BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G09020.1 Length=2302 Score E Sequences producing significant alignments: (Bits) Value Ahg470981 jgi|Araly1|470981|fgenesh2_kg.1__935__AT1G09020.1 3397 0.0 > Ahg470981 jgi|Araly1|470981|fgenesh2_kg.1__935__AT1G09020.1 Length=2240 Score = 3397 bits (1839), Expect = 0.0 Identities = 2164/2306 (94%), Gaps = 81/2306 (4%) Strand=Plus/Plus Query 7 TTCTTCACCTTGAAAGACCATTAACATCATTCCTTGCCCAGATCCAAACAATGCCATCTC 66 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2 TTCTTCACCTTGAAAGACCATTAACATCATTCCTTCCCCAGATCCAAACAATGCCATCTC 61 Query 67 CACTCTCTCTATTTAGGGTTCTCTCCAACTTTTCAAATCCCTAATTCTTGCTCCCTCCCT 126 ||||||||||||||||||||||||||| |||||||||||||||||||||| || ||| Sbjct 62 CACTCTCTCTATTTAGGGTTCTCTCCATCTTTTCAAATCCCTAATTCTTG----CT-CCT 116 Query 127 TCAATCAATTCCGATCATCATCGAGGTCTCTCTACTCCCCGAATTTAAAGATCAG-AGCC 185 || | | | |||||| | | ||||||||||||||| |||||||||||||| |||| Sbjct 117 TC---C---T-C-ATCATC--C-ACGTCTCTCTACTCCCCCAATTTAAAGATCAGAAGCC 165 Query 186 GCGACTTCCTCTGCCTTCTTTTCCTCGGAATTTTTCAGCTACGTTTTCCAGGTGGTGTGT 245 |||| |||||||| | ||||||||||||| | || | ||| |||||| ||||| Sbjct 166 GCGAATTCCTCTGGCAACTTTTCCTCGGAA----T-AG----GGTTT-CAGGTGTTGTGT 215 Query 246 ATTGTCAATCAGTTGACCTTTGCTTTTGTAGCCAGATCGTTCGTGCTTTGAG--TTTAGG 303 |||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 216 ATTGTC-ATCAGTTGACCTTTGCTTTTATAGCCAGATCGTTCGTGCTTTGAGTTTTTAGG 274 Query 304 GCTCTTTTACAAGGTTTCGTGTTGGTGGAATTTC-TCTACCTAGGTTTGGGGGAAGAGTT 362 ||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| Sbjct 275 GCTCTTTTACAAGGTTTCGTGTTGGTGAAATTTCTTCTACCTAGG-TTGGGGGAAGAGTT 333 Query 363 CAGTAATTTCGTTGTAGATCGTGATTTGGGCTTTTAGGGTTTCGGTTTACTGGTTGCTGG 422 |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 334 GAGTAATTTCGTTGTAGATCGTGATTTGGGCTTTTAGGGTTTCGG-TTACTGGTGGCTGG 392 Query 423 AATTTATGGTAGCGTTATTGAATTCGGACTCTCTGCATGTGTAAGCGTTGAAGTTTG-AA 481 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 393 AATTTATGGTAGCGTTATTGAATTCGGACTCTCTGCATGTGTAAGCGTTGAAG-TTGCAA 451 Query 482 GTTTCACCGGGTTTTGTTTCTTCTGCTGAAGAGTC-GAGATTATTT-TACGCATTAAGAA 539 ||||||||||||||||||||||||||| ||||||| |||| |||| |||||||| |||| Sbjct 452 GTTTCACCGGGTTTTGTTTCTTCTGCTCAAGAGTCTGAGA-CATTTGTACGCATTTAGAA 510 Query 540 TCGATTCAGAAGG-TTTTTAGGAATTAGTTTCTGTGGATTGTAACTATAT-AACTACTGG 597 |||||| || ||| |||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 511 TCGATTGAG-AGGATTTTTAGGAATTAGTTTCTGTGGATTGTAACTATATAAAC-ACTGG 568 Query 598 GAGGGGATGTTTGGTTCTACATTGGATAGCAGCCGTGGAAACAGCGCTGCCTCAGGGCAG 657 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 569 GAGGGGATGTTTGGTTCTACATTGGATAGCAGCCGTGGAAACAGCGCTGCCTCAGGGCAG 628 Query 658 CTTCTTACTCCGACACGCTTCGTGTGGCCTTATGGAGGTAGAAGAGTCTTCCTAAGCGGA 717 |||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||| Sbjct 629 