BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G08930.1 Length=1874 Score E Sequences producing significant alignments: (Bits) Value Ahg919640 jgi|Araly1|919640|scaffold_100921.1 2608 0.0 > Ahg919640 jgi|Araly1|919640|scaffold_100921.1 Length=1531 Score = 2608 bits (1412), Expect = 0.0 Identities = 1494/1534 (97%), Gaps = 4/1534 (0%) Strand=Plus/Plus Query 117 gaagcaggaggagactttttggaatggagagacaaaagagCATGGAAAAAGGGTTACTCA 176 |||||| || ||| ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 GAAGCA-GA--AGATTTTTTGGAATGGAGAGACAAAAGAGCATGGAAAAAGGGTTACTGA 57 Query 177 GGAAGAGCTTAAGCATACGTGAGAGAAAGTTCCCTAACGAAGACGCTTTCTTAGAATCCG 236 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 58 GAAAGAGCTTAAGCATACGAGAGAGAAAGTTCCCTAACGAAGACGCTTTCTTAGAAGCCG 117 Query 237 GTTTATCGAGGAAGTCTCCGCGAGAGGTCAAGAAACCTCAAAACGACGATGGTGAATGTC 296 ||||||||||||| |||||| ||||||||||||||||||| |||||||||| ||| |||| Sbjct 118 GTTTATCGAGGAAATCTCCGAGAGAGGTCAAGAAACCTCATAACGACGATGATGATTGTC 177 Query 297 GTGTTACCGCCTCTGTTTTCCTCAGCACCTTTGTTGCCGTATCAGGCTCCTTCTGTACCG 356 |||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 178 GTGTCACCGCCTCTGTTTTCCTCAGCACCTTTGTTGCCGTCTCTGGCTCCTTCTGTACCG 237 Query 357 GTTGTGGCGTTGGTTTTTCATCGGGTGCACAAGCAGGGATTACCAAAGATTTATCTCTCT 416 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 238 GTTGTGGCGTTGGTTTTTCATCGGGTGCTCAAGCAGGGATTACCAAAGATTTATCTCTCT 297 Query 417 CCGTTGCAGAATACTCAATGTTCGGGTCGATCTTGACATTAGGAGGCTTGATCGGTGCAG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 CCGTTGCAGAATACTCAATGTTCGGGTCGATCTTGACATTAGGAGGCTTGATCGGTGCAG 357 Query 477 TATTCAGCGGTAAAGTCGCTGATGTCTTGGGAAGAAAACGGACGATGTTGTTTTGCGAAT 536 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 358 TATTCAGCGGTAAAGTCGCCGATGTCTTGGGAAGAAAACGGACGATGTTGTTTTGCGAAT 417 Query 537 TCTTCTGTATCACAGGCTGGCTTTGTGTAGCATTGGCTCAGAATGCAATGTGGCTGGACT 596 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 418 TCTTCTGTATCACAGGCTGGCTTTGTGTAGCACTGGCTCAGAATGCAATGTGGTTGGACT 477 Query 597 GTGGAAGATTGTTACTTGGAATCGGCGTTGGTATATTTAGCTACGTGATTCCGGTGTATA 656 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 478 GTGGAAGATTGTTACTTGGAATCGGCGTTGGTTTATTTAGCTACGTGATTCCGGTGTATA 537 Query 657 TAGCCGAAATTGCACCTAAACATGTCCGAGGATCGTTTGTGTTCGCCAATCAGTTGATGC 716 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 TAGCCGAAATTGCACCAAAACATGTCCGAGGATCGTTTGTGTTCGCCAATCAGTTGATGC 597 Query 717 AAAATTGCGGAATTTCACTCTTCTTCATCATTGGCAATTTTATTCCATGGAGACTACTAA 776 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 AAAATTGCGGAATTTCACTCTTCTTCATCATTGGCAATTTTATTCCATGGAGACTACTAA 657 Query 777 CAGTAGTCGGATTGGTGCCATGTGTGTTCCACGTCTTTTGTTTATTTTTCATCCCCGAAT 836 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 CAGTAGTCGGATTGGTGCCATGTGTGTTCCACGTCTTTTGTTTATTTTTCATCCCCGAAT 717 Query 837 CTCCAAGATGGCTGGCGAAGTTAGGTCGTGATAAAGAATGCCGATCTTCGTTGCAACGCC 896 