATAGTCTTTATTTACGCAA 1535 Query 1554 TGGTACCCGAAACTAAAGGAAGAACATTGGAAGATATACAAGCTTCTCTTACAGATTTTC 1613 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1536 TGGTACCCGAAACTAAAGGAAGAACATTGGAAGATATACAAGCTTCTCTTACAGATTTTC 1595 Query 1614 TACAATGAGATCAAGTTTGACTTGTTTAAAGTTATTCATTTTTTCTTAGATTACAATTGG 1673 |||||||||| ||| ||| || |||||||||||||||||||||| || ||||| |||||| Sbjct 1596 TACAATGAGAACAACTTTTACCTGTTTAAAGTTATTCATTTTTT-TTGGATTAAAATTGG 1654 Query 1674 GGGGAGGTTTATAGTTTTTTGTTGTAATTGTTACCTCATTTGATGTGCAATTGAGAAAGA 1733 |||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||| Sbjct 1655 AGGGAGGTTTATAGTTTTT-GTTATAATTGTTACCTCATTTGATG-GCAATTGAGAAAGA 1712 Query 1734 GATCACTTGAACATAAGGTTTAGATATCTCTCTGTCTCAGTAAATTAGCCCAATGTATGT 1793 ||||||| | |||||||||||||||||||| |||| | | || ||| | | Sbjct 1713 GATCACT--A---TAAGGTTTAGATATCTCTCTTTCTCTCTGTCTCAGTT-AATTTCTCC 1766 Query 1794 A-TAGTATAGTCCCAGTTTTACACCCaaaaaa-aaGAAATATAAAATTGAACTTTAAGGT 1851 | | |||| || |||||||| |||||| ||| |||||||||||||||||||| || Sbjct 1767 AAT-GTAT-GTATTT-TTTTACAC--AAAAAAGAAGTAATATAAAATTGAACTTTAAAGT 1821 Query 1852 -ATTGGCTTTTTGCTTTCATT 1871 | |||||||||||||||||| Sbjct 1822 TACTGGCTTTTTGCTTTCATT 1842 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72028653295 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5