CTTCTTACTCCGACCCGCTTCGTGTGGCCTTATGGAGGTCGAAGGGTCTTCCTAAGCGGA 688 Query 718 TCTTTCACCAGGTGGACAGAGCATGTGCCAATGTCACCGCTCGAGGGCTGCCCTACTGTT 777 ||||||||||||||||| || |||||||||||||||||||| ||||||||||| |||||| Sbjct 689 TCTTTCACCAGGTGGACTGAACATGTGCCAATGTCACCGCTTGAGGGCTGCCCGACTGTT 748 Query 778 TTTCAAGTCATTTGCAACTTGACGCCAGGATATCATCAGTATAAGTTTTTTGTTGATGGG 837 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 749 TTTCAAGTCATTTGCAACTTGACGCCAGGATATCATCAGTATAAGTTTTTTGTTGATGGG 808 Query 838 GAATGGCGGCACGATGAGCACCAACCATTTGTAAGCGGAAATGGTGGAGTAGTGAATACA 897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 809 GAATGGCGGCACGATGAGCACCAACCATTTGTAAGCGGAAATGGTGGAGTAGTGAATACA 868 Query 898 ATATTTATAACTGGGCCAGATATGGTTCCTGCTGGTTTTAGCCCAGAGACACTGGGCCGG 957 |||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||| Sbjct 869 ATATTTATAACTGGACCCGATATGGTTCCTGCTGGTTTTAGCCCAGAGACACTCGGCCGG 928 Query 958 TCGAATATGGATGTGGATGATGTCTTCCTGCGAACGGCTGACCCGTCCCAGGAAGCTGTT 1017 ||||||||||||||||||||||||||||||||||||||||| || | | | Sbjct 929 TCGAATATGGATGTGGATGATGTCTTCCTGCGAACGGCTGA------CC------C-G-T 974 Query 1018 CCTAGGATGTCGGGGGTTGATTTGGAGCTTTCTCGTCACCGCATATCGGTTTTATTGTCA 1077 | | ||||||||||||||| ||||||||||||| ||||| |||||||||||| Sbjct 975 -C----A-----GGGGTTGATTTGGAGGTTTCTCGTCACCGTATATCTGTTTTATTGTCA 1024 Query 1078 ACCCGCACTGCATATGAGCTGCTCCCAGAATCGGGCAAGGTTATTGCATTGGATGTTAAT 1137 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1025 ACCCGTACTGCATATGAGCTGCTCCCAGAATCGGGCAAGGTTATTGCATTGGATGTTAAT 1084 Query 1138 TTGCCAGTGAAGCAAGCATTCCATATACTCTATGAGCAGGGAATCCCTTTGGCTCCTCTT 1197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1085 TTGCCAGTGAAGCAAGCATTCCATATACTCTATGAGCAGGGAATCCCTTTGGCTCCTCTT 1144 Query 1198 TGGGACTTTGGAAAAGGCCAATTTGTTGGAGTTCTTGGTCCACTAGACTTCATTCTAATA 1257 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1145 TGGGACTTTGGTAAAGGTCAATTTGTTGGAGTTCTTGGTCCACTAGACTTCATTCTAATA 1204 Query 1258 CTGAGAGAGCTTGGAACTCATGGATCAAACTTGACAGAGGAAGAGCTTGAGACGCACACA 1317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1205 CTGAGAGAGCTTGGAACTCATGGATCAAACTTGACAGAGGAAGAGCTTGAGACGCACACA 1264 Query 1318 ATAGCAGCCTGGAAAGAGGGGAAGGCTCATATTAGCCGGCAATATGATGGAAGTGGGAGA 1377 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1265 ATAGCAGCCTGGAAAGAGGGGAAGGCTCATATTAGCCGACAATATGATGGAAGTGGGAGA 1324 Query 1378 CCATATCCTAGGCCACTTGTTCAGGTTGGACCCTATGATAATCTGAAAGACGTTGCCCTG 1437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1325 CCATATCCTAGGCCACTTGTTCAGGTTGGACCCTATGATAATCTGAAAGACGTTGCCCTG 1384 Query 1438 AAAATTTTGCAAAACAAGGTGGCAGCTGTTCCGGTTATATATTCTTCTTTGCAGGATGGT 1497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1385 AAAATTTTGCAAAACAAGGTGGCAGCTGTTCCGGTTATATATTCTTCTTTGCAGGATGGT 1444 Query 1498 TCATATCCGCAGTTACTGCATCTTGCTTCGCTATCAGGCATATTAAAATGTATATGCAGA 1557 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1445 