BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08970.4
Length=1613
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470975 jgi|Araly1|470975|fgenesh2_kg.1__929__AT1G08970.2 1452 0.0
Ahg474760 jgi|Araly1|474760|fgenesh2_kg.1__4714__AT1G54830.1 529 3e-149
> Ahg470975 jgi|Araly1|470975|fgenesh2_kg.1__929__AT1G08970.2
Length=1163
Score = 1452 bits (786), Expect = 0.0
Identities = 959/1037 (92%), Gaps = 34/1037 (3%)
Strand=Plus/Plus
Query 595 GTAGTGAATGGATCAACAAGACCATGGACAGTCTGGAGCTATGAACTATGGCACAAACCC 654
|||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 143 GTAGAGAATGGATCAACAAGAACATGGACAGTCTGGAGCTATCAACTATGGCACAAACCC 202
Query 655 ATACCAAACCAA-CCCGATGAGCACCACTGCTGCTACTGTAGCAGGAGGTGCGGCACAAC 713
|||||||||||| ||| |||||||||||||||||||||||| | || ||||||||||||
Sbjct 203 ATACCAAACCAATCCC-ATGAGCACCACTGCTGCTACTGTACCCGGGGGTGCGGCACAAA 261
Query 714 CAGGCCAGCTGGCGTTCCACCAGATCCATcagcagcagcagcagcaacagctggcacagc 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 262 CAGGCCAGCTGGCGTTCCACCAGATCCATCAGCAGCAGCAGCAGCAACAGCTGGCTCAGC 321
Query 774 agcTTCAAGCATTTTGGGAGAACCAATTCAAAGAGATTGAGAAGACTACCGATTTCAAGA 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 AGCTTCAAGCATTTTGGGAGAACCAATTCAAAGAGATTGAGAAGACTACCGATTTCAAGA 381
Query 834 ACCACAGCCTTCCCCTTGCGAGAATCAAGAAAATCATGAAAGCGGATGAAGATGTCCGTA 893
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 382 ACCACAGCCTTCCGCTTGCGAGAATCAAGAAAATCATGAAAGCGGACGAAGATGTCCGTA 441
Query 894 TGATCTCGGCTGAGGCGCCTGTCGTGTTTGCAAGGGCCTGTGAGATGTTCATCCTGGAGC 953
||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||
Sbjct 442 TGATCTCGGCTGAGGCGCCTGTCGTGTTTGCAAGGGCATGCGAGATGTTCATCTTGGAGC 501
Query 954 TGACACTCAGGTCGTGGAACCACACTGAGGAGAATAAGAGGCGGACGTTGCAGAAGAACG 1013
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 502 TGACACTCAGGTCGTGGAACCACACTGAGGAGAACAAGAGGCGGACGTTGCAGAAGAACG 561
Query 1014 ATATTGCTGCTGCTGTGACTAGAACCGATATTTTTGATTTCCTTGTGGATATTGTTCCCC 1073
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 562 ATATTGCCGCTGCTGTGACTAGAACCGATATCTTTGATTTCCTTGTGGATATTGTTCCCC 621
Query 1074 GGGAGGATCTCCGAGATGAAGTCTTGGGAAGTATTCCGAGGGGCACTGTCCCGGAAGCTG 1133
||||||||||| | ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 622 GGGAGGATCTCAGGGATGAGGTCTTGGGAAGTATTCCGAGGGGGACTGTCCCGGAAGCTG 681
Query 1134 CTGCTGCTGGTTACCCGTATGGATACTTGCCTGCAGGAACTGCTCCAATAGGAAATCCGG 1193
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 682 CTGCTGCTGGTTACCCGTATGGATACTTGCCTGCAGGAACTGCTCCAATAGGGAACCCAG 741
Query 1194 GAATGGTTATGGGTAATCCCGGTGGTGCGTATCCACCTAATCCTTATATGGGTCAACCAA 1253
||||||||||||||||||| |||||||| || ||||||||||| |||||||||||||| |
Sbjct 742 GAATGGTTATGGGTAATCCTGGTGGTGCCTACCCACCTAATCCGTATATGGGTCAACCGA 801
Query 1254 TGTGGCAACAACAGGCACCTGACCAACCTGACCAGGAAAATTAGCAAGAAACTCGTTCTA 1313
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 802 TGTGGCAACAACAGGCACCTGACCAACCTGACCAAGATAATTAGCAAGAAACTCGTTCAA 861
Query 1314 GTCTCGTCCA-G-G---T---GAAAGGAGGGAGACCTTAGACAAGAAAATGAAAAGAACA 1365
|||||||||| | | | ||||||||| |||||||||||||||||||||||||||||
Sbjct 862 GTCTCGTCCATGTGGAATTAAGAAAGGAGG-AGACCTTAGACAAGAAAATGAAAAGAACA 920
