BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G09180.1 Length=737 Score E Sequences producing significant alignments: (Bits) Value Ahg471006 jgi|Araly1|471006|fgenesh2_kg.1__960__AT1G09180.1 928 0.0 Ahg337811 jgi|Araly1|337811|fgenesh1_pg.C_scaffold_1004376 294 5e-79 > Ahg471006 jgi|Araly1|471006|fgenesh2_kg.1__960__AT1G09180.1 Length=659 Score = 928 bits (502), Expect = 0.0 Identities = 583/622 (94%), Gaps = 6/622 (1%) Strand=Plus/Plus Query 88 TGTGTGGATTATAATCCGATATCAGGAAGAAGACGTCATGTTTTTATTCGATTGGTTCTA 147 |||||||||| |||| ||| | ||||||| |||||||||||||| || ||||||||||| Sbjct 41 TGTGTGGATTCTAATTAGATCTGAGGAAGACGACGTCATGTTTTTGTTTGATTGGTTCTA 100 Query 148 TGGAATCTTGGCCTCGTTAGGGTTGT-GCAAAAAAGAGGCGAAAATCTTGTTTTTAGGCC 206 |||||| || || |||||||| |||| || | ||||| ||||| ||||||||| |||||| Sbjct 101 TGGAATATTTGCGTCGTTAGGTTTGTGGC-AGAAAGAAGCGAAGATCTTGTTTCTAGGCC 159 Query 207 TCGACAATGCCGGAAAAACTACTTTGCTTCACATGCTCAAAGATGAGAGATTAGTTCAGC 266 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 160 TCGACAATGCCGGAAAAACTACTTTACTTCACATGCTCAAAGACGAGAGATTAGTTCAGC 219 Query 267 ACCAGCCAACACAGCATCCCACGTCTGAGGAACTTAGCATTGGCAAAATCAACTTCAAGG 326 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 220 ACCAGCCAACACAGCATCCCACGTCTGAGGAACTTAGCATTGGCAAAATCAAGTTCAAGG 279 Query 327 CCTTTGATTTGGGTGGCCATCAGATTGCTCGTAGGGTTTGGAAAGACTGCTATGCCAAGG 386 |||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||| Sbjct 280 CCTTTGATTTGGGTGGCCATCAGATTGCTCGTCGGGTTTGGAAAGATTACTATGCCAAGG 339 Query 387 TTGATGCTGTTGTCTACCTAGTGGATGCTTACGACAGGGATAGATTTGTGGAGTCGAAAA 446 ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 340 TTGATGCTGTTGTCTACCTTGTGGATGCTTACGACAGGGAGAGATTTGTGGAGTCGAAAA 399 Query 447 GAGAGCTAGACGCTCTTTTATCAGATGAAGCCTTAGCAAATGTTCCCTGTCTTATTCTTG 506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 400 GAGAGCTAGACGCTCTTTTATCAGATGAAGCCTTAGCAAATGTTCCCTGTCTTATTCTTG 459 Query 507 GCAACAAGATTGATATACCTTATGCATCCTCAGAAGATGAGCTTAGGTATTACTTAGGTC 566 |||||||||||||||| |||||||||||||||||||||||||| |||||| |||| |||| Sbjct 460 GCAACAAGATTGATATTCCTTATGCATCCTCAGAAGATGAGCTCAGGTATCACTTGGGTC 519 Query 567 TCACCAATTTCACTACCGGTAAAGGCA-TAGTGAATCTTGAAGACTCTGGTGTTCGTCCC 625 ||||||||||||||||||||||||||| | || | ||||||| ||||||||||||||||| Sbjct 520 TCACCAATTTCACTACCGGTAAAGGCAAT-GTCAGTCTTGAAAACTCTGGTGTTCGTCCC 578 Query 626 CTTGAGGTCTTCATGTGCAGCATCGTCCGCAAAATGGGTTATGGCGA-GGGTTTTAAATG 684 |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| Sbjct 579 CTTGAGGTCTTCATGTGCAGCATCGTCCGCAAAATGGGTTATGGTGAAGGGTTC-AAATG 637 Query 685 GCTATCTCAGTATATCAAGTAG 706 |||||||||||||||||||||| Sbjct 638 GCTATCTCAGTATATCAAGTAG 659 > Ahg337811 jgi|Araly1|337811|fgenesh1_pg.C_scaffold_1004376 Length=633 Score = 294 bits (159), Expect = 5e-79 Identities = 229/263 (87%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 125 ATGTTTTTATTCGATTGGTTCTATGGAATCTTGGCCTCGTTAGGGTTGT-GCAAAAAAGA 183 ||||| || |||||||||||||| |||||||| |||||||||||||| | || ||||||| Sbjct 1 ATGTTCTTGTTCGATTGGTTCTACGGAATCTTAGCCTCGTTAGGGTTATGGC-AAAAAGA 59 Query 184 GGCGAAA-ATCTTGTTTTTAGGCCTCGACAATGCCGGAAAAACTACTTTGCTTCACATGC 242 || ||| ||||||||| | || ||||| ||||| || ||||| || || |||||||||| Sbjct 60 AGC-AAAGATCTTGTTTCTCGGACTCGATAATGCTGGCAAAACCACCTTACTTCACATGC 118 Query 243 TCAAAGATGAGAGATTAGTTCAGCACCAGCCAACACAGCATCCCACGTCTGAGGAACTTA 302 ||||||| ||||||||||||||||| ||||| || || ||||| |||||||| ||||||| Sbjct 119 TCAAAGACGAGAGATTAGTTCAGCATCAGCCGACGCAACATCCAACGTCTGAAGAACTTA 178 Query 303 GCATTGGCAAAATCAACTTCAAGGCCTTTGATTTGGGTGGCCATCAGATTGCTCGTAGGG 362 | ||||| ||||| || |||||||| |||||||||||||| ||||||||||||||||||| Sbjct 179 GTATTGGGAAAATAAAGTTCAAGGCTTTTGATTTGGGTGGTCATCAGATTGCTCGTAGGG 238 Query 363 TTTGGAAAGACTGCTATGCCAAG 385 |||||||||| | |||||||||| Sbjct 239 TTTGGAAAGATTACTATGCCAAG 261 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27143516904 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5