BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09140.1
Length=1273
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470995 jgi|Araly1|470995|fgenesh2_kg.1__949__AT1G09140.1 1498 0.0
> Ahg470995 jgi|Araly1|470995|fgenesh2_kg.1__949__AT1G09140.1
Length=1236
Score = 1498 bits (811), Expect = 0.0
Identities = 1041/1147 (91%), Gaps = 35/1147 (3%)
Strand=Plus/Plus
Query 144 ATGAGTAGCCGATGGAATCGTACGATCTACGTTGGGAATTTGCCTGGAGATATTCGCAAG 203
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 99 ATGAGTAGCCGATGGAATCGTACGATCTACGTTGGGAATTTGCCTGGAGATATTCGCATG 158
Query 204 TGTGAGGTTGAAGATCTCTTCTACAAGTATGGACCAATTGTGGACATTGATTTGAAGATT 263
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 159 CGTGAGGTTGAAGATCTCTTCTACAAGTACGGACCAATTGTGGACATTGATTTGAAGATT 218
Query 264 CCACCGAGACCTCCTGGTTATGCCTTTGTCGAGTTTGAAGATCCTCGTGATGCAGACGAT 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 CCACCGAGACCTCCTGGTTATGCCTTTGTCGAGTTTGAAGATCCTCGTGATGCAGACGAT 278
Query 324 GCAATTTATGGACGTGATGGTTATGATTTTGATGGGTGTCGACTTCGGGTTGAGATTGCA 383
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 279 GCAATTTATGGACGTGATGGTTATGATTTTGATGGGTGTCGTCTACGGGTTGAGATTGCA 338
Query 384 CATGGTGGTCGTAGATTTTCACCATCAGTTGATAGGTACAGCAGCAGCTACAGTGCGAGC 443
||||||||||||||| |||| ||||||| |||||||||||||||||||||| || ||||
Sbjct 339 CATGGTGGTCGTAGAGGTTCATCATCAGTCGATAGGTACAGCAGCAGCTACACTGGGAGC 398
Query 444 CGTGCACCTTCAAGACGCTCTGACTACCGCGTGCTTGTGACCGGATTACCGCCTTCTGCT 503
||||||||||| || ||||||| ||| |||||||||||||| |||||||| |||||||||
Sbjct 399 CGTGCACCTTCTAGGCGCTCTGCCTATCGCGTGCTTGTGACGGGATTACCACCTTCTGCT 458
Query 504 TCGTGGCAGGACCTTAAGGATCACATGCGCAAAGCTGGAGATGTCTGCTTCTCTGAAGTT 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 TCGTGGCAGGACCTTAAGGATCACATGCGCAAAGCTGGAGATGTCTGCTTCTCTGAAGTT 518
Query 564 TTCCCTGACCGTAAAGGCATGTCTGGGGTTGTGGATTATAGCAACTATGATGATATGAAG 623
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TTCCGTGACCGTGGAGGCATGTCTGGGGTTGTGGATTATAGCAACTATGATGATATGAAG 578
Query 624 TACGCAATAAGGAAACTTGATGCCACTGAATTTCGAAATGCTTTCTCTAGTGCTTATATA 683
||||| |||||||||||||||| |||||| |||||||||||||||||||| |||||||||
Sbjct 579 TACGCGATAAGGAAACTTGATGACACTGAGTTTCGAAATGCTTTCTCTAGAGCTTATATA 638
Query 684 CGGGTGAGGGAATATGAGTCGAGGAGTGTGAGTCGA-AGCCCAGATGATTCTAAAAGCTA 742
|||||||| ||||||||||||||||||||||||| | |||||| ||||||||| ||||||
Sbjct 639 CGGGTGAGAGAATATGAGTCGAGGAGTGTGAGTC-ACAGCCCATATGATTCTAGAAGCTA 697
Query 743 TAGAAGCAGGAGTCGGAGCCGTGGTCCAAGCTGTAGCTATAGTAGCAAGAGCAGGAGTGT 802