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 CTCCAAGATGGCTGGCGAAGTTAGGTCGTGATAAAGAATGCCGATCTTCGTTGCAACGCC 777 Query 897 TTAGGGGATCTGACGTCGATATTTCTCGTGAAGCAAACACAATTAGAGATACCATTGACA 956 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 TTAGGGGATCTGACGTCGATATTTCTCGTGAAGCAAACACAATTAGAGATACCATTGACA 837 Query 957 TGACAGAAAACGGTGGTGAAACTAAGATGTCTGAATTGTTTCAGAGACGATACGCATATC 1016 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 838 TGACAGAAAACGGTGGTGAAAGTAAGATGTCTGAATTGTTTCAGAGACGATACGCATATC 897 Query 1017 CGTTAATTATCGGAGTTGGTTTAATGTTTTTGCAACAATTGTGTGGGAGCTCCGGTGTTA 1076 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 CGTTAATTATCGGAGTTGGTTTAATGTTTTTGCAACAATTGTGTGGGAGCTCCGGTGTTA 957 Query 1077 CCTATTATGCTAGTAGCCTCTTCAACAAAGGAGGATTTCCAAGTGCTATTGGCACATCCG 1136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 CCTATTATGCTAGTAGCCTCTTCAACAAAGGAGGATTTCCAAGTGCTATTGGCACATCCG 1017 Query 1137 TAATAGCCACAATTATGGTTCCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAAATGG 1196 |||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||| Sbjct 1018 TAATAGCCACAATTATGGTTCCGAAAGCGATGCTGGCAACAATCCTAGTCGATAAAATGG 1077 Query 1197 GGAGGAGAACGCTCCTAATGGCTTCTTGTTCTGCAATGGGTTTGAGTGCTTTGCTCTTAA 1256 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1078 GGAGGAGAACGCTTCTAATGGCTTCTTGTTCTGCAATGGGTTTGAGTGCTTTGCTCTTAA 1137 Query 1257 GTGTTTCTTACGGTTTCCAGTCGTTTGGCATTCTTCCAGAACTCACTCCCATCTTCACTT 1316 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1138 GTGTTTCTTACGGTTTCCAGTCCTTTGGCATTCTTCCAGAACTCACTCCCATCTTCACTT 1197 Query 1317 GCATCGGCGTCTTGGGTCACATTGTGTCATTTGCCATGGGAATGGGAGGACTACCATGGA 1376 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1198 GCATCGGCGTATTGGGTCACATTGTGTCATTTGCGATGGGAATGGGAGGACTACCATGGA 1257 Query 1377 TTATAATGGCTGAGATATTTCCGATGAATGTGAAAGTGTCAGCTGGGACCTTAGTTACTG 1436 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | Sbjct 1258 TTATAATGGCTGAGATATTTCCTATGAATGTGAAGGTGTCAGCTGGGACCTTAGTTACCG 1317 Query 1437 TAACCAATTGGTTATTTGGTTGGATTATCACATACACTTTCAATTTTATGCTAGAATGGA 1496 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 1318 TAACCAATTGGTTATTTGGTTGGATTATCACATATACTTTCAATTTCATGCTAGAATGGA 1377 Query 1497 ATGCATCAGGAATGTTCCTCATCTTCTCAATGGTCTCCGCCAGTTCGATCGTATTTATAT 1556 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1378 ATGCATCAGGAATGTTCCTTATCTTCTCAATGGTCTCCGCCAGTTCGATCGTATTTATAT 1437 Query 1557 ACTTTTTGGTACCTGAGACAAAAGGCCGATCACTTGAAGAAATACAAGCACTGCTCAACA 1616 ||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||| Sbjct 1438 ACTTTTTGGTACCTGAGACGAAAGGCCGGTCACTTGAAGAAATACAAGCATTGCTCAACA 1497 Query 1617 ACTCTGTGCAATAATATCAtttttctttt-tctt 1649 ||||||||||||||||||||||||||||| |||| Sbjct 1498 ACTCTGTGCAATAATATCATTTTTCTTTTCTCTT 1531 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70390772760 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5