TCATATCCGCAGTTACTGCATCTTGCTTCGCTATCAGGCATCTTAAAATGTATATGCAGA 1504 Query 1558 TACTTTAGACATTCGTCTAGCTCTTTACCTATCCTTCAGCAACCCATTTGTTCAATTCCC 1617 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1505 TACTTTAGACATTCGTCTAGCTCTTTACCAATCCTTCAGCAACCCATTTGTTCAATTCCC 1564 Query 1618 CTGGGTACGTGGGTCCCTAGAATCGGAGAATCAAGTAGCAAACCTCTCGCTACATTGAGA 1677 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1565 TTGGGTACTTGGGTCCCTAGAATCGGAGAATCAAGTAGCAAACCTCTCGCTACATTGAGA 1624 Query 1678 CCTCACGCCTCTTTGGGTTCTGCGCTCGCATTATTAGTTCAAGCTGAAGTCAGTTCAATT 1737 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1625 CCTCATGCCTCTTTGGGTTCTGCGCTCGCATTATTAGTTCAAGCTGAAGTCAGTTCAATT 1684 Query 1738 CCCGTAGTGGATGACAACGACTCGCTTATTGACATATACTCTCGAAGTGATATAACTGCT 1797 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 1685 CCCGTAGTGGATGATAATGACTCGCTTATTGACATATACTCTCGAAGTGATATAACTGCT 1744 Query 1798 CTGGCTAAAGACAAGGCATACGCACAGATTCATCTTGATGACATGACAGTTCACCAGGCG 1857 ||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1745 CTGGCTAAAGATAAAGCATACGCACAGATTCATCTTGATGACATGACGGTTCACCAGGCG 1804 Query 1858 CTACAGTTGGGGCAAGATGCGAGCCCGCCTTATGGAATCTTCAACGGGCAGAGATGTCAC 1917 || ||||||||||||||||| || || ||||||||||||||||||||||||||||||||| Sbjct 1805 CTGCAGTTGGGGCAAGATGCAAGTCCACCTTATGGAATCTTCAACGGGCAGAGATGTCAC 1864 Query 1918 ATGTGCTTGCGCTCAGACTCTCTTGTGAAAGTGATGGAGCGGTTGGCGAATCCAGGTGTA 1977 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1865 ATGTGCTTGCGCTCGGACTCTCTTGTGAAAGTGATGGAGCGGTTGGCGAATCCAGGTGTA 1924 Query 1978 AGGAGGCTGGTGATAGTGGAAGCAGGGAGCAAACGTGTTGAAGGTATCATTTCACTGAGC 2037 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| Sbjct 1925 AGGAGGCTGGTGATAGTGGAAGCAGGTAGCAAACGTGTGGAAGGTATCATTTCATTGAGC 1984 Query 2038 GATGTTTTCCAATTCCTGCTCGGTCTTTGACTCCCACAGCAAAACAACCTCC-C--CAAC 2094 |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 1985 GATGTTTTCCAATTCCTGCTCGGTCTTTGACTCCCACAGCAAAACAACCTCCTCATCAAA 2044 Query 2095 CTCTTTTTCTCATTTCCCCTCAATCAAAACTACCCAACAATTTGCTTCtttttttttttt 2154 |||||||||||| |||| ||||||||||||||||||||||||||||||| || ||||| Sbjct 2045 CTCTTTTTCTCAATTCC--TCAATCAAAACTACCCAACAATTTGCTTCTTCTTCTTTTTA 2102 Query 2155 tttttttttCTTCTTGCAAGGAATTTGTAAATTTGCTACGAACCTCTT-T-CATCATTGT 2212 | ||||||||||||||||||||||||||||||||||||||| | | ||||||| Sbjct 2103 T--------CTTCTTGCAAGGAATTTGTAAATTTGCTACGAACCTCTTCTTCTTCATTGT 2154 Query 2213 TTTCTTATTATTTTTGTTGTTTTAGTTGAACGGGTTTCCATTCTTGTGAAGATATTGGCT 2272 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2155 TTTCTTATTATTTTTGTTGTTTTAGTTGAACAAGTTTCCATTCTTGTGAAGATATTGGCT 2214 Query 2273 ACCGGAATCTTTTACTAGTAGCTTCC 2298 |||||||||||||||||||||||||| Sbjct 2215 ACCGGAATCTTTTACTAGTAGCTTCC 2240 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86693397620 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5