|||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||
Sbjct 698 TAGAAGCAGGAGTCGGAGCCGTAGTCGAAGCTGTAGCTATAGTAGCAGGAGCAGGAGTGT 757
Query 803 GTCACCTGCTAGATCCATTTCCCCGCGTTCACGGCCCCTTAGTCGTTCTCGCTCGCTATA 862
||||||||||||||| ||||||||||||||||| ||||||||||| |||| |||| |||
Sbjct 758 GTCACCTGCTAGATCTGTTTCCCCGCGTTCACGGTCCCTTAGTCGTGCTCGTTCGCCATA 817
Query 863 CAGCTCTGTCTCAAGGTCCCA-ATCAAGATCAAAATCAAGATCAAGAT-CA--AGAT-C- 916
||||||||||||||||||| | ||||||||||| ||||||||||| || | || | |
Sbjct 818 CAGCTCTGTCTCAAGGTCC-AGATCAAGATCAAGATCAAGATCAA-ATTCTCCAGTTTCA 875
Query 917 ---G-AATTCTCCA-GTTTCACCTGTGATATCTGGTTGAAAATGAAAACTGGCCACTGGC 971
| || ||| | | || | |||| ||||| ||||||||||||||||| ||||||
Sbjct 876 CCTGTAAGTCTAAAAGGTTAA---GTGAGATCTGATTGAAAATGAAAACTGGTGACTGGC 932
Query 972 TGTACCCGAATCGTCTCAAGCTTCTCAG-GCTCCACTGCTAATAGAATTTGATTCCGATT 1030
|||||| ||||||||||| ||||||||| | ||||||||||||||||| |||| | ||||
Sbjct 933 TGTACCTGAATCGTCTCATGCTTCTCAGAG-TCCACTGCTAATAGAATCTGATACGGATT 991
Query 1031 TGGGATTATTATACTGGTCTTCTTGTATGGGACGACCAATATGTCTTTCTAGTTTTAGTT 1090
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 TGGGATTATCCTGCTGGTCTTCTTGTATGGGACGACCAATATGTCTTTCTAGTTTTAGTT 1051
Query 1091 GT-GAACCTGGAATTGGTCTGTTATTGTGTCATTAA-AAAGCCGGAAACTCTGTCTCGGC 1148
| |||| |||||||||||||||||||||||||||| |||||| |||||| | ||| |||
Sbjct 1052 TTTGAACATGGAATTGGTCTGTTATTGTGTCATTAAGAAAGCCAGAAACTTTATCTTGGC 1111
Query 1149 TGCATAATAAAGTTCATCAGAC-ATTGTGTTGGGTGTG--GTGAGGTTTTTCCATACATA 1205
|||||| ||||||||||||||| | ||| || ||||| |||||||||||||||||| |
Sbjct 1112 TGCATATTAAAGTTCATCAGACGAC-GTGGTGCGTGTGTTGTGAGGTTTTTCCATACAAA 1170
Query 1206 TACATTTACATTACAACTACTGG---TGT-----CTTTTATGATTATCTTAAACTAAACT 1257
|| ||||||||||||||||||| ||| |||||||||| |||||||||||| |
Sbjct 1171 TAT-TTTACATTACAACTACTGGAAGTGTGGTGTCTTTTATGATCCTCTTAAACTAAATT 1229
Query 1258 TGCAGTG 1264
|||||||
Sbjct 1230 TGCAGTG 1236
Score = 143 bits (77), Expect = 3e-33
Identities = 92/99 (93%), Gaps = 2/99 (2%)
Strand=Plus/Plus
Query 1 AACGGTGGTTGTCTCCTTTCCAGAACAATCTAACGCTTTCTCGAACAtcttcttcttctt 60
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 AACGGTAGTTGTCTTCTTTCCAGAACAATCTAACGCTTTCTCGAACATCTTCTTCT-CTT 59
Query 61 ctttctcgaaatt-atttttccagtaatcaatttcttct 98
|||| || ||||| ||||||||||| |||||||||||||
Sbjct 60 CTTTTTCAAAATTTATTTTTCCAGTCATCAATTTCTTCT 98
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47577400416
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5