Query 1366 TATCAGAATTGTCAAATTGGGTGTTGTAGAAGAATCTAAAGTGTTTATGTCTATCGATCC 1425
|||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 921 TATCAGAATTTTCAAATTGGGTGTTGTAGAAGAGTCTAA-GTGTTTATGTCTATCGATCC 979
Query 1426 TTTTCT-AAACGAGAAATTTAGGGATGAACCAGAAAGAAGAATGTATAAACTGTAAGAAA 1484
||| || ||| |||||| ||| ||| |||||||||||||||| ||||||||||||||||
Sbjct 980 TTT-CTTAAAGGAGAAACTTACGGA--AACCAGAAAGAAGAATCTATAAACTGTAAGAAA 1036
Query 1485 CAAGTGTGCTTTTGACAAAAGttttttt-ATTTGAATGTTAATTTCTGTGTCTTTATCAC 1543
|||||||||||| |||||| |||||||| |||||||||||||||| | | ||||||| ||
Sbjct 1037 CAAGTGTGCTTT-GACAAA-GTTTTTTTTATTTGAATGTTAATTTGTCTATCTTTATTAC 1094
Query 1544 ACATATTAAGTTATTATCCACAAAATGTATCTCATTGGATATTTAAAA-------CAAAA 1596
|| | | | ||| | || ||||| ||||||||||| |||||||||| |||||
Sbjct 1095 AC-T-T-A--TTA--ACCC-CAAAAAGTATCTCATTGAATATTTAAAAATTAAAACAAAA 1146
Query 1597 GGACAATAATATTAAGG 1613
|||||||||||||||||
Sbjct 1147 GGACAATAATATTAAGG 1163
> Ahg474760 jgi|Araly1|474760|fgenesh2_kg.1__4714__AT1G54830.1
Length=865
Score = 529 bits (286), Expect = 3e-149
Identities = 468/552 (85%), Gaps = 27/552 (5%)
Strand=Plus/Plus
Query 730 CCACCAGATCCATcagcagcagcagcagcaacagctggcacagcagcTTCAAGCATTTTG 789
||| |||||||| | ||||| || ||||| ||||| | || ||||||||| |||| ||
Sbjct 297 CCATCAGATCCA-C--CAGCAACAACAGCAGCAGCTAACTCAACAGCTTCAATCATTCTG 353
Query 790 GGAGAAC-CAATTCAAAGAGATTGAGAAGACTACCGATTTCAAGAACCACAGCCTTCCCC 848
|||| || |||||||||||||||||||| || || |||||||||||||| |||||| ||
Sbjct 354 GGAG-ACTCAATTCAAAGAGATTGAGAAAACCACTGATTTCAAGAACCATAGCCTT-CCA 411
Query 849 TT-GCGAGAATCAAGAAAATCATGAAAGCGGATGAAGATGTCCGTATGATCTCGGCTGAG 907
|| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 412 TTGGCGAGAATCAAGAAGATCATGAAAGCTGATGAAGATGTGCGTATGATCTCGGCCGAG 471
Query 908 GCGCCTGTCGTGTTTGCAAGGGCCTGTGAGATGTTCATCCTGGAGCTGACACTCAGGTCG 967
|||||||| ||||| || ||||| ||||||||||| || |||||||| || | |||||
Sbjct 472 GCGCCTGTTGTGTTCGCTAGGGCTTGTGAGATGTTTATTCTGGAGCTTACGTTGAGGTCT 531
Query 968 TGGAACCACACTGAGGAGAATAAGAGGCGGACGTTGCAGAAGAACGATATTGCTGCTGCT 1027
|||||||||||||||||||| || ||| |||||||||||||||||||||| || ||||||
Sbjct 532 TGGAACCACACTGAGGAGAACAAAAGGAGGACGTTGCAGAAGAACGATATCGCGGCTGCT 591
Query 1028 GTGACTAGAACCGATATTTTTGATTTCCTTGTGGATATTGTTCCCCGGGAGGATCTCCGA 1087
||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 592 GTGACTAGAACTGATATCTTTGATTTCCTTGTGGATATTGTTCCGCGGGAGGATCTTCGT 651
Query 1088 GATGAAGTCTTGGGAAGTATTCCGAGGGGCACTGTCCCGGAAGCTGCT---GCTGCTGGT 1144
|||||||||||||| || || | | || | ||||||||| ||||| |||
Sbjct 652 GATGAAGTCTTGGGTGGTGTT---A---G---TG---CTGAAGCTGCTACAGCTGCAGGT 699
Query 1145 TACCCGTATGGATACTTGCCTGCAGGAACTGCTCCAATAGGAAATCCGGGAATGGTTATG 1204
|| |||||||||||||||||| | ||||| |||||||| || ||||||||||||||||||
Sbjct 700 TATCCGTATGGATACTTGCCTCCTGGAACAGCTCCAATTGGGAATCCGGGAATGGTTATG 759
Query 1205 GGTAATCCCGGTGGTGCGTATCCACCTAATCCTTATATGGGTCAACCAATGTGGCAACAA 1264
||||| ||||| | | ||||| ||||| || |||||||||||||||||||||||||||
Sbjct 760 GGTAACCCCGGCG---CATATCCGCCTAACCCGTATATGGGTCAACCAATGTGGCAACAA 816
Query 1265 CA-GGCACCTGA 1275
|| || ||||||
Sbjct 817 CAAGG-ACCTGA 827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60449218815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5